Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SPTBN5 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 51332 spectrin, beta, non-erythrocytic 5 chr15 - 42185775 - 42191275 42186275 Transcription Factor Binding Sites   Download all TFBS in the SPTBN5 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NKX2-8_homeodomain_full_monomeric_9_1 SELEX + 42187124 42187132 8.0E-06 ACACTTGAA 9 NEUROD2_bHLH_full_dimeric_10_1 SELEX + 42189972 42189981 1.0E-05 ACCATATGCT 10 NFIA_NFI_full_dimeric_15_1 SELEX + 42187507 42187521 3.0E-06 TTGGAAGCCTGCCAG 15 IRF7_IRF_DBD_dimeric_14_1 SELEX - 42189922 42189935 8.0E-06 GGGAAAATGAAAAC 14 EWSR1-FLI1_MA0149.1 JASPAR - 42184306 42184323 4.0E-06 GGAGGAAAGCCAGGGAGG 18 NFIX_NFI_full_dimeric_15_2 SELEX - 42187507 42187521 4.0E-06 CTGGCAGGCTTCCAA 15 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX + 42187609 42187620 6.0E-06 TGCCCCAAGGCT 12 IRF1_MA0050.1 JASPAR - 42189922 42189933 2.0E-06 GAAAATGAAAAC 12 BHLHE23_bHLH_DBD_dimeric_10_1 SELEX + 42189972 42189981 2.0E-06 ACCATATGCT 10 BHLHE23_bHLH_DBD_dimeric_10_1 SELEX - 42189972 42189981 9.0E-06 AGCATATGGT 10 BHLHE22_bHLH_DBD_dimeric_12_1 SELEX + 42189971 42189982 6.0E-06 TACCATATGCTG 12 BHLHE22_bHLH_DBD_dimeric_12_1 SELEX - 42189971 42189982 5.0E-06 CAGCATATGGTA 12 OLIG1_bHLH_DBD_dimeric_10_1 SELEX + 42189972 42189981 4.0E-06 ACCATATGCT 10 OLIG1_bHLH_DBD_dimeric_10_1 SELEX - 42189972 42189981 5.0E-06 AGCATATGGT 10 SP4_C2H2_full_monomeric_17_1 SELEX - 42184923 42184939 2.0E-06 GAAGCCACGCCCTCCTC 17 PAX9_PAX_DBD_monomeric_17_1 SELEX - 42187151 42187167 1.0E-05 CGTCACCCCTGACTGCC 17 Klf12_C2H2_DBD_monomeric_15_1 SELEX - 42184923 42184937 4.0E-06 AGCCACGCCCTCCTC 15 Atoh1_bHLH_DBD_dimeric_10_1 SELEX + 42189972 42189981 1.0E-05 ACCATATGCT 10 FEV_MA0156.1 JASPAR - 42187582 42187589 1.0E-05 CAGGAAAT 8 NFIB_NFI_full_dimeric_15_1 SELEX + 42187507 42187521 3.0E-06 TTGGAAGCCTGCCAG 15 ZNF282_C2H2_DBD_monomeric_17_1 SELEX + 42184315 42184331 4.0E-06 CTTTCCTCCAACACACC 17 JDP2_bZIP_full_dimeric_9_1 SELEX + 42187117 42187125 1.0E-05 ATGAGTCAC 9 Myf_MA0055.1 JASPAR - 42187303 42187314 0.0E+00 CAGCAACTGCTG 12 FOXC1_MA0032.1 JASPAR + 42183423 42183430 7.0E-06 AGTAAGTA 8 IRF3_IRF_full_trimeric_21_1 SELEX - 42189921 42189941 3.0E-06 TTTAAAGGGAAAATGAAAACT 21 ETV6_ETS_full_dimeric_15_1 SELEX + 42189761 42189775 3.0E-06 CAGGAGGCGGAAGCA 15 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX + 42187609 42187620 5.0E-06 TGCCCCAAGGCT 12 BHLHA15_bHLH_DBD_dimeric_10_1 SELEX + 42189972 42189981 4.0E-06 ACCATATGCT 10 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX + 42187609 42187620 2.0E-06 TGCCCCAAGGCT 12 OLIG2_bHLH_full_dimeric_10_1 SELEX + 42189972 42189981 3.0E-06 ACCATATGCT 10 OLIG2_bHLH_full_dimeric_10_1 SELEX - 42189972 42189981 9.0E-06 AGCATATGGT 10 RREB1_MA0073.1 JASPAR - 42186980 42186999 1.0E-06 CACCCACACACACACACCCC 20 OLIG3_bHLH_DBD_dimeric_10_1 SELEX + 42189972 42189981 3.0E-06 ACCATATGCT 10 SOX9_HMG_full_dimeric_17_1 SELEX - 42184788 42184804 1.0E-05 AAAGAATCTTAGCGTTC 17 V_NFKB_Q6_01_M00774 TRANSFAC + 42189812 42189827 8.0E-06 