Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CFP Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 5199 complement factor properdin chrX - 47488869 - 47494704 47489369 Transcription Factor Binding Sites   Download all TFBS in the CFP promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 47488668 47488686 9.0E-06 CTTCCACTAGATGCCAGTA 19 FOXA1_MA0148.1 JASPAR + 47490100 47490110 9.0E-06 TGTTTGTTTTG 11 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 47490098 47490109 3.0E-06 AAAACAAACAAA 12 FOXL1_forkhead_full_dimeric_13_1 SELEX - 47490099 47490111 7.0E-06 ACAAAACAAACAA 13 ZNF435_C2H2_full_dimeric_18_1 SELEX - 47493901 47493918 2.0E-06 AGTGATGTCAGAGCACCA 18 SOX8_HMG_full_dimeric_15_1 SELEX + 47488565 47488579 1.0E-05 AGCTATGTCAGTGGT 15 SOX9_HMG_DBD_monomeric_9_1 SELEX - 47489899 47489907 9.0E-06 GAACAATGG 9 Klf4_MA0039.2 JASPAR + 47489097 47489106 5.0E-06 TGGGTGGGGC 10 TBX1_TBX_DBD_dimeric_19_1 SELEX + 47488588 47488606 1.0E-06 AGGGGTGATTTTGACCCCC 19 TBX1_TBX_DBD_dimeric_19_1 SELEX - 47488588 47488606 1.0E-06 GGGGGTCAAAATCACCCCT 19 USF1_bHLH_DBD_dimeric_10_1 SELEX - 47493811 47493820 8.0E-06 ACCACGTGAC 10 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 47490100 47490110 1.0E-05 CAAAACAAACA 11 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 47493316 47493330 9.0E-06 TATAAATCAGTGACT 15 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX - 47488582 47488599 7.0E-06 AAAATCACCCCTGATTGA 18 SP1_MA0079.2 JASPAR + 47488731 47488740 3.0E-06 CCCCTCCCCC 10 FOXI1_MA0042.1 JASPAR + 47490097 47490108 1.0E-06 TTTTGTTTGTTT 12 TFEB_bHLH_full_dimeric_10_1 SELEX - 47493811 47493820 4.0E-06 ACCACGTGAC 10 SOX14_HMG_DBD_dimeric_15_1 SELEX + 47493947 47493961 9.0E-06 CTGACTTCCAGTTAC 15 NFATC1_NFAT_full_dimeric_15_1 SELEX + 47489613 47489627 4.0E-06 TTCCCTATGTGGAAA 15 NFATC1_NFAT_full_dimeric_15_1 SELEX - 47489613 47489627 3.0E-06 TTTCCACATAGGGAA 15 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 47490100 47490110 6.0E-06 CAAAACAAACA 11 ZNF143_C2H2_DBD_monomeric_16_1 SELEX + 47488706 47488721 2.0E-06 ATCCCACAATACACAG 16 TBX20_TBX_full_dimeric_16_1 SELEX - 47493802 47493817 8.0E-06 ACGTGACAGTGTGTGA 16 TBX15_TBX_DBD_dimeric_19_1 SELEX + 47488588 47488606 1.0E-06 AGGGGTGATTTTGACCCCC 19 TBX15_TBX_DBD_dimeric_19_1 SELEX - 47488588 47488606 1.0E-06 GGGGGTCAAAATCACCCCT 19 Foxd3_MA0041.1 JASPAR + 47490097 47490108 1.0E-06 TTTTGTTTGTTT 12 TBX2_TBX_full_dimeric_18_1 SELEX - 47489582 47489599 3.0E-06 GGTGTTAAGTGACTCACC 18 FEV_MA0156.1 JASPAR - 47489416 47489423 1.0E-05 CAGGAAAT 8 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 47489984 47489994 6.0E-06 ACCCTCAGGCA 11 MAX_MA0058.1 JASPAR - 47493812 47493821 4.0E-06 GACCACGTGA 10 TFE3_bHLH_DBD_dimeric_10_1 SELEX - 47493811 47493820 3.0E-06 ACCACGTGAC 10 RORA_nuclearreceptor_DBD_dimeric_20_1 SELEX - 47489369 47489388 1.0E-05 GAGGGGACAGGGTGGGGTCA 20 ZNF410_C2H2_DBD_monomeric_17_1 SELEX + 47488703 47488719 0.0E+00 AACATCCCACAATACAC 