Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PLAGL1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 5325 pleiomorphic adenoma gene-like 1 chr6 - 144385235 - 144390735 144385735 V_PLAGL1_04_M02890 V_PLAGL1_03_M02786 Transcription Factor Binding Sites   Download all TFBS in the PLAGL1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SP8_C2H2_DBD_monomeric_12_1 SELEX + 144384917 144384928 6.0E-06 CCCACGCCCACC 12 HINFP1_C2H2_full_dimeric_19_1 SELEX - 144385688 144385706 9.0E-06 CCGCACGCCCAGCGGCCGC 19 E2F3_E2F_DBD_dimeric_18_2 SELEX + 144384099 144384116 3.0E-06 AGAAATGGTGCCTTTTTC 18 E2F3_E2F_DBD_dimeric_18_2 SELEX - 144384099 144384116 3.0E-06 GAAAAAGGCACCATTTCT 18 Sox1_HMG_DBD_dimeric_14_1 SELEX + 144388137 144388150 3.0E-06 TGAACTTTCATGCA 14 SP3_C2H2_DBD_monomeric_11_1 SELEX + 144384917 144384927 2.0E-06 CCCACGCCCAC 11 IRF7_IRF_DBD_dimeric_14_1 SELEX + 144386062 144386075 6.0E-06 TTGAAACTGAAACA 14 Pax6_MA0069.1 JASPAR + 144388143 144388156 8.0E-06 TTCATGCAGGAATT 14 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 144385179 144385189 1.0E-05 GCCCCGCCCCC 11 HSF1_HSF_full_trimeric_13_1 SELEX - 144385629 144385641 6.0E-06 CTCCAGAACTTTC 13 IRF8_IRF_full_dimeric_14_1 SELEX + 144386062 144386075 0.0E+00 TTGAAACTGAAACA 14 GRHL1_CP2_full_dimeric_12_1 SELEX + 144388372 144388383 5.0E-06 AGAACAGGTTTA 12 SOX8_HMG_full_dimeric_17_1 SELEX - 144384758 144384774 8.0E-06 CAACTATGGCAGTTATT 17 EGR1_C2H2_full_monomeric_14_1 SELEX + 144385834 144385847 3.0E-06 TCCGCCCCCGCGTT 14 E2F2_E2F_DBD_dimeric_16_1 SELEX - 144384100 144384115 1.0E-06 AAAAAGGCACCATTTC 16 SPIB_ETS_DBD_monomeric_14_1 SELEX + 144385730 144385743 8.0E-06 GAAAAGGGGAAGGG 14 SPIB_ETS_DBD_monomeric_14_1 SELEX + 144388186 144388199 8.0E-06 CAATAAAGGAAGTG 14 SPIB_ETS_DBD_monomeric_14_1 SELEX - 144388462 144388475 8.0E-06 AAAAAGAAGAAGAA 14 IRF1_MA0050.1 JASPAR + 144386064 144386075 5.0E-06 GAAACTGAAACA 12 CUX1_CUT_DBD_dimeric_18_1 SELEX + 144388172 144388189 9.0E-06 TTCAAAAACAAATTCAAT 18 HSF4_HSF_DBD_trimeric_13_1 SELEX - 144385629 144385641 5.0E-06 CTCCAGAACTTTC 13 SP1_MA0079.2 JASPAR + 144385180 144385189 7.0E-06 CCCCGCCCCC 10 SP4_C2H2_full_monomeric_17_1 SELEX + 144385176 144385192 1.0E-05 ACAGCCCCGCCCCCAGC 17 Egr3_C2H2_DBD_monomeric_15_1 SELEX + 144385834 144385848 8.0E-06 TCCGCCCCCGCGTTG 15 EGR4_C2H2_DBD_monomeric_16_2 SELEX + 144385833 144385848 4.0E-06 ATCCGCCCCCGCGTTG 16 IRF9_IRF_full_trimeric_15_1 SELEX + 144386061 144386075 2.0E-06 CTTGAAACTGAAACA 15 IRF9_IRF_full_trimeric_15_1 SELEX - 144388491 144388505 9.0E-06 AACAAGAGTGAAACT 