Search TFs
or Genes
Construction
and Validation
Optimal
Promoter Size
Download Citation and
Contact

PDHA1


EntrezDescriptionChrom.StrandPromoter
(Start - Stop)
TSS
5160 pyruvate dehydrogenase (lipoamide) alpha 1 chrX +19357010 - 19362510 19362010

Transcription Factor Binding Sites

 
Download all TFBS in the PDHA1 promoter
 
MotifSourceStrandStartStop PValueMatch
Sequence
Overlap w/
Footprints
EOMES_TBX_DBD_dimeric_20_1 SELEX + 19362398 19362417 5.0E-06 TCACGCCAAGGTCCGTGTGA 20
EOMES_TBX_DBD_dimeric_20_1 SELEX - 19362398 19362417 4.0E-06 TCACACGGACCTTGGCGTGA 20
EOMES_TBX_DBD_dimeric_20_1 SELEX + 19366235 19366254 1.0E-05 TTACACGTCAGTGTGTGAGA 20
EOMES_TBX_DBD_dimeric_20_1 SELEX - 19366235 19366254 7.0E-06 TCTCACACACTGACGTGTAA 20
EVX2_homeodomain_DBD_monomeric_10_1 SELEX + 19366087 19366096 1.0E-05 CGTAATTAGC 10
Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX - 19360537 19360546 5.0E-06 GCCATTAAAA 10
KLF16_C2H2_DBD_monomeric_11_1 SELEX - 19361960 19361970 1.0E-05 GCCCCGCCCCC 11
TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 19361943 19361953 8.0E-06 AGCCTCAGGCC 11
HOMEZ_HOMEZ_DBD_monomer-or-dimer_12_1 SELEX + 19361490 19361501 1.0E-05 AAAAAGATTTTT 12
Pax4_MA0068.1 JASPAR - 19366276 19366305 0.0E+00 AAAATTTATCCAGTAGTATTATCATACTAT 30
ZNF238_C2H2_full_monomeric_13_1 SELEX + 19361626 19361638 2.0E-06 AAACCAGATGTTC 13
SPIB_ETS_DBD_monomeric_14_1 SELEX - 19362417 19362430 8.0E-06 AGAAGGGGGAAGTT 14
RORA_nuclearreceptor_DBD_dimeric_19_1 SELEX - 19360607 19360625 9.0E-06 TAATTTGGGCACTGGGCCA 19
NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX + 19361586 19361601 7.0E-06 TGATCTTTTAAAGACA 16
SP1_MA0079.2 JASPAR - 19361960 19361969 7.0E-06 CCCCGCCCCC 10
SP4_C2H2_full_monomeric_17_1 SELEX + 19361858 19361874 3.0E-06 CAAGCCCCGCCTCCTCA 17
NFATC1_NFAT_full_dimeric_20_1 SELEX + 19361485 19361504 5.0E-06 AGAGAAAAAAGATTTTTCCC 20
NFATC1_NFAT_full_dimeric_20_1 SELEX - 19361487 19361506 3.0E-06 ATGGGAAAAATCTTTTTTCT 20
Tcf7_HMG_DBD_monomeric_12_1 SELEX - 19360655 19360666 7.0E-06 GAAGTTCAAAGC 12
PRRX1_homeodomain_full_dimeric_11_1 SELEX - 19366089 19366099 1.0E-05 AAAGCTAATTA 11
SPI1_ETS_full_monomeric_14_1 SELEX - 19362417 19362430 6.0E-06 AGAAGGGGGAAGTT 14
Zfx_MA0146.1 JASPAR + 19362523 19362536 8.0E-06 GTGGCCTCGGCCTC 14
FOXO1_forkhead_DBD_dimeric_14_1 SELEX - 19361527 19361540 9.0E-06 AAAAATTTGTTTCC 14
V_MINI20_B_M00324 TRANSFAC - 19361878 19361898 1.0E-06 TTCCGACGCCACGCCGCGGGC 21
V_MEIS1BHOXA9_02_M00421 TRANSFAC + 19362017 19362030 7.0E-06 TGACGTTATTACGA 14
V_SPI1_01_M01203 TRANSFAC - 19362414 19362430 7.0E-06 AGAAGGGGGAAGTTCAC 17
V_MSX3_01_M01341 TRANSFAC - 19366085 19366100 9.0E-06 GAAAGCTAATTACGTA 16
V_FOXP3_Q4_M00992 TRANSFAC - 19366139 19366155 5.0E-06 GAAGAGTTAAGACTGAT 17
V_CDX2_Q5_01_M01659 TRANSFAC - 19366210 19366220 6.0E-06 TCCATAAAAAG 11
