Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PKHD1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 5314 polycystic kidney and hepatic disease 1 (autosomal recessive) chr6 - 51951923 - 51957423 51952423 Transcription Factor Binding Sites   Download all TFBS in the PKHD1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 51952668 51952686 3.0E-06 GGACCACTAGAGGGCAGAT 19 HOXD12_homeodomain_DBD_monomeric_9_1 SELEX + 51954846 51954854 9.0E-06 TTAATAAAA 9 Sox17_MA0078.1 JASPAR - 51954055 51954063 2.0E-06 TTCATTGTC 9 Foxk1_forkhead_DBD_putatively-multimeric_11_1 SELEX - 51952403 51952413 3.0E-06 GGGACACAAAC 11 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX + 51954564 51954573 7.0E-06 GCCATAAAAT 10 HOXC13_homeodomain_DBD_monomeric_11_1 SELEX + 51952729 51952739 6.0E-06 ACTCGTAAATA 11 NFIA_NFI_full_dimeric_15_1 SELEX - 51954789 51954803 7.0E-06 TGGGCAAGCTGCCAG 15 POU5F1P1_POU_DBD_monomeric_9_1 SELEX - 51952468 51952476 5.0E-06 TATGTTAAT 9 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX + 51954825 51954836 2.0E-06 TCTTTTCTCACA 12 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX - 51954715 51954731 1.0E-06 AAGGTTCAGCAAGGTCA 17 HNF1B_MA0153.1 JASPAR + 51952462 51952473 0.0E+00 TTAATGATTAAC 12 POU2F3_POU_DBD_monomeric_9_1 SELEX - 51952468 51952476 6.0E-06 TATGTTAAT 9 SOX8_HMG_full_dimeric_15_1 SELEX - 51954374 51954388 4.0E-06 AACAATTTTTGTGCT 15 HOXD13_homeodomain_DBD_monomeric_11_1 SELEX + 51954359 51954369 6.0E-06 GCTTATAAAAT 11 NFIX_NFI_full_dimeric_15_2 SELEX + 51954789 51954803 6.0E-06 CTGGCAGCTTGCCCA 15 POU1F1_POU_DBD_monomeric_14_1 SELEX - 51952465 51952478 5.0E-06 CTTATGTTAATCAT 14 SOX7_HMG_full_dimeric_17_2 SELEX - 51952380 51952396 8.0E-06 GGTGAGTTATAGTCTAA 17 EBF1_MA0154.1 JASPAR + 51952260 51952269 5.0E-06 ACTCAAGGGA 10 GATA5_GATA_DBD_monomeric_8_1 SELEX + 51952564 51952571 7.0E-06 AGATAAGA 8 POU2F2_POU_DBD_monomeric_11_1 SELEX - 51952467 51952477 7.0E-06 TTATGTTAATC 11 MAFF_bZIP_DBD_dimeric_15_1 SELEX + 51954869 51954883 7.0E-06 ATCCTGTTTCAGCAT 15 POU3F4_POU_DBD_monomeric_9_1 SELEX - 51952468 51952476 5.0E-06 TATGTTAAT 9 GATA4_GATA_DBD_monomeric_8_1 SELEX + 51952564 51952571 7.0E-06 AGATAAGA 8 TCF7L1_HMG_full_monomeric_12_1 SELEX + 51954540 51954551 2.0E-06 AAAGATCAAGGG 12 LEF1_HMG_DBD_monomeric_15_1 SELEX + 51954540 51954554 4.0E-06 AAAGATCAAGGGCCT 15 POU3F3_POU_DBD_monomeric_13_1 SELEX - 51952466 51952478 8.0E-06 CTTATGTTAATCA 13 SOX8_HMG_full_dimeric_13_1 SELEX - 51952383 51952395 1.0E-05 GTGAGTTATAGTC 13 Esrra_nuclearreceptor_DBD_dimeric_17_1 SELEX - 51954715 51954731 1.0E-05 AAGGTTCAGCAAGGTCA 17 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 51952460 51952474 0.0E+00 GTTTAATGATTAACA 15 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 