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PCDH12 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 51294 protocadherin 12 chr5 - 141338127 - 141343627 141338627 Transcription Factor Binding Sites   Download all TFBS in the PCDH12 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 141340696 141340713 3.0E-06 TGTGTTAACATTTATATT 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 141340696 141340713 0.0E+00 AATATAAATGTTAACACA 18 CTCF_MA0139.1 JASPAR - 141339725 141339743 0.0E+00 CTGCCAGCAGGGGGCAATG 19 CTCF_MA0139.1 JASPAR - 141340460 141340478 0.0E+00 TGGCCACCAGATGGCGCTC 19 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 141340551 141340563 2.0E-06 ATAAATATCCACA 13 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 141340698 141340710 7.0E-06 ATAAATGTTAACA 13 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 141340699 141340711 9.0E-06 GTTAACATTTATA 13 SOX10_HMG_full_dimeric_16_1 SELEX + 141343564 141343579 9.0E-06 AACTCTTTTCACTGTT 16 SPIC_ETS_full_monomeric_14_1 SELEX + 141340523 141340536 3.0E-06 GAAAACAGGAAGTG 14 ELF4_ETS_full_monomeric_12_1 SELEX + 141340525 141340536 5.0E-06 AAACAGGAAGTG 12 Tp53_p53l_DBD_dimeric_18_2 SELEX - 141340215 141340232 1.0E-05 GACAAGGCCTGGCATGTG 18 NFKB1_MA0105.1 JASPAR + 141338693 141338703 5.0E-06 GGGGAACCCCC 11 NFKB1_MA0105.1 JASPAR - 141338693 141338703 2.0E-06 GGGGGTTCCCC 11 NFIL3_MA0025.1 JASPAR - 141343399 141343409 1.0E-06 TTATGTAACGA 11 SOX9_HMG_DBD_monomeric_9_1 SELEX - 141338653 141338661 9.0E-06 GAACAATGG 9 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 141340698 141340711 0.0E+00 TGTTAACATTTATA 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 141340698 141340711 3.0E-06 TATAAATGTTAACA 14 Pax4_MA0068.1 JASPAR - 141340664 141340693 2.0E-06 TAAAATTATCATGAATTCCATAACTCCTTC 30 SPIB_ETS_DBD_monomeric_14_1 SELEX + 141340523 141340536 0.0E+00 GAAAACAGGAAGTG 14 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX - 141337555 141337568 1.0E-05 TTCATAATCATCTA 14 LEF1_HMG_DBD_monomeric_15_1 SELEX - 141338758 141338772 3.0E-06 ATAGATGAAAGGGAG 15 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 141340698 141340711 0.0E+00 TGTTAACATTTATA 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 141340698 141340711 6.0E-06 TATAAATGTTAACA 14 POU6F2_POU_DBD_dimeric_16_1 SELEX + 141337550 141337565 4.0E-06 ATAGTTAGATGATTAT 16 POU6F2_POU_DBD_dimeric_16_1 SELEX - 141337550 141337565 1.0E-05 ATAATCATCTAACTAT 16 NFATC1_NFAT_full_dimeric_14_1 SELEX + 141337792 141337805 1.0E-06 TTTCCTATGGAAAC 14 NFATC1_NFAT_full_dimeric_14_1 SELEX - 141337792 141337805 1.0E-06 GTTTCCATAGGAAA 14 SOX2_HMG_full_dimeric_15_1 SELEX - 141343571 141343585 4.0E-06 CTGAATAACAGTGAA 15 