15 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 144388418 144388432 1.0E-06 AGAAAGTGAGAGCGA 15 Nkx3-2_MA0122.1 JASPAR - 144385945 144385953 8.0E-06 CTAAGTGGA 9 IRF4_IRF_full_dimeric_15_1 SELEX + 144386062 144386076 0.0E+00 TTGAAACTGAAACAA 15 IRF5_IRF_full_dimeric_14_1 SELEX + 144386062 144386075 3.0E-06 TTGAAACTGAAACA 14 SPI1_ETS_full_monomeric_14_1 SELEX + 144385730 144385743 6.0E-06 GAAAAGGGGAAGGG 14 SPI1_ETS_full_monomeric_14_1 SELEX - 144388462 144388475 5.0E-06 AAAAAGAAGAAGAA 14 IRF3_IRF_full_trimeric_21_1 SELEX + 144386056 144386076 2.0E-06 TGGGGCTTGAAACTGAAACAA 21 IRF2_MA0051.1 JASPAR - 144388486 144388503 5.0E-06 CAAGAGTGAAACTCTTAC 18 V_FOXP1_01_M00987 TRANSFAC - 144386545 144386564 7.0E-06 ATATTCATATTTGTGAGATG 20 V_FOXP1_01_M00987 TRANSFAC + 144388468 144388487 5.0E-06 TTCTTTTTCTTTTTTTGAGT 20 V_SPI1_01_M01203 TRANSFAC + 144385730 144385746 4.0E-06 GAAAAGGGGAAGGGGAG 17 V_TCF3_01_M01594 TRANSFAC + 144388471 144388483 3.0E-06 TTTTTCTTTTTTT 13 V_FLI1_Q6_M01208 TRANSFAC + 144388191 144388201 9.0E-06 AAGGAAGTGAG 11 V_MYB_03_M02883 TRANSFAC + 144384756 144384771 9.0E-06 TGAATAACTGCCATAG 16 V_HMGIY_Q3_M01010 TRANSFAC - 144384793 144384807 5.0E-06 TGTTCATTTTATTGA 15 V_AR_Q6_01_M01996 TRANSFAC - 144388412 144388426 5.0E-06 TCACTTTCTGTTCTC 15 V_SP1_Q6_01_M00931 TRANSFAC - 144385179 144385188 4.0E-06 GGGGCGGGGC 10 V_ZTA_Q2_M00711 TRANSFAC - 144388483 144388495 2.0E-06 AAACTCTTACTCA 13 V_IRF_Q6_01_M00972 TRANSFAC + 144386064 144386074 2.0E-06 GAAACTGAAAC 11 V_IRF_Q6_01_M00972 TRANSFAC - 144388472 144388482 6.0E-06 AAAAAAGAAAA 11 V_IRF2_Q6_M01882 TRANSFAC + 144386062 144386077 3.0E-06 TTGAAACTGAAACAAC 16 V_IRF2_Q6_M01882 TRANSFAC + 144388411 144388426 9.0E-06 GGAGAACAGAAAGTGA 16 V_AP4_Q6_M00176 TRANSFAC - 144388047 144388056 5.0E-06 CACAGCTGGA 10 V_FOXO3A_Q1_M01137 TRANSFAC + 144388174 144388185 5.0E-06 CAAAAACAAATT 12 V_SP1_03_M02281 TRANSFAC + 144385180 144385189 7.0E-06 CCCCGCCCCC 10 V_SP1_02_M01303 TRANSFAC - 144385501 144385511 8.0E-06 GGGGCGGGGGC 11 V_SP1_02_M01303 TRANSFAC - 144385541 144385551 3.0E-06 GGGGCGGGGAG 11 V_PU1_Q4_M01172 TRANSFAC - 144384087 144384105 0.0E+00 CATTTCTGCTTCCTCTTCT 19 V_PU1_Q4_M01172 TRANSFAC - 144385731 144385749 1.0E-06 TTCCTCCCCTTCCCCTTTT 19 V_PU1_Q4_M01172 TRANSFAC - 144388187 144388205 0.0E+00 CTCTCTCACTTCCTTTATT 19 V_PU1_Q4_M01172 TRANSFAC + 144388453 144388471 8.0E-06 TTACTTTTTTTCTTCTTCT 19 V_PU1_Q4_M01172 TRANSFAC + 144388456 144388474 0.0E+00 CTTTTTTTCTTCTTCTTTT 19 V_PU1_Q4_M01172 TRANSFAC + 144388459 144388477 9.0E-06 TTTTTCTTCTTCTTTTTCT 19 