51952460 51952474 0.0E+00 TGTTAATCATTAAAC 15 HOXC11_homeodomain_full_monomeric_11_2 SELEX + 51954563 51954573 6.0E-06 TGCCATAAAAT 11 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX - 51954714 51954723 1.0E-05 GCAAGGTCAT 10 CTCF_C2H2_full_monomeric_17_1 SELEX - 51952669 51952685 2.0E-06 TCTGCCCTCTAGTGGTC 17 SOX7_HMG_full_dimeric_17_1 SELEX - 51954373 51954389 3.0E-06 TAACAATTTTTGTGCTG 17 Gata1_MA0035.2 JASPAR + 51952562 51952572 5.0E-06 CCAGATAAGAA 11 GATA3_GATA_full_monomeric_8_1 SELEX + 51952564 51952571 7.0E-06 AGATAAGA 8 HNF1B_homeodomain_full_dimeric_13_1 SELEX + 51952461 51952473 0.0E+00 TTTAATGATTAAC 13 HNF1B_homeodomain_full_dimeric_13_1 SELEX - 51952461 51952473 0.0E+00 GTTAATCATTAAA 13 POU3F1_POU_DBD_monomeric_12_1 SELEX - 51952466 51952477 1.0E-06 TTATGTTAATCA 12 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX + 51954564 51954572 4.0E-06 GCCATAAAA 9 NFIB_NFI_full_dimeric_15_1 SELEX - 51954789 51954803 5.0E-06 TGGGCAAGCTGCCAG 15 HOXB13_homeodomain_DBD_monomeric_11_1 SELEX + 51952729 51952739 6.0E-06 ACTCGTAAATA 11 HOXA13_homeodomain_full_monomeric_11_1 SELEX + 51952729 51952739 2.0E-06 ACTCGTAAATA 11 POU2F1_POU_DBD_monomeric_12_1 SELEX - 51952467 51952478 7.0E-06 CTTATGTTAATC 12 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX - 51954713 51954723 1.0E-05 GCAAGGTCATC 11 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 51954360 51954369 1.0E-05 CTTATAAAAT 10 Sox11_HMG_DBD_dimeric_15_1 SELEX - 51954374 51954388 6.0E-06 AACAATTTTTGTGCT 15 VDR_nuclearreceptor_full_dimeric_16_1 SELEX - 51954715 51954730 1.0E-06 AGGTTCAGCAAGGTCA 16 HOXD12_homeodomain_DBD_monomeric_11_1 SELEX + 51952729 51952739 5.0E-06 ACTCGTAAATA 11 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 51952460 51952474 0.0E+00 GTTTAATGATTAACA 15 HNF1B_homeodomain_full_dimeric_15_1 SELEX - 51952460 51952474 0.0E+00 TGTTAATCATTAAAC 15 POU3F2_POU_DBD_monomeric_12_1 SELEX - 51952466 51952477 1.0E-06 TTATGTTAATCA 12 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX + 51954563 51954573 9.0E-06 TGCCATAAAAT 11 CDX2_homeodomain_DBD_monomeric_9_1 SELEX + 51954564 51954572 8.0E-06 GCCATAAAA 9 CDX1_homeodomain_DBD_monomeric_9_1 SELEX + 51954564 51954572 8.0E-06 GCCATAAAA 9 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX + 51954563 51954573 9.0E-06 TGCCATAAAAT 11 HNF1A_MA0046.1 JASPAR - 51952461 51952474 1.0E-06 TGTTAATCATTAAA 14 SOX9_HMG_full_dimeric_17_1 SELEX - 51954373 51954389 4.0E-06 TAACAATTTTTGTGCTG 17 V_HOXA9_01_M01351 TRANSFAC + 51954561 51954577 2.0E-06 TTTGCCATAAAATTCAT 17 V_CEBPG_Q6_M00622 TRANSFAC - 51952571 51952583 8.0E-06 TTTACTTAAAATT 13 V_EVI1_05_M00082 TRANSFAC + 51951727 51951737 8.0E-06 AGACAAAATAT 11 V_SOX30_03_M02804 TRANSFAC + 51954051 51954066 5.0E-06 