OTX2_homeodomain_DBD_monomeric_8_1 SELEX - 141338379 141338386 7.0E-06 TTAATCCT 8 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 141343499 141343508 6.0E-06 AGCAGCTGCC 10 NFIX_NFI_full_monomeric_9_2 SELEX + 141337840 141337848 8.0E-06 AATGCCAAT 9 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 141340698 141340711 2.0E-06 TGTTAACATTTATA 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 141340698 141340711 3.0E-06 TATAAATGTTAACA 14 znf143_MA0088.1 JASPAR - 141340359 141340378 8.0E-06 CATTTTCCAGGGTGCAGCCA 20 SOX18_HMG_full_dimeric_15_1 SELEX - 141340702 141340716 9.0E-06 AAGAATATAAATGTT 15 CTCF_C2H2_full_monomeric_17_1 SELEX + 141340461 141340477 0.0E+00 AGCGCCATCTGGTGGCC 17 Tcf7_HMG_DBD_monomeric_12_1 SELEX - 141338761 141338772 5.0E-06 ATAGATGAAAGG 12 SOX14_HMG_DBD_dimeric_15_1 SELEX - 141343571 141343585 8.0E-06 CTGAATAACAGTGAA 15 SOX7_HMG_full_dimeric_16_1 SELEX - 141343564 141343579 1.0E-06 AACAGTGAAAAGAGTT 16 SOX7_HMG_full_dimeric_17_1 SELEX + 141340701 141340717 5.0E-06 TAACATTTATATTCTTC 17 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 141339670 141339690 6.0E-06 AAGGTGCTGCCTAAGCTACTA 21 NFKB1_NFAT_DBD_dimeric_13_1 SELEX + 141338692 141338704 6.0E-06 TGGGGAACCCCCA 13 NFKB1_NFAT_DBD_dimeric_13_1 SELEX - 141338692 141338704 7.0E-06 TGGGGGTTCCCCA 13 HESX1_homeodomain_DBD_dimeric_15_1 SELEX - 141337837 141337851 4.0E-06 CTAATTGGCATTGAA 15 PITX1_homeodomain_full_monomeric_9_1 SELEX - 141338379 141338387 2.0E-06 TTTAATCCT 9 EN1_homeodomain_full_dimeric_14_1 SELEX + 141337551 141337564 6.0E-06 TAGTTAGATGATTA 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 141340698 141340711 1.0E-06 TGTTAACATTTATA 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 141340698 141340711 2.0E-06 TATAAATGTTAACA 14 ERF_ETS_DBD_monomeric_10_1 SELEX + 141340527 141340536 9.0E-06 ACAGGAAGTG 10 FEV_MA0156.1 JASPAR - 141337861 141337868 1.0E-05 CAGGAAAT 8 Hltf_MA0109.1 JASPAR - 141343429 141343438 2.0E-06 AAACTTATAA 10 Pou5f1_MA0142.1 JASPAR - 141337977 141337991 7.0E-06 CTTGGTGATGCAGAG 15 ELF5_ETS_full_monomeric_11_1 SELEX + 141340526 141340536 6.0E-06 AACAGGAAGTG 11 NR3C1_MA0113.1 JASPAR + 141337852 141337869 3.0E-06 AGAAAGAGCATTTCCTGT 18 SOX9_MA0077.1 JASPAR - 141338653 141338661 5.0E-06 GAACAATGG 9 SPI1_ETS_full_monomeric_14_1 SELEX + 141340523 141340536 1.0E-06 GAAAACAGGAAGTG 14 POU3F3_POU_DBD_dimeric_12_1 SELEX + 141337558 141337569 3.0E-06 ATGATTATGAAA 12 POU3F3_POU_DBD_dimeric_12_1 SELEX - 141337558 141337569 7.0E-06 TTTCATAATCAT 12 Sox3_HMG_DBD_dimeric_17_1 SELEX - 141340701 141340717 8.0E-06 GAAGAATATAAATGTTA 17 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 141340551 141340563 9.0E-06 ATAAATATCCACA 13 Sox1_HMG_DBD_dimeric_15_2 