V_MEQCJUN_02_M02048 TRANSFAC - 19362016 19362026 4.0E-06 AATAACGTCAT 11
V_TCFE2A_04_M02927 TRANSFAC + 19361625 19361641 2.0E-06 GAAACCAGATGTTCTGT 17
TAL1_TCF3_MA0091.1 JASPAR + 19361626 19361637 7.0E-06 AAACCAGATGTT 12
TAL1_TCF3_MA0091.1 JASPAR - 19361628 19361639 0.0E+00 AGAACATCTGGT 12
V_NRSF_Q4_M01028 TRANSFAC - 19361717 19361735 6.0E-06 CTCCTGCCGGTGCTGCAGC 19
V_NRSF_Q4_M01028 TRANSFAC - 19361720 19361738 5.0E-06 CTACTCCTGCCGGTGCTGC 19
V_SP1_Q6_01_M00931 TRANSFAC + 19361961 19361970 4.0E-06 GGGGCGGGGC 10
V_CEBP_C_M00201 TRANSFAC + 19366177 19366194 3.0E-06 TGGATTAGGTAAGGTATG 18
V_GATA1_03_M00127 TRANSFAC - 19361660 19361673 1.0E-06 ATGAAGATTAGCAG 14
V_HOXD1_01_M01448 TRANSFAC - 19366083 19366099 0.0E+00 AAAGCTAATTACGTATA 17
V_HOXD1_01_M01448 TRANSFAC + 19366084 19366100 3.0E-06 ATACGTAATTAGCTTTC 17
V_EAR2_Q2_M01728 TRANSFAC - 19361595 19361608 3.0E-06 CTAACTTTGTCTTT 14
V_SP1_03_M02281 TRANSFAC - 19361960 19361969 7.0E-06 CCCCGCCCCC 10
V_HOXA2_01_M01402 TRANSFAC - 19366083 19366098 4.0E-06 AAGCTAATTACGTATA 16
V_HOXC6_01_M01406 TRANSFAC - 19366083 19366099 8.0E-06 AAAGCTAATTACGTATA 17
V_EVX1_01_M01475 TRANSFAC + 19366084 19366100 8.0E-06 ATACGTAATTAGCTTTC 17
V_TCFAP2E_04_M02926 TRANSFAC + 19361481 19361494 6.0E-06 AACTAGAGAAAAAA 14
V_DLX5_01_M01388 TRANSFAC + 19366085 19366100 4.0E-06 TACGTAATTAGCTTTC 16
V_LHX8_01_M01440 TRANSFAC + 19366084 19366100 5.0E-06 ATACGTAATTAGCTTTC 17
V_AR_03_M00956 TRANSFAC + 19361619 19361645 7.0E-06 TTTACAGAAACCAGATGTTCTGTCTTT 27
V_EVX2_01_M01386 TRANSFAC + 19366083 19366099 2.0E-06 TATACGTAATTAGCTTT 17
V_EVX2_01_M01386 TRANSFAC - 19366084 19366100 2.0E-06 GAAAGCTAATTACGTAT 17
V_GC_01_M00255 TRANSFAC - 19361859 19361872 0.0E+00 AGGAGGCGGGGCTT 14
V_GC_01_M00255 TRANSFAC - 19361907 19361920 5.0E-06 AGAGGGAGGGGCTG 14
V_HOXA6_01_M01392 TRANSFAC - 19366083 19366098 3.0E-06 AAGCTAATTACGTATA 16
V_POU3F2_01_M00463 TRANSFAC + 19361531 19361544 9.0E-06 ACAAATTTTTTGAT 14
V_SP1_Q6_M00196 TRANSFAC - 19361860 19361872 6.0E-06 AGGAGGCGGGGCT 13
V_HOXA1_01_M01487 TRANSFAC - 19366085 19366100 8.0E-06 GAAAGCTAATTACGTA 16
V_HOXB6_01_M01460 TRANSFAC + 19366083 19366098 1.0E-06 TATACGTAATTAGCTT 16
V_AP2BETA_Q3_M01858 TRANSFAC - 19361995 19362010 5.0E-06 GCGCCGGGCCGCGGGC 16
V_EGR1_Q6_M01873 TRANSFAC + 19361958 19361967 4.0E-06 GCGGGGGCGG 10
V_TATA_C_M00216 TRANSFAC - 19361590 19361599 3.0E-06 TCTTTAAAAG 10
V_TATA_C_M00216 TRANSFAC - 19366211 19366220 7.0E-06 TCCATAAAAA 10
V_SFPI1_04_M02896 TRANSFAC + 19361616 19361629 8.0E-06 CCATTTACAGAAAC 14
V_OCT1_08_M01354 TRANSFAC - 19366085 19366100 1.0E-05 GAAAGCTAATTACGTA 16
V_GR_01_M00955 TRANSFAC + 19361619 19361645 8.0E-06 TTTACAGAAACCAGATGTTCTGTCTTT 27
V_TAL1BETAE47_01_M00065 TRANSFAC + 19361625 19361640 3.0E-06 GAAACCAGATGTTCTG 16
V_MUSCLE_INI_B_M00321 TRANSFAC - 19361878 19361898 2.0E-06 TTCCGACGCCACGCCGCGGGC 21