AAAGGACAATGAATCA 16 V_HMGIY_Q3_M01010 TRANSFAC - 51952566 51952580 7.0E-06 ACTTAAAATTCTTAT 15 V_BCL6_01_M01183 TRANSFAC - 51954043 51954058 9.0E-06 TGTCCTTTATTTCTTT 16 V_SATB1_Q3_M01723 TRANSFAC + 51954045 51954060 1.0E-06 AGAAATAAAGGACAAT 16 V_SRY_02_M00160 TRANSFAC - 51954034 51954045 5.0E-06 TTTTACAATAGA 12 V_HNF4ALPHA_Q6_M00638 TRANSFAC - 51952431 51952443 1.0E-06 CTGAACTTTTACT 13 V_POU3F2_02_M00464 TRANSFAC - 51952468 51952477 0.0E+00 TTATGTTAAT 10 V_MAF_Q6_M00648 TRANSFAC + 51954084 51954099 6.0E-06 TAAAAGGAAATGTTGT 16 V_GATA_C_M00203 TRANSFAC + 51952564 51952574 1.0E-06 AGATAAGAATT 11 V_HOXD13_01_M01404 TRANSFAC + 51954357 51954372 2.0E-06 GTGCTTATAAAATTCT 16 V_HOXD13_01_M01404 TRANSFAC + 51954561 51954576 8.0E-06 TTTGCCATAAAATTCA 16 V_HOXD13_01_M01404 TRANSFAC + 51954843 51954858 1.0E-06 ACCTTAATAAAATCCT 16 V_CDX_Q5_M00991 TRANSFAC + 51954036 51954053 0.0E+00 TATTGTAAAAGAAATAAA 18 V_HOXC13_01_M01317 TRANSFAC + 51954356 51954371 5.0E-06 AGTGCTTATAAAATTC 16 V_CDP_04_M01344 TRANSFAC - 51952463 51952477 3.0E-06 TTATGTTAATCATTA 15 V_SOX7_03_M02807 TRANSFAC - 51954028 51954049 3.0E-06 TTTCTTTTACAATAGAGCTTGA 22 V_SOX7_03_M02807 TRANSFAC + 51954048 51954069 1.0E-06 AATAAAGGACAATGAATCATTT 22 V_HOXB13_01_M01467 TRANSFAC + 51954843 51954858 1.0E-05 ACCTTAATAAAATCCT 16 V_HNF1_Q6_M00790 TRANSFAC - 51952458 51952475 0.0E+00 ATGTTAATCATTAAACTT 18 V_HNF1_Q6_M00790 TRANSFAC + 51952459 51952476 0.0E+00 AGTTTAATGATTAACATA 18 V_SOX8_04_M02912 TRANSFAC + 51952689 51952702 6.0E-06 CCATTCATGAACAG 14 V_HNF1B_04_M02266 TRANSFAC + 51952462 51952473 0.0E+00 TTAATGATTAAC 12 V_HNF1_Q6_01_M01011 TRANSFAC + 51952457 51952477 0.0E+00 TAAGTTTAATGATTAACATAA 21 V_HNF1_Q6_01_M01011 TRANSFAC - 51952457 51952477 0.0E+00 TTATGTTAATCATTAAACTTA 21 V_ELF5_01_M01197 TRANSFAC + 51954085 51954095 6.0E-06 AAAAGGAAATG 11 V_CUX1_04_M02959 TRANSFAC - 51952463 51952477 3.0E-06 TTATGTTAATCATTA 15 V_IRF3_06_M02871 TRANSFAC + 51952661 51952674 2.0E-06 AGAGAAAGGACCAC 14 V_SOX12_04_M02900 TRANSFAC + 51951723 51951738 8.0E-06 ACACAGACAAAATATA 16 V_GATA1_09_M02254 TRANSFAC + 51952562 51952572 5.0E-06 CCAGATAAGAA 11 V_TCF7_03_M02817 TRANSFAC + 51952510 51952526 7.0E-06 TAATGACCAAAGGAAAA 17 V_EBF1_01_M02267 TRANSFAC + 51952260 51952269 5.0E-06 ACTCAAGGGA 10 V_NKX3A_01_M00451 TRANSFAC + 51952573 51952584 4.0E-06 TTTTAAGTAAAA 12 V_CTCF_02_M01259 TRANSFAC + 51952665 51952684 0.0E+00 AAAGGACCACTAGAGGGCAG 20 V_SOX11_03_M02795 TRANSFAC + 51954050 51954066 7.0E-06 TAAAGGACAATGAATCA 17 V_NR1B1_Q6_M02110 TRANSFAC + 51952435 51952444 6.0E-06 AAAGTTCAGA 10 V_CTCF_01_M01200 TRANSFAC + 51952667 51952686 1.0E-06 AGGACCACTAGAGGGCAGAT 20 V_AP1_Q2_01_M00924 TRANSFAC + 51952258 51952269 5.0E-06 TGACTCAAGGGA 12 V_HNF4A_02_M02868 TRANSFAC + 51952578 