SELEX - 141343571 141343585 8.0E-06 CTGAATAACAGTGAA 15 ZIC1_C2H2_full_monomeric_14_1 SELEX + 141337650 141337663 4.0E-06 GACCCCCTACTGGG 14 V_RUSH1A_02_M01107 TRANSFAC - 141343429 141343438 2.0E-06 AAACTTATAA 10 V_HOXA9_01_M01351 TRANSFAC - 141343430 141343446 6.0E-06 GCTGTCATAAACTTATA 17 V_FOXP1_01_M00987 TRANSFAC + 141340691 141340710 1.0E-06 TTACTTGTGTTAACATTTAT 20 V_SPI1_01_M01203 TRANSFAC + 141340523 141340539 1.0E-06 GAAAACAGGAAGTGGGT 17 V_LEF1_04_M02774 TRANSFAC + 141338757 141338773 8.0E-06 CCTCCCTTTCATCTATG 17 V_CDX2_Q5_01_M01659 TRANSFAC + 141340548 141340558 0.0E+00 TTCATAAATAT 11 V_OBOX5_05_M03066 TRANSFAC + 141338375 141338391 9.0E-06 TGTGAGGATTAAACGAA 17 V_SRY_07_M02813 TRANSFAC - 141340678 141340693 9.0E-06 TAAAATTATCATGAAT 16 V_NF1_Q6_01_M00806 TRANSFAC + 141337057 141337073 2.0E-06 ATGGATCAGAGCCAAAT 17 V_PAX4_03_M00378 TRANSFAC - 141338455 141338466 7.0E-06 AACACTCACCCC 12 V_SOX30_03_M02804 TRANSFAC - 141338649 141338664 0.0E+00 AGAGAACAATGGACTT 16 V_ETS_B_M00340 TRANSFAC + 141340526 141340539 2.0E-06 AACAGGAAGTGGGT 14 V_POU5F1_02_M02245 TRANSFAC - 141337977 141337991 7.0E-06 CTTGGTGATGCAGAG 15 V_EOMES_03_M02747 TRANSFAC - 141338479 141338495 4.0E-06 CATAGGGTGTGACAAGT 17 V_CEBP_C_M00201 TRANSFAC + 141338459 141338476 5.0E-06 TGAGTGTTGTAATCTGCA 18 V_NFAT3_Q3_M01734 TRANSFAC - 141343380 141343389 3.0E-06 TCATTTTCCT 10 V_SOX11_04_M02899 TRANSFAC - 141340679 141340692 1.0E-06 AAAATTATCATGAA 14 V_RFX4_03_M02789 TRANSFAC - 141337757 141337771 6.0E-06 CAGCCTAGCAACTGT 15 V_EAR2_Q2_M01728 TRANSFAC - 141340478 141340491 1.0E-05 TTTTCTCTGCCTTT 14 V_NKX24_01_M01350 TRANSFAC + 141338289 141338304 4.0E-06 CAAGTCACTTAACTTT 16 V_PU1_Q4_M01172 TRANSFAC - 141340524 141340542 0.0E+00 GGCACCCACTTCCTGTTTT 19 V_BRN2_01_M00145 TRANSFAC - 141343486 141343501 9.0E-06 GCCATCATAAATCAGT 16 V_NR3C1_01_M02219 TRANSFAC + 141337852 141337869 3.0E-06 AGAAAGAGCATTTCCTGT 18 V_LHX8_01_M01440 TRANSFAC - 141337839 141337855 7.0E-06 TTCTCTAATTGGCATTG 17 V_ETS_Q4_M00771 TRANSFAC - 141340528 141340539 0.0E+00 ACCCACTTCCTG 12 V_ROAZ_01_M00467 TRANSFAC - 141339710 141339723 4.0E-06 GCACCCTTGTGTCC 14 V_SOX7_03_M02807 TRANSFAC - 141338646 141338667 1.0E-06 TGCAGAGAACAATGGACTTCAA 22 V_SOX7_03_M02807 TRANSFAC - 141340716 141340737 7.0E-06 TAGATAAAACAATGTCCTCTGA 22 V_OBOX5_02_M01480 TRANSFAC + 141338375 141338391 9.0E-06 TGTGAGGATTAAACGAA 17 V_MTERF_01_M01245 TRANSFAC + 141337662 141337675 5.0E-06 GGGAACTAGTTGGT 14 V_DBP_Q6_01_M01872 TRANSFAC - 141343402 141343409 5.0E-06 TTATGTAA 8 V_TGIF_02_M01346 TRANSFAC + 141343435 141343451 7.0E-06 GTTTATGACAGCCAGGA 17 V_GATA3_05_M02859 TRANSFAC - 141340614 141340635 8.0E-06 ATTAAGAGATACTATTGTCATC 22 V_HNF1_Q6_M00790 