17 SOX9_MA0077.1 JASPAR - 47489899 47489907 5.0E-06 GAACAATGG 9 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 47490100 47490112 8.0E-06 GACAAAACAAACA 13 NFIA_NFI_full_monomeric_10_1 SELEX - 47488614 47488623 2.0E-06 ATTGCCAAAT 10 Sox1_HMG_DBD_dimeric_15_2 SELEX + 47493947 47493961 9.0E-06 CTGACTTCCAGTTAC 15 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 47490097 47490110 8.0E-06 CAAAACAAACAAAA 14 V_FOXP1_01_M00987 TRANSFAC + 47490099 47490118 5.0E-06 TTGTTTGTTTTGTCGAGATG 20 V_AREB6_01_M00412 TRANSFAC - 47488716 47488728 2.0E-06 TGCTTACCTGTGT 13 V_HNF3B_01_M00131 TRANSFAC - 47493307 47493321 8.0E-06 GTGACTATTTGTGTA 15 V_USF_Q6_M00187 TRANSFAC + 47493811 47493820 5.0E-06 GTCACGTGGT 10 V_TBX15_01_M01263 TRANSFAC + 47488588 47488606 2.0E-06 AGGGGTGATTTTGACCCCC 19 V_TBX15_01_M01263 TRANSFAC - 47488588 47488606 2.0E-06 GGGGGTCAAAATCACCCCT 19 V_HSF1_Q6_M01023 TRANSFAC + 47489025 47489041 4.0E-06 TTGCCGGAGGATTCTTC 17 V_ZFP410_04_M02936 TRANSFAC + 47489404 47489420 9.0E-06 TCTCCCCTCCCCATTTC 17 V_DMRT3_01_M01148 TRANSFAC + 47489444 47489458 3.0E-06 TGTTTGTTACTATAT 15 V_CEBP_Q3_M00770 TRANSFAC + 47488612 47488623 7.0E-06 ACATTTGGCAAT 12 V_SOX30_03_M02804 TRANSFAC - 47489895 47489910 1.0E-06 ATGGAACAATGGATAG 16 V_ZEC_01_M01081 TRANSFAC + 47488633 47488645 2.0E-06 CATGTTTGGTTGT 13 V_FOXD3_01_M00130 TRANSFAC + 47490097 47490108 1.0E-06 TTTTGTTTGTTT 12 V_AP4_Q6_M00176 TRANSFAC + 47488646 47488655 2.0E-06 CACAGCTGGT 10 V_AP2_Q6_01_M00915 TRANSFAC - 47489862 47489874 3.0E-06 CCCTCCCCAGGCT 13 V_HNF3_Q6_01_M01012 TRANSFAC + 47490095 47490112 0.0E+00 GCTTTTGTTTGTTTTGTC 18 V_FOXJ1_03_M02750 TRANSFAC - 47490094 47490109 4.0E-06 AAAACAAACAAAAGCT 16 V_SP1_03_M02281 TRANSFAC + 47488731 47488740 3.0E-06 CCCCTCCCCC 10 V_HFH4_01_M00742 TRANSFAC + 47490097 47490109 0.0E+00 TTTTGTTTGTTTT 13 V_GKLF_02_M01588 TRANSFAC - 47489095 47489106 3.0E-06 GCCCCACCCACC 12 V_HEN1_01_M00068 TRANSFAC - 47489908 47489929 3.0E-06 GTTGTCCCCAGCTGGGCCCATG 22 V_HNF4A_04_M02764 TRANSFAC + 47489647 47489663 4.0E-06 ATGACGGGGTCAACCTC 17 V_PU1_Q4_M01172 TRANSFAC - 47489323 47489341 5.0E-06 GCCTCTAGGTTCCTCTTTC 19 V_PU1_Q4_M01172 TRANSFAC - 47489844 47489862 8.0E-06 TCCTGCCACTTCCCTTTCT 19 V_CEBPB_01_M00109 TRANSFAC + 47488612 47488625 6.0E-06 ACATTTGGCAATGT 14 V_FOXA2_02_M02853 TRANSFAC - 47490095 47490109 5.0E-06 AAAACAAACAAAAGC 15 V_ZFP105_03_M02827 TRANSFAC - 47490096 47490110 9.0E-06 CAAAACAAACAAAAG 15 V_TBX18_01_M01262 TRANSFAC - 47488588 47488606 1.0E-06 GGGGGTCAAAATCACCCCT 19 V_HNF3G_Q4_M02015 TRANSFAC + 47489444 47489451 7.0E-06 TGTTTGTT 8 V_HNF3G_Q4_M02015 TRANSFAC + 47490100 47490107 7.0E-06 TGTTTGTT 8 V_RXRA_03_M02791 TRANSFAC + 47489364 47489380 6.0E-06 TGCTTTGACCCCACCCT 17 V_MYCMAX_02_M00123 TRANSFAC - 47493810 47493821 7.0E-06 GACCACGTGACA 12 V_GFI1_01_M00250 TRANSFAC - 47493311 47493334 6.0E-06 TGACTATAAATCAGTGACTATTTG 24 V_HNF1_Q6_M00790 TRANSFAC + 47493315 47493332 3.0E-06 TAGTCACTGATTTATAGT 18 V_HNF1_Q6_M00790 