V_PU1_Q4_M01172 TRANSFAC + 144388465 144388483 3.0E-06 TTCTTCTTTTTCTTTTTTT 19 V_HOXD13_01_M01404 TRANSFAC + 144384790 144384805 1.0E-06 TTTTCAATAAAATGAA 16 V_TCFAP2E_04_M02926 TRANSFAC - 144388456 144388469 6.0E-06 AAGAAGAAAAAAAG 14 V_TCFAP2E_04_M02926 TRANSFAC - 144388475 144388488 1.0E-06 TACTCAAAAAAAGA 14 V_CDX_Q5_M00991 TRANSFAC + 144388175 144388192 5.0E-06 AAAAACAAATTCAATAAA 18 V_HBP1_Q2_M01661 TRANSFAC + 144384792 144384800 4.0E-06 TTCAATAAA 9 V_ELF4_04_M02850 TRANSFAC + 144388170 144388186 2.0E-06 CTTTCAAAAACAAATTC 17 V_GC_01_M00255 TRANSFAC - 144385177 144385190 0.0E+00 TGGGGGCGGGGCTG 14 V_CRX_Q4_M00623 TRANSFAC - 144386124 144386136 7.0E-06 TTGCTAATCCCAG 13 V_PR_Q2_M00960 TRANSFAC - 144384713 144384722 1.0E-06 GAAAGAACAG 10 V_PR_Q2_M00960 TRANSFAC - 144388336 144388345 4.0E-06 AAAAGAACAT 10 V_ZFP105_03_M02827 TRANSFAC - 144388468 144388482 7.0E-06 AAAAAAGAAAAAGAA 15 V_TBX18_01_M01262 TRANSFAC - 144384104 144384122 6.0E-06 TGGTTTGAAAAAGGCACCA 19 V_HIC1_06_M02867 TRANSFAC - 144388352 144388367 0.0E+00 TGAAGTGCCCAATAGC 16 V_DOBOX4_01_M01359 TRANSFAC - 144384846 144384862 5.0E-06 GACAGAGATACCCCTGG 17 V_IRF2_01_M00063 TRANSFAC - 144388491 144388503 7.0E-06 CAAGAGTGAAACT 13 V_SP1_Q6_M00196 TRANSFAC - 144385178 144385190 1.0E-06 TGGGGGCGGGGCT 13 V_MAZ_Q6_01_M02023 TRANSFAC + 144385740 144385753 7.0E-06 AGGGGAGGAAGGGG 14 V_EGR1_Q6_M01873 TRANSFAC - 144385835 144385844 4.0E-06 GCGGGGGCGG 10 V_IRF_Q6_M00772 TRANSFAC - 144388413 144388427 1.0E-06 CTCACTTTCTGTTCT 15 V_IRF_Q6_M00772 TRANSFAC + 144388468 144388482 1.0E-06 TTCTTTTTCTTTTTT 15 V_PAX5_01_M00143 TRANSFAC + 144384917 144384944 6.0E-06 CCCACGCCCACCGTGGCGGGGCGTGTCC 28 V_OCT1_04_M00138 TRANSFAC + 144386549 144386571 0.0E+00 TCACAAATATGAATATGTAACTA 23 V_SPIB_01_M01204 TRANSFAC + 144388186 144388202 6.0E-06 CAATAAAGGAAGTGAGA 17 V_NR1B1_Q6_M02110 TRANSFAC - 144388154 144388163 5.0E-06 AAAGTTCAAT 10 V_ICSBP_Q6_M00699 TRANSFAC + 144388414 144388425 5.0E-06 GAACAGAAAGTG 12 V_PAX8_B_M00328 TRANSFAC + 144388140 144388157 7.0E-06 ACTTTCATGCAGGAATTG 18 V_FOXO1_Q5_M01216 TRANSFAC + 144388175 144388183 1.0E-06 AAAAACAAA 9 V_TFIII_Q6_M00706 TRANSFAC + 144388202 144388210 6.0E-06 AGAGGGAGG 9 V_GR_Q6_02_M01836 TRANSFAC - 144388411 144388423 4.0E-06 CTTTCTGTTCTCC 13 V_SP4_Q5_M01273 TRANSFAC + 144385179 144385189 1.0E-06 GCCCCGCCCCC 11 V_ELF1_Q6_M00746 TRANSFAC + 144384087 144384098 7.0E-06 AGAAGAGGAAGC 12 V_HBP1_04_M02866 TRANSFAC - 144386108 144386124 8.0E-06 GAATCTCATTTTATACT 17 V_ZFP105_04_M02931 TRANSFAC + 144384788 144384804 4.0E-06 CTTTTTCAATAAAATGA 