Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

LSR Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 51599 lipolysis stimulated lipoprotein receptor chr19 + 35734558 - 35740058 35739558 Transcription Factor Binding Sites   Download all TFBS in the LSR promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HSF2_HSF_DBD_trimeric_13_1 SELEX - 35739770 35739782 2.0E-06 TTCTGGAAGTTTT 13 SOX21_HMG_DBD_dimeric_15_1 SELEX + 35737833 35737847 4.0E-06 AGCAATTCCATTCTT 15 GABPA_MA0062.2 JASPAR - 35739563 35739573 3.0E-06 CCGGAAGTGGG 11 SOX4_HMG_DBD_dimeric_16_1 SELEX + 35737832 35737847 2.0E-06 CAGCAATTCCATTCTT 16 SRY_HMG_DBD_dimeric_15_1 SELEX + 35737833 35737847 5.0E-06 AGCAATTCCATTCTT 15 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 35737806 35737817 2.0E-06 GTTAAAAATAGA 12 ELF4_ETS_full_monomeric_12_1 SELEX - 35739565 35739576 5.0E-06 TCCCCGGAAGTG 12 SOX8_HMG_full_dimeric_15_1 SELEX + 35737833 35737847 4.0E-06 AGCAATTCCATTCTT 15 GATA5_GATA_DBD_monomeric_8_1 SELEX + 35738625 35738632 7.0E-06 AGATAAGA 8 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 35737806 35737817 1.0E-06 GTTAAAAATAGA 12 Sox17_HMG_DBD_dimeric_15_1 SELEX + 35737833 35737847 6.0E-06 AGCAATTCCATTCTT 15 IRF5_IRF_full_monomeric_11_1 SELEX + 35738746 35738756 1.0E-06 TACCGAAACCA 11 GATA4_GATA_DBD_monomeric_8_1 SELEX + 35738625 35738632 7.0E-06 AGATAAGA 8 SCRT2_C2H2_DBD_monomeric_13_1 SELEX + 35739397 35739409 5.0E-06 TCTCAACAGGTGA 13 MEF2B_MADS_full_dimeric_12_1 SELEX + 35737806 35737817 3.0E-06 GTTAAAAATAGA 12 IRF1_MA0050.1 JASPAR + 35740251 35740262 6.0E-06 GGAAGTGAAACT 12 ELF3_ETS_full_monomeric_13_1 SELEX + 35740246 35740258 4.0E-06 TAGCAGGAAGTGA 13 MEF2A_MA0052.1 JASPAR - 35737807 35737816 3.0E-06 CTATTTTTAA 10 SOX18_HMG_full_dimeric_15_1 SELEX + 35737833 35737847 2.0E-06 AGCAATTCCATTCTT 15 SOX15_HMG_full_dimeric_15_1 SELEX + 35737833 35737847 7.0E-06 AGCAATTCCATTCTT 15 NFATC1_NFAT_full_dimeric_15_1 SELEX - 35738930 35738944 7.0E-06 TTTCCGCTTAGGAAT 15 SOX7_HMG_full_dimeric_17_1 SELEX + 35737832 35737848 7.0E-06 CAGCAATTCCATTCTTA 17 SCRT1_C2H2_DBD_monomeric_15_1 SELEX + 35739397 35739411 5.0E-06 TCTCAACAGGTGAAT 15 Gata1_MA0035.2 JASPAR + 35738623 35738633 8.0E-06 TGAGATAAGAG 11 GATA3_GATA_full_monomeric_8_1 SELEX + 35738625 35738632 7.0E-06 AGATAAGA 8 POU6F2_POU_full_monomeric_10_1 SELEX + 35739763 35739772 8.0E-06 GCTCATTAAA 10 HOXB13_homeodomain_DBD_monomeric_11_1 SELEX + 35739763 35739773 1.0E-05 GCTCATTAAAA 11 ELF1_ETS_full_monomeric_12_1 SELEX - 35739565 35739576 4.0E-06 TCCCCGGAAGTG 12 Sox11_HMG_DBD_dimeric_15_1 SELEX + 35737833 