Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

POLR2F Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 5435 polymerase (RNA) II (DNA directed) polypeptide F chr22 + 38344673 - 38350173 38349673 Transcription Factor Binding Sites   Download all TFBS in the POLR2F promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 38349433 38349450 4.0E-06 TATGCCAAAATTGAAATT 18 TBX21_TBX_full_dimeric_16_1 SELEX - 38349789 38349804 4.0E-06 TGTCTGACATGACACC 16 GABPA_MA0062.2 JASPAR + 38349665 38349675 3.0E-06 CCGGAAGTGAT 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 38349187 38349197 7.0E-06 GACACACCCCC 11 ELF4_ETS_full_monomeric_12_1 SELEX + 38349662 38349673 5.0E-06 CTCCCGGAAGTG 12 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 38349600 38349615 9.0E-06 CGCTACTATAGAAACG 16 ELF3_ETS_full_monomeric_13_1 SELEX + 38349662 38349674 5.0E-06 CTCCCGGAAGTGA 13 RFX2_RFX_DBD_dimeric_16_1 SELEX + 38349600 38349615 1.0E-05 CGCTACTATAGAAACG 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 38349600 38349615 6.0E-06 CGCTACTATAGAAACG 16 ELF3_ETS_DBD_monomeric_12_1 SELEX + 38349662 38349673 8.0E-06 CTCCCGGAAGTG 12 NRF1_NRF_full_dimeric_12_1 SELEX + 38349630 38349641 4.0E-06 AGCGCATGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 38349630 38349641 0.0E+00 TGCGCATGCGCT 12 V_TEL1_02_M02070 TRANSFAC + 38349664 38349673 5.0E-06 CCCGGAAGTG 10 V_STAT3_01_M00225 TRANSFAC + 38349656 38349676 8.0E-06 TCCTGCCTCCCGGAAGTGATT 21 V_FLI1_Q6_M01208 TRANSFAC + 38349665 38349675 1.0E-06 CCGGAAGTGAT 11 V_NKX29_01_M01352 TRANSFAC - 38350231 38350247 8.0E-06 TCTGGAGTACTCCTATA 17 V_NERF_01_M01976 TRANSFAC + 38349664 38349673 9.0E-06 CCCGGAAGTG 10 V_FOXJ1_04_M02854 TRANSFAC + 38349407 38349421 5.0E-06 TGGTCACAACAGTAC 15 V_IRF_Q6_01_M00972 TRANSFAC + 38349439 38349449 4.0E-06 AAAATTGAAAT 11 V_ELF2_02_M02054 TRANSFAC + 38349664 38349673 8.0E-06 CCCGGAAGTG 10 V_NFE4_Q5_M02105 TRANSFAC - 38349781 38349792 5.0E-06 CACCCTCGCCTC 12 V_TEL2_Q6_M00678 TRANSFAC - 38349665 38349674 9.0E-06 TCACTTCCGG 10 V_TEL1_01_M01993 TRANSFAC + 38349664 38349673 5.0E-06 CCCGGAAGTG 10 V_ELF4_01_M01979 TRANSFAC + 38349664 38349673 4.0E-06 CCCGGAAGTG 10 V_AML2_Q3_01_M01854 TRANSFAC - 38347479 38347489 7.0E-06 CCACATCATGG 11 V_ZFP206_01_M01742 TRANSFAC - 38349691 38349701 8.0E-06 TGCGCCTGCGC 11 V_NRF1_Q6_M00652 TRANSFAC + 38349632 38349641 2.0E-06 CGCATGCGCA 10 V_STAT6_02_M00500 TRANSFAC + 38349673 38349680 1.0E-05 GATTTCCT 8 V_SIX4_01_M01374 TRANSFAC - 38349784 38349800 6.0E-06 TGACATGACACCCTCGC 17 V_OCT1_07_M00248 TRANSFAC + 38349439 38349450 8.0E-06 AAAATTGAAATT 12 V_IRF1_Q6_01_M01881 TRANSFAC - 38349438 38349451 2.0E-06 AAATTTCAATTTTG 14 V_ELF_02_M02053 TRANSFAC + 38349664 38349673 1.0E-05 CCCGGAAGTG 10 V_SOX15_04_M02903 TRANSFAC + 38349439 38349453 6.0E-06 AAAATTGAAATTTCA 15 V_PPARG_01_M00512 TRANSFAC - 38349440 38349460 7.0E-06 CTTAGGGTGAAATTTCAATTT 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.