17 V_MTF1_06_M02882 TRANSFAC - 144388457 144388470 4.0E-06 GAAGAAGAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 144388469 144388482 1.0E-06 AAAAAAGAAAAAGA 14 V_AP4_01_M00005 TRANSFAC + 144385661 144385678 2.0E-06 TGGGTCAGCTCCGGCCGG 18 V_TAL1_01_M01591 TRANSFAC - 144385340 144385352 1.0E-05 TTCCCTTTTCTCC 13 V_BDP1_01_M01796 TRANSFAC + 144388151 144388162 3.0E-06 GGAATTGAACTT 12 V_FPM315_01_M01587 TRANSFAC + 144388434 144388445 0.0E+00 GAGGGAGGAGGG 12 V_P53_05_M01655 TRANSFAC + 144388304 144388323 6.0E-06 GTGCTTATTCAGGCAAGCTG 20 V_ZFP281_01_M01597 TRANSFAC - 144385180 144385190 6.0E-06 TGGGGGCGGGG 11 V_BBX_03_M02739 TRANSFAC + 144384789 144384803 8.0E-06 TTTTTCAATAAAATG 15 V_BBX_03_M02739 TRANSFAC + 144388181 144388195 3.0E-06 AAATTCAATAAAGGA 15 V_EGR1_06_M02744 TRANSFAC + 144385834 144385847 1.0E-06 TCCGCCCCCGCGTT 14 V_IRF1_Q6_01_M01881 TRANSFAC - 144386063 144386076 2.0E-06 TTGTTTCAGTTTCA 14 V_IRF1_Q6_01_M01881 TRANSFAC + 144388470 144388483 7.0E-06 CTTTTTCTTTTTTT 14 V_SRF_06_M02916 TRANSFAC + 144388170 144388186 2.0E-06 CTTTCAAAAACAAATTC 17 V_SRF_06_M02916 TRANSFAC - 144388454 144388470 5.0E-06 GAAGAAGAAAAAAAGTA 17 V_SRF_06_M02916 TRANSFAC - 144388468 144388484 6.0E-06 CAAAAAAAGAAAAAGAA 17 V_PUR1_Q4_M01721 TRANSFAC + 144385238 144385246 6.0E-06 GGGACAGTG 9 V_HSF2_02_M01244 TRANSFAC + 144385629 144385641 1.0E-05 GAAAGTTCTGGAG 13 V_FOXO1_01_M00473 TRANSFAC + 144388174 144388183 4.0E-06 CAAAAACAAA 10 V_IRF1_01_M00062 TRANSFAC - 144388491 144388503 9.0E-06 CAAGAGTGAAACT 13 V_SP1_Q2_01_M00933 TRANSFAC + 144385180 144385189 4.0E-06 CCCCGCCCCC 10 V_FOXO4_01_M00472 TRANSFAC + 144388175 144388185 3.0E-06 AAAAACAAATT 11 V_HOXA10_01_M01464 TRANSFAC + 144384790 144384805 4.0E-06 TTTTCAATAAAATGAA 16 V_SP1_Q4_01_M00932 TRANSFAC - 144385178 144385190 2.0E-06 TGGGGGCGGGGCT 13 V_HOXD10_01_M01375 TRANSFAC + 144384790 144384806 1.0E-06 TTTTCAATAAAATGAAC 17 V_TCF3_05_M02920 TRANSFAC + 144386103 144386117 9.0E-06 AGGGAAGTATAAAAT 15 V_DEC_Q1_M00997 TRANSFAC - 144384777 144384789 4.0E-06 AGCCAAGTGAAGT 13 V_GLIS2_04_M02863 TRANSFAC - 144384787 144384800 8.0E-06 TTTATTGAAAAAGC 14 V_SMAD1_01_M01590 TRANSFAC - 144388458 144388469 7.0E-06 AAGAAGAAAAAA 12 V_DMRT5_01_M01150 TRANSFAC - 144386064 144386078 1.0E-06 AGTTGTTTCAGTTTC 15 V_SPI1_02_M02043 TRANSFAC + 144386102 144386111 6.0E-06 AAGGGAAGTA 10 V_NANOG_02_M01247 TRANSFAC - 144388454 144388473 1.0E-06 AAAGAAGAAGAAAAAAAGTA 20 V_NANOG_02_M01247 TRANSFAC - 144388466 144388485 1.0E-06 TCAAAAAAAGAAAAAGAAGA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.