35737847 3.0E-06 AGCAATTCCATTCTT 15 Sox3_HMG_DBD_dimeric_17_1 SELEX + 35737832 35737848 3.0E-06 CAGCAATTCCATTCTTA 17 Sox2_MA0143.1 JASPAR + 35737840 35737854 1.0E-05 CCATTCTTAGGCATA 15 V_TEL1_02_M02070 TRANSFAC - 35739565 35739574 5.0E-06 CCCGGAAGTG 10 V_AREB6_03_M00414 TRANSFAC - 35739369 35739380 6.0E-06 GCGCACCTGTTC 12 V_GATA2_02_M00348 TRANSFAC + 35738623 35738632 8.0E-06 TGAGATAAGA 10 V_AML3_Q6_M01856 TRANSFAC + 35739035 35739042 1.0E-05 AACCACAA 8 V_GABP_B_M00341 TRANSFAC - 35739563 35739574 5.0E-06 CCCGGAAGTGGG 12 V_MEF2_02_M00231 TRANSFAC + 35737800 35737821 0.0E+00 CAAAAGGTTAAAAATAGAACTA 22 V_IRF_Q6_01_M00972 TRANSFAC + 35740251 35740261 4.0E-06 GGAAGTGAAAC 11 V_PPAR_DR1_Q2_M00763 TRANSFAC + 35739740 35739752 6.0E-06 TGCCCTTTGTCCA 13 V_PU1_Q4_M01172 TRANSFAC - 35740245 35740263 4.0E-06 GAGTTTCACTTCCTGCTAT 19 V_HOXA13_03_M01430 TRANSFAC + 35739760 35739775 9.0E-06 TACGCTCATTAAAACT 16 V_HOXC13_01_M01317 TRANSFAC + 35739760 35739775 4.0E-06 TACGCTCATTAAAACT 16 V_MEF2A_Q6_M02024 TRANSFAC - 35737806 35737815 1.0E-06 TATTTTTAAC 10 V_CETS1P54_02_M00074 TRANSFAC - 35738989 35739001 9.0E-06 CCTCCGGAAATTC 13 V_PPARGRXRA_01_M02262 TRANSFAC - 35739740 35739754 8.0E-06 CGTGGACAAAGGGCA 15 V_WT1_Q6_01_M02036 TRANSFAC + 35738893 35738902 4.0E-06 CGCCCCCGCC 10 V_ELF2_02_M02054 TRANSFAC - 35739565 35739574 8.0E-06 CCCGGAAGTG 10 V_ETS_Q4_M00771 TRANSFAC - 35740249 35740260 2.0E-06 TTTCACTTCCTG 12 V_GC_01_M00255 TRANSFAC + 35739128 35739141 4.0E-06 AGGGGGCAGAGCTT 14 V_GC_01_M00255 TRANSFAC + 35739827 35739840 8.0E-06 AAGGGGAGGAGCGT 14 V_HNF4_01_B_M00411 TRANSFAC - 35739739 35739753 4.0E-06 GTGGACAAAGGGCAT 15 V_STAF_01_M00262 TRANSFAC + 35739772 35739793 3.0E-06 AACTTCCAGAATGCAACAGGAC 22 V_STAT1_01_M00224 TRANSFAC - 35738916 35738936 2.0E-06 TAGGAATTCCCGGAACGAGCC 21 V_AML2_01_M01759 TRANSFAC + 35739035 35739042 1.0E-05 AACCACAA 8 V_RSRFC4_Q2_M00407 TRANSFAC + 35737804 35737820 0.0E+00 AGGTTAAAAATAGAACT 17 V_IRF_Q6_M00772 TRANSFAC - 35740251 35740265 4.0E-06 GGGAGTTTCACTTCC 15 V_MEF2_03_M00232 TRANSFAC + 35737800 35737821 1.0E-06 CAAAAGGTTAAAAATAGAACTA 22 V_MATH1_Q2_M01716 TRANSFAC + 35740020 35740029 9.0E-06 GCACCTGGTG 10 V_SZF11_01_M01109 TRANSFAC - 35740147 35740161 7.0E-06 CCAGGGGATCGGAAG 15 V_ISRE_01_M00258 TRANSFAC - 35740249 35740263 1.0E-06 GAGTTTCACTTCCTG 15 V_IRF3_06_M02871 TRANSFAC - 35739710 35739723 0.0E+00 GGAGAAAGGTGCTT 14 V_MEF2_04_M00233 TRANSFAC + 35737800 35737821 5.0E-06 CAAAAGGTTAAAAATAGAACTA 22 V_DAX1_01_M01248 TRANSFAC + 35738631 35738650 1.0E-06 GAGGGGGAAGGTCAGTTTCT 20 V_TEL2_Q6_M00678 TRANSFAC - 35740249 35740258 