Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PDE1B Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 5153 phosphodiesterase 1B, calmodulin-dependent chr12 + 54938176 - 54943676 54943176 Transcription Factor Binding Sites   Download all TFBS in the PDE1B promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NKX2-8_homeodomain_full_monomeric_9_1 SELEX + 54940537 54940545 3.0E-06 CCACTTGAA 9 TBX21_TBX_full_dimeric_16_1 SELEX - 54944189 54944204 5.0E-06 TGTGTGCAATCACTCC 16 Foxa2_MA0047.2 JASPAR - 54943129 54943140 5.0E-06 TGTTTACAGAGT 12 TBX1_TBX_DBD_dimeric_20_2 SELEX + 54944103 54944122 6.0E-06 CTCACACATATCCATGTGCA 20 SOX10_HMG_full_dimeric_16_1 SELEX + 54944112 54944127 5.0E-06 ATCCATGTGCAGAGTT 16 SOX9_HMG_full_dimeric_16_1 SELEX + 54944112 54944127 6.0E-06 ATCCATGTGCAGAGTT 16 FOXO3_MA0157.1 JASPAR + 54943133 54943140 7.0E-06 TGTAAACA 8 Tp53_p53l_DBD_dimeric_18_2 SELEX - 54944147 54944164 9.0E-06 CTCATGCACACACATGTC 18 MEF2A_MA0052.1 JASPAR - 54940683 54940692 4.0E-06 CTATTTAAAG 10 SOX2_HMG_full_dimeric_15_1 SELEX + 54940685 54940699 5.0E-06 TTAAATAGCATTCCC 15 TFCP2_CP2_full_dimer-of-dimers_16_1 SELEX + 54945216 54945231 3.0E-06 ACCAGATTGAACTGAT 16 Gata1_MA0035.2 JASPAR + 54945308 54945318 2.0E-06 GCAGATAAGGA 11 ZSCAN4_C2H2_full_monomeric_15_1 SELEX - 54943222 54943236 7.0E-06 GGCACACACAGACAG 15 NKX2-3_homeodomain_full_monomeric_10_1 SELEX + 54940536 54940545 8.0E-06 CCCACTTGAA 10 Myf_MA0055.1 JASPAR + 54943409 54943420 8.0E-06 CGGCAGCAGCAG 12 Meis2_MEIS_DBD_dimeric_12_1 SELEX + 54944146 54944157 8.0E-06 TGACATGTGTGT 12 PLAG1_MA0163.1 JASPAR - 54940432 54940445 8.0E-06 GAGGCCCTGTGGGG 14 PLAG1_MA0163.1 JASPAR - 54940490 54940503 2.0E-06 GGGGCTGAAGGGGG 14 ELF5_MA0136.1 JASPAR - 54945314 54945322 4.0E-06 TACTTCCTT 9 RREB1_MA0073.1 JASPAR + 54943081 54943100 0.0E+00 AACCCACACAACCACCCACA 20 RREB1_MA0073.1 JASPAR + 54943082 54943101 9.0E-06 ACCCACACAACCACCCACAC 20 RREB1_MA0073.1 JASPAR + 54943085 54943104 5.0E-06 CACACAACCACCCACACCGA 20 V_GATA1_Q6_M02004 TRANSFAC + 54945305 54945319 1.0E-06 GGGGCAGATAAGGAA 15 V_FOXO3_02_M02270 TRANSFAC + 54943133 54943140 7.0E-06 TGTAAACA 8 V_AML3_Q6_M01856 TRANSFAC + 54943040 54943047 1.0E-05 AACCACAA 8 V_IK_Q5_M01169 TRANSFAC + 54943256 54943265 1.0E-06 TTTGGGAGGG 10 V_MEF2_02_M00231 TRANSFAC + 54940676 54940697 9.0E-06 GCTGCCCCTTTAAATAGCATTC 22 V_NKX25_Q6_M02108 TRANSFAC + 54940536 54940546 5.0E-06 CCCACTTGAAT 11 V_HTF_01_M00538 TRANSFAC - 54945263 54945286 8.0E-06 CATTAACGCAGCGTCATTTTCTAT 24 V_AP4_Q6_02_M01860 TRANSFAC - 54944197 54944209 6.0E-06 ACAGCTGTGTGCA 13 V_PU1_Q4_M01172 TRANSFAC - 54945310 54945328 4.0E-06 TTCAACTACTTCCTTATCT 19 V_LYF1_01_M00141 TRANSFAC + 54943256 54943264 9.0E-06 TTTGGGAGG 9 V_ZFP691_03_M02833 TRANSFAC - 54945239 54945255 6.0E-06 