GCTGGGGAGATTCCCA 16 V_BTEB3_Q5_M01865 TRANSFAC - 42184960 42184972 7.0E-06 GTACAGGAGGAGT 13 V_ETS_B_M00340 TRANSFAC - 42187216 42187229 9.0E-06 GAGAGGAAGCGTCT 14 V_IRF_Q6_01_M00972 TRANSFAC - 42189923 42189933 2.0E-06 GAAAATGAAAA 11 V_IRF2_Q6_M01882 TRANSFAC - 42189920 42189935 3.0E-06 GGGAAAATGAAAACTC 16 V_NFAT3_Q3_M01734 TRANSFAC + 42184845 42184854 1.0E-05 ACATTTTCCA 10 V_AP2_Q6_01_M00915 TRANSFAC - 42185257 42185269 6.0E-06 CCCTCCCCAGGCG 13 V_GABPA_04_M02858 TRANSFAC - 42189762 42189777 5.0E-06 CCTGCTTCCGCCTCCT 16 V_GKLF_02_M01588 TRANSFAC - 42184925 42184936 4.0E-06 GCCACGCCCTCC 12 V_NFAT2_01_M01748 TRANSFAC - 42184847 42184855 8.0E-06 GTGGAAAAT 9 V_HELIOSA_01_M01003 TRANSFAC - 42189929 42189939 9.0E-06 TAAAGGGAAAA 11 V_ETS_Q4_M00771 TRANSFAC + 42187578 42187589 1.0E-05 CACCATTTCCTG 12 V_BACH1_01_M00495 TRANSFAC + 42187114 42187128 3.0E-06 GGGATGAGTCACACT 15 V_MYF_01_M01302 TRANSFAC - 42187303 42187314 0.0E+00 CAGCAACTGCTG 12 V_NFKB_Q6_M00194 TRANSFAC - 42189815 42189828 3.0E-06 TTGGGAATCTCCCC 14 V_IK1_01_M00086 TRANSFAC - 42189818 42189830 7.0E-06 ACTTGGGAATCTC 13 V_IRF3_Q3_M01279 TRANSFAC + 42189926 42189938 0.0E+00 TCATTTTCCCTTT 13 V_OCT1_05_M00161 TRANSFAC + 42183455 42183468 6.0E-06 AGACTTTCCATAAG 14 V_IRF_Q6_M00772 TRANSFAC + 42189919 42189933 7.0E-06 GGAGTTTTCATTTTC 15 V_IRF_Q6_M00772 TRANSFAC + 42189925 42189939 9.0E-06 TTCATTTTCCCTTTA 15 V_JUNDM2_04_M02876 TRANSFAC + 42187113 42187128 1.0E-06 AGGGATGAGTCACACT 16 V_JUNDM2_04_M02876 TRANSFAC - 42187114 42187129 7.0E-06 AAGTGTGACTCATCCC 16 V_REST_01_M01256 TRANSFAC + 42187554 42187575 2.0E-06 TCTGGGTGCTCTCCATGGGCCA 22 V_ZIC3_05_M02941 TRANSFAC + 42183402 42183416 2.0E-06 GCACACAGCAGGCAA 15 V_RREB1_01_M00257 TRANSFAC - 42186985 42186998 6.0E-06 ACCCACACACACAC 14 V_SP3_Q3_M00665 TRANSFAC - 42187607 42187620 4.0E-06 AGCCTTGGGGCAGG 14 V_BLIMP1_Q6_M01066 TRANSFAC - 42187650 42187665 3.0E-06 GAGAATGGGAAAGGAC 16 V_FOXO1_Q5_M01216 TRANSFAC - 42183373 42183381 5.0E-06 GAAAACAAA 9 V_IRF7_01_M00453 TRANSFAC - 42189919 42189936 7.0E-06 AGGGAAAATGAAAACTCC 18 V_NEUROD_02_M01288 TRANSFAC + 42187227 42187238 2.0E-06 CTCCTGCTGTCC 12 V_ZIC2_05_M02940 TRANSFAC + 42183402 42183416 2.0E-06 GCACACAGCAGGCAA 15 V_TTF1_Q5_M02034 TRANSFAC + 42187093 42187106 9.0E-06 GCGCCCTTGAGAGC 14 V_MAZR_01_M00491 TRANSFAC + 42185261 42185273 4.0E-06 TGGGGAGGGGACA 13 V_NRSF_01_M00256 TRANSFAC - 42186088 42186108 8.0E-06 GGCATCACCAAGGTAAGCAGC 21 V_ASCL2_04_M02841 TRANSFAC + 42184300 42184315 9.0E-06 TTCTCCCCTCCCTGGC 16 V_P53_04_M01652 TRANSFAC + 42187477 42187496 2.0E-06 AGACTTGCCAGACCTTGCCT 20 V_P53_04_M01652 TRANSFAC - 42187477 42187496 3.0E-06 AGGCAAGGTCTGGCAAGTCT 20 V_IRF1_Q6_01_M01881 TRANSFAC + 42189921 42189934 2.0E-06 AGTTTTCATTTTCC 14 V_EWSR1FLI1_01_M02252 TRANSFAC - 42184306 42184323 4.0E-06 GGAGGAAAGCCAGGGAGG 18 V_P300_01_M00033 TRANSFAC + 42183445 42183458 1.0E-06 AAAAGGAGTGAGAC 14 V_FEV_01_M02269 TRANSFAC - 42187582 42187589 1.0E-05 CAGGAAAT 8 V_ZIC1_05_M02939 TRANSFAC + 42183402 42183416 1.0E-06 GCACACAGCAGGCAA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.