TRANSFAC - 141337554 141337571 1.0E-05 TGTTTCATAATCATCTAA 18 V_TEF_Q6_M00672 TRANSFAC - 141340695 141340706 1.0E-06 ATGTTAACACAA 12 V_SOX8_04_M02912 TRANSFAC + 141340676 141340689 1.0E-05 GAATTCATGATAAT 14 V_NFAT_Q6_M00302 TRANSFAC - 141337789 141337800 1.0E-06 CATAGGAAAAAG 12 V_SOX1_04_M02906 TRANSFAC - 141340698 141340712 3.0E-06 ATATAAATGTTAACA 15 V_CDX2_01_M01449 TRANSFAC - 141343432 141343447 8.0E-06 GGCTGTCATAAACTTA 16 V_CDX2_Q5_M00729 TRANSFAC + 141343431 141343444 3.0E-06 ATAAGTTTATGACA 14 V_ASCL2_03_M02737 TRANSFAC - 141343495 141343511 8.0E-06 AGCAGCAGCTGCCATCA 17 V_ASCL2_03_M02737 TRANSFAC + 141343496 141343512 8.0E-06 GATGGCAGCTGCTGCTA 17 V_ELF5_01_M01197 TRANSFAC + 141333958 141333968 1.0E-05 TTGAGGAAGTA 11 V_GADP_01_M01258 TRANSFAC - 141340525 141340536 9.0E-06 CACTTCCTGTTT 12 V_REST_01_M01256 TRANSFAC + 141340220 141340241 5.0E-06 GCCAGGCCTTGTCCTAAGTGCT 22 V_OCT1_04_M00138 TRANSFAC - 141340698 141340720 7.0E-06 TCTGAAGAATATAAATGTTAACA 23 V_SPIB_01_M01204 TRANSFAC + 141340523 141340539 1.0E-06 GAAAACAGGAAGTGGGT 17 V_TEL2_Q6_M00678 TRANSFAC - 141340528 141340537 6.0E-06 CCACTTCCTG 10 V_BBX_04_M02843 TRANSFAC - 141340693 141340709 0.0E+00 TAAATGTTAACACAAGT 17 V_PNR_01_M01650 TRANSFAC - 141343488 141343501 5.0E-06 GCCATCATAAATCA 14 V_CETS1P54_01_M00032 TRANSFAC + 141340527 141340536 9.0E-06 ACAGGAAGTG 10 V_TGIF1_01_M03111 TRANSFAC + 141343435 141343451 7.0E-06 GTTTATGACAGCCAGGA 17 V_CTCF_02_M01259 TRANSFAC - 141339727 141339746 1.0E-06 GGGCTGCCAGCAGGGGGCAA 20 V_CTCF_02_M01259 TRANSFAC - 141340462 141340481 0.0E+00 CTTTGGCCACCAGATGGCGC 20 V_SOX11_03_M02795 TRANSFAC - 141338082 141338098 4.0E-06 ATAGGAACAAAGAGAGT 17 V_SOX11_03_M02795 TRANSFAC - 141338649 141338665 1.0E-06 CAGAGAACAATGGACTT 17 V_CTCF_01_M01200 TRANSFAC - 141339725 141339744 0.0E+00 GCTGCCAGCAGGGGGCAATG 20 V_CTCF_01_M01200 TRANSFAC - 141340460 141340479 0.0E+00 TTGGCCACCAGATGGCGCTC 20 V_SOX9_B1_M00410 TRANSFAC - 141338651 141338664 1.0E-06 AGAGAACAATGGAC 14 V_NKX23_01_M01457 TRANSFAC + 141340231 141340246 1.0E-05 TCCTAAGTGCTTTACC 16 V_CETS1P54_03_M01078 TRANSFAC + 141340524 141340539 4.0E-06 AAAACAGGAAGTGGGT 16 V_TFIII_Q6_M00706 TRANSFAC + 141340398 141340406 6.0E-06 AGAGGGAGG 9 V_VBP_01_M00228 TRANSFAC + 141343401 141343410 7.0E-06 GTTACATAAA 10 V_ELF1_Q6_M00746 TRANSFAC + 141340524 141340535 1.0E-06 AAAACAGGAAGT 12 V_USF_Q6_01_M00796 TRANSFAC + 141339743 141339754 3.0E-06 GCCCACGTGACA 12 V_CREM_Q6_M01820 TRANSFAC - 141338438 141338448 6.0E-06 TAACGTCACTG 11 V_CREBP1CJUN_01_M00041 TRANSFAC + 141338441 141338448 1.0E-05 TGACGTTA 8 V_SOX15_03_M02799 TRANSFAC - 141338649 141338665 3.0E-06 CAGAGAACAATGGACTT 17 V_ZFP187_04_M02934 TRANSFAC + 141337537 141337552 