Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

DDX41 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 51428 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 chr5 - 176943467 - 176948967 176943967 Transcription Factor Binding Sites   Download all TFBS in the DDX41 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints EWSR1-FLI1_MA0149.1 JASPAR - 176943911 176943928 9.0E-06 GAACGGAAGGTAGGAGAG 18 EBF1_MA0154.1 JASPAR + 176948163 176948172 5.0E-06 ACCCCAGGGA 10 MYBL2_MYB_DBD_monomeric_11_1 SELEX - 176944548 176944558 3.0E-06 ATAACCGTTTA 11 NFATC1_NFAT_full_dimeric_20_1 SELEX - 176944068 176944087 9.0E-06 TCCGGAACAAATTTGTCCCT 20 MYBL1_MYB_DBD_dimeric_17_1 SELEX - 176944549 176944565 2.0E-06 TACAGTAATAACCGTTT 17 ZNF143_C2H2_DBD_monomeric_16_1 SELEX - 176944168 176944183 0.0E+00 GTCCCACAATGCCTTG 16 MYBL1_MYB_DBD_monomeric_11_1 SELEX - 176944548 176944558 2.0E-06 ATAACCGTTTA 11 NRF1_NRF_full_dimeric_12_1 SELEX + 176943956 176943967 3.0E-06 CACGCATGCGCG 12 NRF1_NRF_full_dimeric_12_1 SELEX - 176943956 176943967 3.0E-06 CGCGCATGCGTG 12 Zfx_MA0146.1 JASPAR - 176943652 176943665 8.0E-06 GTGGCCTCGGCCTC 14 V_CEBPG_Q6_M00622 TRANSFAC - 176944519 176944531 8.0E-06 CCCACTTCAAAAC 13 V_AHR_Q5_M00778 TRANSFAC + 176943991 176944001 0.0E+00 CTTGCGTGAGA 11 V_NKX25_Q6_M02108 TRANSFAC - 176944521 176944531 8.0E-06 CCCACTTCAAA 11 V_AP2_Q6_01_M00915 TRANSFAC - 176944582 176944594 1.0E-05 CGCCCCCCAGGCA 13 V_MYB_05_M02779 TRANSFAC + 176944545 176944561 0.0E+00 ATGTAAACGGTTATTAC 17 V_MYB_05_M02779 TRANSFAC - 176944545 176944561 7.0E-06 GTAATAACCGTTTACAT 17 V_TST1_01_M00133 TRANSFAC - 176944558 176944572 8.0E-06 GAGCATTTACAGTAA 15 V_GC_01_M00255 TRANSFAC - 176943976 176943989 8.0E-06 ATGAGGCGGGGTTT 14 V_STAF_01_M00262 TRANSFAC - 176944164 176944185 0.0E+00 ATGTCCCACAATGCCTTGCAGC 22 V_MYBL1_03_M02780 TRANSFAC + 176944545 176944561 1.0E-06 ATGTAAACGGTTATTAC 17 V_MYBL1_03_M02780 TRANSFAC - 176944545 176944561 4.0E-06 GTAATAACCGTTTACAT 17 V_MAZ_Q6_01_M02023 TRANSFAC - 176943696 176943709 9.0E-06 CGGGGAGGGATGGG 14 V_NKX25_Q5_M01043 TRANSFAC - 176944523 176944532 6.0E-06 TCCCACTTCA 10 V_ISRE_01_M00258 TRANSFAC - 176948186 176948200 2.0E-06 CAGTTTCATATCTCA 15 V_AHR_01_M00139 TRANSFAC + 176943984 176944001 6.0E-06 CCTCATCCTTGCGTGAGA 18 V_SP1SP3_Q4_M01219 TRANSFAC + 176943668 176943678 8.0E-06 CCGCCCCCTGC 11 V_DAX1_01_M01248 TRANSFAC + 176943489 176943508 5.0E-06 AGTCCACAAGGTCAGCGTCA 20 V_PAX8_01_M00717 TRANSFAC + 176943987 176944001 7.0E-06 CATCCTTGCGTGAGA 15 V_EBF1_01_M02267 TRANSFAC + 176948163 176948172 5.0E-06 ACCCCAGGGA 10 V_STAF_02_M00264 TRANSFAC - 176944165 176944185 0.0E+00 ATGTCCCACAATGCCTTGCAG 21 V_SP1_01_M00008 TRANSFAC - 176943978 176943987 7.0E-06 GAGGCGGGGT 10 V_MZF1_02_M00084 TRANSFAC - 176943715 176943727 9.0E-06 TGGTGAGGGGCAC 13 V_PAX8_B_M00328 TRANSFAC + 176943986 176944003 2.0E-06 TCATCCTTGCGTGAGACC 18 V_ELF1_Q6_M00746 TRANSFAC + 176944231 176944242 3.0E-06 GGAAGAGGAAGA 12 V_MYOD_Q6_02_M02100 TRANSFAC - 176944255 176944263 8.0E-06 CAGCTGTCT 9 V_PLAG1_01_M01778 TRANSFAC + 176948061 176948076 7.0E-06 GGGGCCATCATGGGGG 16 V_ZFP206_01_M01742 TRANSFAC - 176943957 176943967 8.0E-06 CGCGCATGCGT 11 V_NRF1_Q6_M00652 TRANSFAC + 176943958 176943967 4.0E-06 CGCATGCGCG 10 V_EWSR1FLI1_01_M02252 TRANSFAC - 176943911 176943928 9.0E-06 GAACGGAAGGTAGGAGAG 18 V_ZFP128_04_M02932 TRANSFAC + 176944538 176944551 6.0E-06 TGTATAAATGTAAA 14 V_ZFP128_04_M02932 TRANSFAC - 176944538 176944551 7.0E-06 TTTACATTTATACA 14 V_SEF1_C_M00214 TRANSFAC + 176944503 176944521 1.0E-06 GATACGGATGGCAGTGGTT 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.