Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PPHLN1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 51535 periphilin 1 chr12 + 42714946 - 42720446 42719946 Transcription Factor Binding Sites   Download all TFBS in the PPHLN1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 42720471 42720481 0.0E+00 AATGACTCATC 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 42720471 42720481 3.0E-06 GATGAGTCATT 11 GABPA_MA0062.2 JASPAR + 42719957 42719967 9.0E-06 CCGGAAGTACC 11 SPIC_ETS_full_monomeric_14_1 SELEX - 42721013 42721026 1.0E-06 TAAATGGGGAAGAA 14 SPIC_ETS_full_monomeric_14_1 SELEX - 42724117 42724130 3.0E-06 TAAAAGAGGAAGGC 14 STAT1_MA0137.2 JASPAR + 42720526 42720540 2.0E-06 CTCTTCCTGTAAATC 15 Pax4_MA0068.1 JASPAR + 42719504 42719533 3.0E-06 GAATTATTTAGAAAACTTCAGGAACTCAAC 30 SPIB_ETS_DBD_monomeric_14_1 SELEX - 42721013 42721026 9.0E-06 TAAATGGGGAAGAA 14 SPIB_ETS_DBD_monomeric_14_1 SELEX - 42724117 42724130 7.0E-06 TAAAAGAGGAAGGC 14 HOXA5_MA0158.1 JASPAR + 42720845 42720852 7.0E-06 CACTAATT 8 HIC2_C2H2_DBD_monomeric_9_1 SELEX + 42720582 42720590 1.0E-05 ATGCCCACC 9 NFAT5_NFAT_DBD_dimeric_14_1 SELEX + 42719428 42719441 0.0E+00 ATGGAAAAATACTG 14 TEAD3_TEA_DBD_dimeric_17_1 SELEX + 42720580 42720596 8.0E-06 ACATGCCCACCATTCCT 17 Stat3_MA0144.1 JASPAR - 42720528 42720537 9.0E-06 TTACAGGAAG 10 ELK1_ETS_full_monomeric_10_1 SELEX + 42719956 42719965 7.0E-06 GCCGGAAGTA 10 JDP2_bZIP_full_dimeric_9_1 SELEX + 42720472 42720480 2.0E-06 ATGACTCAT 9 JDP2_bZIP_full_dimeric_9_1 SELEX - 42720472 42720480 4.0E-06 ATGAGTCAT 9 GABPA_ETS_full_monomeric_10_1 SELEX + 42719956 42719965 5.0E-06 GCCGGAAGTA 10 RORA_nuclearreceptor_DBD_dimeric_20_1 SELEX + 42720438 42720457 4.0E-06 ACGAGGTCAACTTGGGGAGA 20 Elk3_ETS_DBD_monomeric_10_1 SELEX + 42719956 42719965 6.0E-06 GCCGGAAGTA 10 CPEB1_RRM_full_monomeric_8_1 SELEX + 42719626 42719633 4.0E-06 AATAAAAA 8 GBX2_homeodomain_DBD_dimeric_14_1 SELEX + 42719496 42719509 9.0E-06 TTATGGGGGAATTA 14 SPI1_ETS_full_monomeric_14_1 SELEX - 42721013 42721026 7.0E-06 TAAATGGGGAAGAA 14 SPI1_ETS_full_monomeric_14_1 SELEX - 42724117 42724130 6.0E-06 TAAAAGAGGAAGGC 14 RUNX1_MA0002.2 JASPAR + 42720932 42720942 5.0E-06 TTCTGTGGTCT 11 E2F2_E2F_DBD_dimeric_18_1 SELEX - 42720510 42720527 3.0E-06 AGAAAAGGTGCCAAGAAG 18 RREB1_MA0073.1 JASPAR - 42719484 42719503 7.0E-06 CCCCATAACACCAAACATGA 20 ZNF784_C2H2_full_monomeric_10_1 SELEX + 42719963 42719972 1.0E-06 GTACCTACCT 10 V_NFAT_Q4_01_M00935 TRANSFAC + 42719428 42719437 7.0E-06 ATGGAAAAAT 10 V_SPI1_01_M01203 TRANSFAC - 42721010 42721026 7.0E-06 TAAATGGGGAAGAAACG 17 V_TCF3_01_M01594 TRANSFAC + 42720137 42720149 9.0E-06 CCTTTGAATTGTG 13 V_E2F4_Q6_M02090 TRANSFAC + 42719639 42719648 1.0E-05 GCGGGAGAGA 10 V_MAFK_03_M02776 TRANSFAC + 42719431 42719445 3.0E-06 GAAAAATACTGACTC 15 V_SOX11_04_M02899 TRANSFAC + 42719503 42719516 9.0E-06 GGAATTATTTAGAA 14 V_LHX3_01_M01471 TRANSFAC + 42719503 42719519 7.0E-06 GGAATTATTTAGAAAAC 17 V_AP4_Q6_02_M01860 TRANSFAC - 42719701 42719713 2.0E-06 TCAGCTGCGGCCT 13 V_PU1_Q4_M01172 TRANSFAC + 42721007 42721025 6.0E-06 CTTCGTTTCTTCCCCATTT 19 V_NFAT2_01_M01748 TRANSFAC + 42719428 42719436 3.0E-06 ATGGAAAAA 9 V_PEA3_01_M01991 TRANSFAC + 42719956 42719965 8.0E-06 GCCGGAAGTA 10 V_REX1_01_M01695 TRANSFAC - 42720543 42720552 1.0E-06 GTAGCCATTA 10 V_AP1_Q6_M00174 TRANSFAC + 42720471 42720481 5.0E-06 AATGACTCATC 11 V_BACH1_01_M00495 TRANSFAC - 42720469 42720483 0.0E+00 AAGATGAGTCATTCT 15 V_HELIOSA_02_M01004 TRANSFAC + 42719426 42719436 2.0E-06 AAATGGAAAAA 11 V_LMX1_01_M01409 TRANSFAC + 42719503 42719519 3.0E-06 GGAATTATTTAGAAAAC 17 V_OCT1_02_M00136 TRANSFAC + 42720250 42720264 2.0E-06 CTTAATATGCAAGAA 15 V_RUNX1_01_M02257 TRANSFAC + 42720932 42720942 5.0E-06 TTCTGTGGTCT 11 V_NFAT_Q6_M00302 TRANSFAC + 42719426 42719437 1.0E-06 AAATGGAAAAAT 12 V_E2F1_01_M01250 TRANSFAC + 42721010 42721017 1.0E-05 CGTTTCTT 8 V_KROX_Q6_M00982 TRANSFAC - 42720092 42720105 1.0E-06 CCCGCCCACTCCCC 14 V_AP1_Q6_01_M00925 TRANSFAC + 42720472 42720480 4.0E-06 ATGACTCAT 9 V_ER81_02_M02065 TRANSFAC + 42719956 42719965 8.0E-06 GCCGGAAGTA 10 V_RFX4_04_M02893 TRANSFAC + 42720904 42720918 9.0E-06 ATCCTTGGTTACCGC 15 V_OCT1_05_M00161 TRANSFAC + 42720956 42720969 3.0E-06 CTCATTTCCATGCT 14 V_ISRE_01_M00258 TRANSFAC + 42719552 42719566 3.0E-06 AAGTTTCTCATTTGA 15 V_GADP_01_M01258 TRANSFAC - 42719954 42719965 3.0E-06 TACTTCCGGCGC 12 V_JUNDM2_04_M02876 TRANSFAC + 42720468 42720483 2.0E-06 CAGAATGACTCATCTT 16 V_JUNDM2_04_M02876 TRANSFAC - 42720469 42720484 4.0E-06 AAAGATGAGTCATTCT 16 V_NFE4_Q5_M02105 TRANSFAC - 42719675 42719686 7.0E-06 CCCCCTCCCCAG 12 V_GRE_C_M00205 TRANSFAC + 42719822 42719837 8.0E-06 GGCATCACGAGTCCTG 16 V_AP1_C_M00199 TRANSFAC - 42720472 42720480 8.0E-06 ATGAGTCAT 9 V_HOXA5_03_M02271 TRANSFAC + 42720845 42720852 7.0E-06 