7.0E-06 ACAACCTTGTCCCATA 16 V_ISX_01_M01331 TRANSFAC + 141337840 141337855 5.0E-06 AATGCCAATTAGAGAA 16 V_NFYC_Q5_M02107 TRANSFAC + 141337841 141337854 5.0E-06 ATGCCAATTAGAGA 14 V_GABPBETA_Q3_M01876 TRANSFAC - 141337859 141337869 7.0E-06 ACAGGAAATGC 11 V_GABPBETA_Q3_M01876 TRANSFAC + 141340527 141340537 5.0E-06 ACAGGAAGTGG 11 V_MYF6_04_M02885 TRANSFAC + 141343472 141343486 1.0E-06 AGAAACAGCCACACA 15 V_GFI1B_01_M01058 TRANSFAC - 141343483 141343494 7.0E-06 TAAATCAGTGTG 12 V_PARP_Q3_M01211 TRANSFAC - 141337789 141337798 8.0E-06 TAGGAAAAAG 10 V_TFIIA_Q6_M00707 TRANSFAC - 141343529 141343540 5.0E-06 TCTGTAAGGAGG 12 V_OTX2_01_M01387 TRANSFAC + 141338375 141338391 5.0E-06 TGTGAGGATTAAACGAA 17 V_P53_01_M00034 TRANSFAC - 141340214 141340233 8.0E-06 GGACAAGGCCTGGCATGTGG 20 V_PLZF_02_M01075 TRANSFAC + 141340689 141340717 8.0E-06 TTTTACTTGTGTTAACATTTATATTCTTC 29 V_ETS1_B_M00339 TRANSFAC + 141340527 141340541 0.0E+00 ACAGGAAGTGGGTGC 15 V_HSF_Q6_M00641 TRANSFAC + 141338571 141338583 4.0E-06 TTCCAGAAGCTGC 13 V_SRF_06_M02916 TRANSFAC + 141337352 141337368 1.0E-05 CCTAAAAGAAATAAGTA 17 V_HLF_01_M00260 TRANSFAC + 141343401 141343410 1.0E-05 GTTACATAAA 10 V_PITX2_01_M01447 TRANSFAC + 141338375 141338391 7.0E-06 TGTGAGGATTAAACGAA 17 V_PIT1_Q6_M00802 TRANSFAC - 141337553 141337570 8.0E-06 GTTTCATAATCATCTAAC 18 V_S8_02_M01376 TRANSFAC + 141337840 141337856 3.0E-06 AATGCCAATTAGAGAAA 17 V_LHX4_01_M01421 TRANSFAC - 141337839 141337855 4.0E-06 TTCTCTAATTGGCATTG 17 V_HOXA10_01_M01464 TRANSFAC - 141343431 141343446 9.0E-06 GCTGTCATAAACTTAT 16 V_SOX5_07_M02909 TRANSFAC - 141340679 141340695 4.0E-06 AGTAAAATTATCATGAA 17 V_TAACC_B_M00331 TRANSFAC - 141343550 141343572 1.0E-06 AAAAGAGTTTTGTAACCCCAAGG 23 V_ELK1_03_M01163 TRANSFAC + 141340526 141340536 1.0E-05 AACAGGAAGTG 11 V_SOX5_04_M02910 TRANSFAC - 141343485 141343499 1.0E-05 CATCATAAATCAGTG 15 V_ATF_B_M00338 TRANSFAC + 141338440 141338451 6.0E-06 GTGACGTTATTG 12 V_FEV_01_M02269 TRANSFAC - 141337861 141337868 1.0E-05 CAGGAAAT 8 V_OTX1_01_M01366 TRANSFAC + 141338375 141338391 8.0E-06 TGTGAGGATTAAACGAA 17 V_BHLHB2_04_M02845 TRANSFAC - 141338014 141338036 0.0E+00 CATCAGTCCACGTGCAAGCAGGT 23 V_BHLHB2_04_M02845 TRANSFAC + 141338015 141338037 2.0E-06 CCTGCTTGCACGTGGACTGATGC 23 V_PAX4_04_M00380 TRANSFAC - 141338455 141338484 8.0E-06 ACAAGTTGTGCAGATTACAACACTCACCCC 30 V_NF1_Q6_M00193 TRANSFAC - 141337056 141337073 6.0E-06 ATTTGGCTCTGATCCATG 18 V_NKX21_01_M01312 TRANSFAC + 141338289 141338304 7.0E-06 CAAGTCACTTAACTTT 16 V_HOXC9_01_M01416 TRANSFAC - 141343432 141343447 5.0E-06 GGCTGTCATAAACTTA 16 V_HSF1_Q6_01_M02017 TRANSFAC - 141338570 141338583 5.0E-06 GCAGCTTCTGGAAT 14

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