51952593 3.0E-06 AGTAAAAGTCCACCCA 16 V_SOX17_04_M02904 TRANSFAC + 51952685 51952701 5.0E-06 ATCCCCATTCATGAACA 17 V_HOXD9_Q2_M01834 TRANSFAC - 51952461 51952470 5.0E-06 AATCATTAAA 10 V_HOXD9_Q2_M01834 TRANSFAC + 51954533 51954542 4.0E-06 AAGCATAAAA 10 V_GATA1_05_M00346 TRANSFAC - 51952327 51952336 5.0E-06 CCAGATAACA 10 V_IPF1_05_M01255 TRANSFAC - 51952459 51952470 1.0E-06 AATCATTAAACT 12 V_HNF1_01_M00132 TRANSFAC - 51952460 51952474 0.0E+00 TGTTAATCATTAAAC 15 V_ZBTB3_03_M02825 TRANSFAC + 51954573 51954589 6.0E-06 TTCATCACTGCATTTGG 17 V_SIRT6_01_M01797 TRANSFAC + 51952564 51952571 7.0E-06 AGATAAGA 8 V_MYOGNF1_01_M00056 TRANSFAC - 51954509 51954537 0.0E+00 TGCTTCTTGTAATTGGAGATCTGCAAGGT 29 V_NCX_01_M00484 TRANSFAC - 51954522 51954531 1.0E-05 TTGTAATTGG 10 V_ESRRA_03_M02748 TRANSFAC - 51954710 51954726 6.0E-06 TCAGCAAGGTCATCAGG 17 V_SIX4_01_M01374 TRANSFAC + 51953966 51953982 7.0E-06 CCTAATGACACCCAGGA 17 V_SOX8_03_M02808 TRANSFAC - 51954050 51954066 2.0E-06 TGATTCATTGTCCTTTA 17 V_GATA2_03_M00349 TRANSFAC + 51952562 51952571 9.0E-06 CCAGATAAGA 10 V_VDR_Q3_M00444 TRANSFAC - 51954715 51954729 3.0E-06 GGTTCAGCAAGGTCA 15 V_HNF1A_Q5_M02013 TRANSFAC - 51952464 51952474 1.0E-06 TGTTAATCATT 11 V_SATB1_01_M01232 TRANSFAC - 51952503 51952514 1.0E-05 CATTACTAACAA 12 V_HMEF2_Q6_M00406 TRANSFAC - 51952452 51952467 6.0E-06 CATTAAACTTACCCAT 16 V_CP2_01_M00072 TRANSFAC - 51952333 51952343 2.0E-06 GCTCTAACCAG 11 V_HOXA10_01_M01464 TRANSFAC + 51954561 51954576 0.0E+00 TTTGCCATAAAATTCA 16 V_MAFK_04_M02880 TRANSFAC - 51952530 51952544 8.0E-06 GAGAAAAATGTAAGA 15 V_CMAF_01_M01070 TRANSFAC - 51954364 51954382 5.0E-06 TTTTGTGCTGAGAATTTTA 19 V_GATA6_04_M02757 TRANSFAC - 51952323 51952339 1.0E-05 TAACCAGATAACATGTC 17 V_GATA6_04_M02757 TRANSFAC + 51952559 51952575 9.0E-06 GCCCCAGATAAGAATTT 17 V_ZFP128_04_M02932 TRANSFAC + 51952754 51952767 7.0E-06 GTTATTCATATACC 14 V_ZFP128_04_M02932 TRANSFAC - 51952754 51952767 4.0E-06 GGTATATGAATAAC 14 V_HOXD10_01_M01375 TRANSFAC + 51954561 51954577 4.0E-06 TTTGCCATAAAATTCAT 17 V_HNF1A_01_M02162 TRANSFAC - 51952461 51952474 1.0E-06 TGTTAATCATTAAA 14 V_DTYPEPA_B_M00334 TRANSFAC - 51952460 51952469 5.0E-06 ATCATTAAAC 10 V_GLIS2_04_M02863 TRANSFAC + 51954034 51954047 9.0E-06 TCTATTGTAAAAGA 14 V_SMAD1_01_M01590 TRANSFAC + 51952659 51952670 7.0E-06 CAAGAGAAAGGA 12 V_NF1_Q6_M00193 TRANSFAC - 51952404 51952421 4.0E-06 ATTTGGCTGGGACACAAA 18 V_NANOG_02_M01247 TRANSFAC + 51954041 51954060 9.0E-06 TAAAAGAAATAAAGGACAAT 20 V_NANOG_02_M01247 TRANSFAC + 51954048 51954067 4.0E-06 AATAAAGGACAATGAATCAT 20 V_GATA1_06_M00347 TRANSFAC + 51952562 51952571 5.0E-06 CCAGATAAGA 10 V_HOXC9_01_M01416 TRANSFAC - 51952458 51952473 6.0E-06 GTTAATCATTAAACTT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.