TRANSFAC + 47493870 47493887 6.0E-06 TGGTTTCTTATGAACTGT 18 V_SOX7_04_M02911 TRANSFAC + 47488549 47488570 5.0E-06 GTGCTCAATATGTGTGAGCTAT 22 V_ZBP89_Q4_M01816 TRANSFAC + 47488732 47488741 4.0E-06 CCCTCCCCCA 10 V_IRF3_Q3_M01279 TRANSFAC + 47489608 47489620 8.0E-06 TCAGTTTCCCTAT 13 V_MAZ_Q6_01_M02023 TRANSFAC - 47489403 47489416 5.0E-06 TGGGGAGGGGAGAG 14 V_HNF3_Q6_M00791 TRANSFAC - 47490098 47490110 0.0E+00 CAAAACAAACAAA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 47490100 47490110 1.0E-06 TGTTTGTTTTG 11 V_MATH1_Q2_M01716 TRANSFAC + 47488647 47488656 6.0E-06 ACAGCTGGTG 10 V_AP4_Q5_M00175 TRANSFAC + 47488646 47488655 6.0E-06 CACAGCTGGT 10 V_SPIB_01_M01204 TRANSFAC + 47489322 47489338 3.0E-06 GGAAAGAGGAACCTAGA 17 V_HFH1_01_M00129 TRANSFAC + 47490097 47490108 7.0E-06 TTTTGTTTGTTT 12 V_ATF3_Q6_M00513 TRANSFAC + 47493906 47493919 5.0E-06 CTCTGACATCACTC 14 V_SOX11_03_M02795 TRANSFAC - 47489895 47489911 7.0E-06 CATGGAACAATGGATAG 17 V_SOX11_03_M02795 TRANSFAC - 47490092 47490108 7.0E-06 AAACAAACAAAAGCTTA 17 V_SOX9_B1_M00410 TRANSFAC - 47489897 47489910 1.0E-06 ATGGAACAATGGAT 14 V_USF_Q6_01_M00796 TRANSFAC - 47493810 47493821 0.0E+00 GACCACGTGACA 12 V_GATA1_05_M00346 TRANSFAC + 47489992 47490001 2.0E-06 GCAGATAACA 10 V_RARA_04_M02891 TRANSFAC - 47489365 47489380 6.0E-06 AGGGTGGGGTCAAAGC 16 V_CEBPA_01_M00116 TRANSFAC - 47488612 47488625 8.0E-06 ACATTGCCAAATGT 14 V_OSR2_04_M02889 TRANSFAC + 47488662 47488677 9.0E-06 AATTGCTACTGGCATC 16 V_GFI1B_01_M01058 TRANSFAC - 47493317 47493328 1.0E-05 TAAATCAGTGAC 12 V_ESRRA_04_M02852 TRANSFAC - 47489364 47489380 7.0E-06 AGGGTGGGGTCAAAGCA 17 V_ASCL2_04_M02841 TRANSFAC + 47489368 47489383 2.0E-06 TTGACCCCACCCTGTC 16 V_ASCL2_04_M02841 TRANSFAC + 47489403 47489418 0.0E+00 CTCTCCCCTCCCCATT 16 V_FOX_Q2_M00809 TRANSFAC + 47490097 47490109 0.0E+00 TTTTGTTTGTTTT 13 V_ETS1_B_M00339 TRANSFAC - 47489410 47489424 1.0E-05 ACAGGAAATGGGGAG 15 V_ZFP281_01_M01597 TRANSFAC - 47488731 47488741 1.0E-06 TGGGGGAGGGG 11 V_CEBPB_Q6_M01896 TRANSFAC - 47493672 47493681 4.0E-06 TTGTGAAATA 10 V_SOX21_04_M02907 TRANSFAC + 47489896 47489912 6.0E-06 TATCCATTGTTCCATGG 17 V_HFH3_01_M00289 TRANSFAC + 47490097 47490109 1.0E-06 TTTTGTTTGTTTT 13 V_VDR_Q3_M00444 TRANSFAC - 47489380 47489394 1.0E-05 GAGGCAGAGGGGACA 15 V_EKLF_Q5_M01874 TRANSFAC + 47489372 47489381 9.0E-06 CCCCACCCTG 10 V_HNF3B_Q6_M02014 TRANSFAC + 47490099 47490107 1.0E-05 TTGTTTGTT 9 V_SRY_05_M02917 TRANSFAC - 47489896 47489912 4.0E-06 CCATGGAACAATGGATA 17 V_UF1H3BETA_Q6_M01068 TRANSFAC - 47488730 47488743 2.0E-06 GCTGGGGGAGGGGA 14 V_CEBP_Q2_01_M00912 TRANSFAC + 47493673 47493684 3.0E-06 ATTTCACAATCA 12 V_FEV_01_M02269 TRANSFAC - 47489416 47489423 1.0E-05 CAGGAAAT 8 V_AR_Q6_M00962 TRANSFAC - 47490035 47490043 6.0E-06 TGAGCACAT 9 V_DMRT5_01_M01150 TRANSFAC + 47489445 47489459 0.0E+00 GTTTGTTACTATATC 15 V_TCF11_01_M00285 TRANSFAC - 47489639 47489651 2.0E-06 GTCATTATGTTAG 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.