4.0E-06 TCACTTCCTG 10 V_IRF4_03_M02768 TRANSFAC + 35738744 35738758 7.0E-06 GGTACCGAAACCAGC 15 V_GATA1_09_M02254 TRANSFAC + 35738623 35738633 8.0E-06 TGAGATAAGAG 11 V_MEF2_Q6_01_M00941 TRANSFAC - 35737807 35737818 2.0E-06 TTCTATTTTTAA 12 V_MAFK_Q3_M02022 TRANSFAC - 35738591 35738601 4.0E-06 TTACTCAGCTT 11 V_TEL1_01_M01993 TRANSFAC - 35739565 35739574 5.0E-06 CCCGGAAGTG 10 V_IK3_01_M00088 TRANSFAC + 35738922 35738934 8.0E-06 TTCCGGGAATTCC 13 V_SOX11_03_M02795 TRANSFAC + 35738724 35738740 5.0E-06 AGTAGAACAAAGCACGC 17 V_ELF4_01_M01979 TRANSFAC - 35739565 35739574 4.0E-06 CCCGGAAGTG 10 V_BLIMP1_Q6_M01066 TRANSFAC + 35740249 35740264 1.0E-06 CAGGAAGTGAAACTCC 16 V_ELK1_01_M00007 TRANSFAC + 35740245 35740260 4.0E-06 ATAGCAGGAAGTGAAA 16 V_GATA4_Q3_M00632 TRANSFAC - 35739721 35739732 1.0E-05 AGATATGGGGGA 12 V_BCL6B_04_M02844 TRANSFAC - 35740305 35740320 3.0E-06 ACTCCCTCCCCACAAA 16 V_ELF1_Q6_M00746 TRANSFAC + 35740245 35740256 9.0E-06 ATAGCAGGAAGT 12 V_IRF5_03_M02769 TRANSFAC + 35738743 35738757 5.0E-06 GGGTACCGAAACCAG 15 V_IPF1_05_M01255 TRANSFAC + 35739763 35739774 2.0E-06 GCTCATTAAAAC 12 V_AREB6_02_M00413 TRANSFAC - 35739400 35739411 4.0E-06 ATTCACCTGTTG 12 V_DR1_Q3_M00762 TRANSFAC - 35739740 35739752 9.0E-06 TGGACAAAGGGCA 13 V_SIRT6_01_M01797 TRANSFAC + 35738625 35738632 7.0E-06 AGATAAGA 8 V_GATA3_02_M00350 TRANSFAC + 35738623 35738632 5.0E-06 TGAGATAAGA 10 V_GATA3_01_M00077 TRANSFAC - 35739392 35739400 4.0E-06 GAGATAGGG 9 V_STAT_01_M00223 TRANSFAC - 35738922 35738930 7.0E-06 TTCCCGGAA 9 V_RSRFC4_01_M00026 TRANSFAC + 35737804 35737819 9.0E-06 AGGTTAAAAATAGAAC 16 V_RSRFC4_01_M00026 TRANSFAC - 35737804 35737819 0.0E+00 GTTCTATTTTTAACCT 16 V_ZABC1_01_M01306 TRANSFAC + 35739086 35739093 1.0E-05 ATTCCAAC 8 V_ZFP281_01_M01597 TRANSFAC + 35739055 35739065 1.0E-05 TGGGGGAGGTG 11 V_IRF1_Q6_01_M01881 TRANSFAC - 35740250 35740263 8.0E-06 GAGTTTCACTTCCT 14 V_DMRT2_01_M01147 TRANSFAC - 35740293 35740308 5.0E-06 CAAAGAGTTCCATTCT 16 V_SOX2_01_M02246 TRANSFAC + 35737840 35737854 1.0E-05 CCATTCTTAGGCATA 15 V_ZFP281_04_M02831 TRANSFAC - 35739053 35739067 6.0E-06 GCCACCTCCCCCACC 15 V_GATA2_03_M00349 TRANSFAC + 35738623 35738632 3.0E-06 TGAGATAAGA 10 V_ELF_02_M02053 TRANSFAC - 35739565 35739574 1.0E-05 CCCGGAAGTG 10 V_GMEB1_04_M02865 TRANSFAC + 35739746 35739761 1.0E-06 TTGTCCACGTCGTTTA 16 V_NR2F2_04_M02887 TRANSFAC + 35739699 35739714 3.0E-06 CGCGGCGGGTCAAGCA 16 PPARG_RXRA_MA0065.2 JASPAR - 35739740 35739754 8.0E-06 CGTGGACAAAGGGCA 15 V_ETV3_02_M02068 TRANSFAC + 35739815 35739824 9.0E-06 AACGGAAGTG 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.