V_NKX3A_01_M00451 TRANSFAC - 19366082 19366093 9.0E-06 AATTACGTATAT 12
V_ZFP691_04_M02937 TRANSFAC + 19364289 19364305 9.0E-06 CACTAGACTCCTACCAT 17
V_TAL1BETAITF2_01_M00070 TRANSFAC + 19361625 19361640 2.0E-06 GAAACCAGATGTTCTG 16
V_TFIII_Q6_M00706 TRANSFAC - 19361912 19361920 6.0E-06 AGAGGGAGG 9
V_GLI3_01_M01596 TRANSFAC - 19362289 19362299 5.0E-06 CTGGGTGGCCC 11
V_SP4_Q5_M01273 TRANSFAC - 19361960 19361970 1.0E-06 GCCCCGCCCCC 11
V_HBP1_04_M02866 TRANSFAC + 19361498 19361514 0.0E+00 TTTTCCCATTGTCCTCT 17
V_S8_01_M00099 TRANSFAC + 19366083 19366098 2.0E-06 TATACGTAATTAGCTT 16
V_CREBP1CJUN_01_M00041 TRANSFAC + 19362017 19362024 1.0E-05 TGACGTTA 8
V_MINI19_B_M00323 TRANSFAC - 19361878 19361898 0.0E+00 TTCCGACGCCACGCCGCGGGC 21
V_POU6F1_02_M01462 TRANSFAC + 19366084 19366100 5.0E-06 ATACGTAATTAGCTTTC 17
V_TAL1ALPHAE47_01_M00066 TRANSFAC + 19361625 19361640 4.0E-06 GAAACCAGATGTTCTG 16
V_TAL1ALPHAE47_01_M00066 TRANSFAC - 19364298 19364313 1.0E-05 TCACACAGATGGTAGG 16
V_IPF1_01_M01233 TRANSFAC - 19366088 19366097 2.0E-06 AGCTAATTAC 10
V_NRSF_01_M00256 TRANSFAC - 19361647 19361667 1.0E-05 ATTAGCAGCATGCTCAGAGCC 21
V_BARX2_01_M01431 TRANSFAC - 19366083 19366098 6.0E-06 AAGCTAATTACGTATA 16
V_BARX2_01_M01431 TRANSFAC + 19366085 19366100 5.0E-06 TACGTAATTAGCTTTC 16
V_EGR1_06_M02744 TRANSFAC - 19361955 19361968 4.0E-06 CCCGCCCCCGCTAA 14
V_CHX10_01_M00437 TRANSFAC + 19366086 19366099 2.0E-06 ACGTAATTAGCTTT 14
V_TBX22_01_M01195 TRANSFAC + 19362410 19362428 6.0E-06 CCGTGTGAACTTCCCCCTT 19
V_YY1_01_M00059 TRANSFAC + 19361611 19361627 8.0E-06 GCAGACCATTTACAGAA 17
V_HOXB3_01_M01330 TRANSFAC - 19366083 19366099 1.0E-06 AAAGCTAATTACGTATA 17
V_PR_02_M00957 TRANSFAC + 19361619 19361645 5.0E-06 TTTACAGAAACCAGATGTTCTGTCTTT 27
V_SP1_Q2_01_M00933 TRANSFAC - 19361960 19361969 4.0E-06 CCCCGCCCCC 10
V_LHX4_01_M01421 TRANSFAC - 19366083 19366099 0.0E+00 AAAGCTAATTACGTATA 17
V_LHX4_01_M01421 TRANSFAC + 19366084 19366100 1.0E-06 ATACGTAATTAGCTTTC 17
V_P300_01_M00033 TRANSFAC - 19360550 19360563 1.0E-06 TAAAGGAGTGAGAG 14
V_SP1_Q4_01_M00932 TRANSFAC - 19361908 19361920 9.0E-06 AGAGGGAGGGGCT 13
V_SP1_Q4_01_M00932 TRANSFAC + 19361959 19361971 9.0E-06 CGGGGGCGGGGCA 13
V_BARX1_01_M01340 TRANSFAC - 19366083 19366098 8.0E-06 AAGCTAATTACGTATA 16
V_RNF96_01_M01199 TRANSFAC + 19361995 19362004 7.0E-06 GCCCGCGGCC 10
V_IPF1_03_M01235 TRANSFAC - 19366088 19366097 1.0E-06 AGCTAATTAC 10
V_PAX4_04_M00380 TRANSFAC - 19366278 19366307 9.0E-06 ACAAAATTTATCCAGTAGTATTATCATACT 30
V_HOX13_02_M01452 TRANSFAC - 19366083 19366098 2.0E-06 AAGCTAATTACGTATA 16
V_HOXC8_01_M01321 TRANSFAC + 19366083 19366098 8.0E-06 TATACGTAATTAGCTT 16
Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns.
Developed at the Institute for Systems Biology in the Baliga Lab.
A Django site.   Powered by PostgreSQL