CACACAGTGCTCCTCCC 17 V_BRN2_01_M00145 TRANSFAC + 54945281 54945296 7.0E-06 TTAATGGTAAATGAGC 16 V_TCFAP2C_04_M02925 TRANSFAC - 54943206 54943219 6.0E-06 GCGCCCAAGGGCGA 14 V_PPARGRXRA_01_M02262 TRANSFAC + 54945296 54945310 1.0E-05 CTGGGGAAAGGGGCA 15 V_COMP1_01_M00057 TRANSFAC - 54945137 54945160 3.0E-06 AAATTGGATTGGCCAGAGGCAGCC 24 V_HELIOSA_02_M01004 TRANSFAC + 54945207 54945217 6.0E-06 AAATGGAAAAC 11 V_MYF_01_M01302 TRANSFAC + 54943409 54943420 8.0E-06 CGGCAGCAGCAG 12 V_FREAC3_01_M00291 TRANSFAC + 54943129 54943144 6.0E-06 ACTCTGTAAACACGCA 16 V_PR_01_M00954 TRANSFAC + 54940399 54940425 2.0E-06 CGGTTGGGGGAAGAGTGTTCTTCCAGT 27 V_AML2_01_M01759 TRANSFAC + 54943040 54943047 1.0E-05 AACCACAA 8 V_CEBPD_Q6_M00621 TRANSFAC - 54945200 54945211 5.0E-06 CATTTCTTCATC 12 V_IK1_01_M00086 TRANSFAC + 54944219 54944231 7.0E-06 GCATGGGAATACT 13 V_NKX25_Q5_M01043 TRANSFAC + 54940535 54940544 3.0E-06 TCCCACTTGA 10 V_MEF2_03_M00232 TRANSFAC + 54940676 54940697 5.0E-06 GCTGCCCCTTTAAATAGCATTC 22 V_HIC1_05_M02763 TRANSFAC + 54944230 54944245 3.0E-06 CTTGTGCCAACCTGTG 16 V_ELF5_01_M01197 TRANSFAC + 54945312 54945322 0.0E+00 ATAAGGAAGTA 11 V_GRE_C_M00205 TRANSFAC - 54944045 54944060 6.0E-06 TGCATATACTGTGCTG 16 V_SPIB_01_M01204 TRANSFAC + 54945309 54945325 7.0E-06 CAGATAAGGAAGTAGTT 17 V_GATA1_09_M02254 TRANSFAC + 54945308 54945318 2.0E-06 GCAGATAAGGA 11 V_RREB1_01_M00257 TRANSFAC + 54943082 54943095 2.0E-06 ACCCACACAACCAC 14 V_RREB1_01_M00257 TRANSFAC + 54943086 54943099 9.0E-06 ACACAACCACCCAC 14 V_MEF2_Q6_01_M00941 TRANSFAC - 54940683 54940694 5.0E-06 TGCTATTTAAAG 12 V_TCF1_07_M02919 TRANSFAC + 54943745 54943758 9.0E-06 AGATGTGGATTAAG 14 V_AP1_01_M00517 TRANSFAC - 54944097 54944109 3.0E-06 GTGTGAGTCAGCC 13 V_GLI3_Q5_01_M01657 TRANSFAC - 54943091 54943099 6.0E-06 GTGGGTGGT 9 V_TFIII_Q6_M00706 TRANSFAC + 54943327 54943335 6.0E-06 AGAGGGAGG 9 V_TAL1_01_M01591 TRANSFAC - 54945308 54945320 0.0E+00 CTTCCTTATCTGC 13 V_GATA1_04_M00128 TRANSFAC + 54945307 54945319 9.0E-06 GGCAGATAAGGAA 13 V_FPM315_01_M01587 TRANSFAC - 54940425 54940436 6.0E-06 TGGGGAGGAGGA 12 V_FPM315_01_M01587 TRANSFAC + 54943263 54943274 5.0E-06 GGGGGAGGAGTG 12 V_FPM315_01_M01587 TRANSFAC + 54943349 54943360 0.0E+00 GGGGGAGGAGGA 12 V_FOXA2_03_M02260 TRANSFAC - 54943129 54943140 5.0E-06 TGTTTACAGAGT 12 V_LMO2COM_02_M00278 TRANSFAC + 54945309 54945317 3.0E-06 CAGATAAGG 9 V_MEF2A_05_M01301 TRANSFAC - 54940683 54940694 4.0E-06 TGCTATTTAAAG 12 V_ELF5_04_M02241 TRANSFAC - 54945314 54945322 4.0E-06 TACTTCCTT 9 V_TCF11MAFG_01_M00284 TRANSFAC + 54945265 54945286 1.0E-06 AGAAAATGACGCTGCGTTAATG 22 V_RFX1_02_M00281 TRANSFAC + 54943979 54943996 1.0E-06 GAGTTGCAAAGGTAACGA 18 PPARG_RXRA_MA0065.2 JASPAR + 54945296 54945310 1.0E-05 CTGGGGAAAGGGGCA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.