CACTAATT 8 V_ELK1_02_M00025 TRANSFAC + 42719953 42719966 3.0E-06 CGCGCCGGAAGTAC 14 V_AP1_01_M00517 TRANSFAC + 42720470 42720482 3.0E-06 GAATGACTCATCT 13 V_PEA3_02_M02066 TRANSFAC + 42719956 42719965 8.0E-06 GCCGGAAGTA 10 V_STAT3_03_M01595 TRANSFAC - 42720524 42720539 3.0E-06 ATTTACAGGAAGAGAA 16 V_OCT4_02_M01124 TRANSFAC + 42719369 42719383 7.0E-06 TTTCTGATTTAAAAA 15 V_AP1_Q2_01_M00924 TRANSFAC + 42720473 42720484 9.0E-06 TGACTCATCTTT 12 V_LIM1_01_M01418 TRANSFAC + 42719503 42719519 5.0E-06 GGAATTATTTAGAAAAC 17 V_ELK1_01_M00007 TRANSFAC + 42719953 42719968 6.0E-06 CGCGCCGGAAGTACCT 16 V_NET_01_M01982 TRANSFAC + 42719956 42719965 7.0E-06 GCCGGAAGTA 10 V_AP1_Q4_01_M00926 TRANSFAC - 42720472 42720479 1.0E-05 TGAGTCAT 8 V_CREBP1CJUN_01_M00041 TRANSFAC - 42719940 42719947 1.0E-05 TGACGTTA 8 V_SMAD4_04_M02898 TRANSFAC - 42719632 42719648 2.0E-06 TCTCTCCCGCCACCCTT 17 V_E2F6_01_M01252 TRANSFAC + 42721010 42721017 1.0E-05 CGTTTCTT 8 V_GATA3_01_M00077 TRANSFAC + 42720222 42720230 7.0E-06 AAGATAGGG 9 V_LMX1B_01_M01363 TRANSFAC - 42719503 42719519 5.0E-06 GTTTTCTAAATAATTCC 17 V_FRA1_Q5_M01267 TRANSFAC - 42720472 42720479 1.0E-05 TGAGTCAT 8 V_NRF2_Q4_M00821 TRANSFAC - 42720471 42720483 4.0E-06 AAGATGAGTCATT 13 V_TCF4_Q5_M00671 TRANSFAC + 42720137 42720144 1.0E-05 CCTTTGAA 8 V_MTATA_B_M00320 TRANSFAC - 42724037 42724053 3.0E-06 CGGTATAAAACCCGATT 17 V_STAT1STAT1_Q3_M01212 TRANSFAC - 42720527 42720539 2.0E-06 ATTTACAGGAAGA 13 V_SAP1A_03_M02058 TRANSFAC + 42719956 42719965 9.0E-06 GCCGGAAGTA 10 V_PBX_Q3_M00998 TRANSFAC - 42720727 42720738 4.0E-06 GATTGATTGTGC 12 V_PBX_Q3_M00998 TRANSFAC - 42720773 42720784 4.0E-06 GATGGATTGTAC 12 V_RFX3_05_M02892 TRANSFAC + 42720900 42720922 1.0E-06 TGTTATCCTTGGTTACCGCCCAA 23 V_NFE2_01_M00037 TRANSFAC - 42720472 42720482 8.0E-06 AGATGAGTCAT 11 V_LHX5_01_M01353 TRANSFAC + 42719503 42719519 1.0E-05 GGAATTATTTAGAAAAC 17 V_SOX5_07_M02909 TRANSFAC - 42720146 42720162 9.0E-06 GGCAGAATTGTCACACA 17 V_ZFP128_04_M02932 TRANSFAC + 42720533 42720546 2.0E-06 TGTAAATCTATAAT 14 V_DEC_Q1_M00997 TRANSFAC - 42719725 42719737 6.0E-06 ACCCACCTGAAGG 13 V_STAT1_05_M01260 TRANSFAC - 42720519 42720540 0.0E+00 GATTTACAGGAAGAGAAAAGGT 22 V_PAX4_04_M00380 TRANSFAC - 42720602 42720631 1.0E-05 ATAAATTACCTTGCATTACGTTCTGATTTT 30 V_OCT4_01_M01125 TRANSFAC + 42719368 42719382 9.0E-06 ATTTCTGATTTAAAA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.