Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

EMC4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 51234 ER membrane protein complex subunit 4 chr15 + 34512244 - 34517744 34517244 Transcription Factor Binding Sites   Download all TFBS in the EMC4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NKX2-8_homeodomain_full_monomeric_9_1 SELEX - 34517358 34517366 3.0E-06 CCACTTGAA 9 GABPA_MA0062.2 JASPAR + 34517077 34517087 7.0E-06 GCGGAAGTGGC 11 GABPA_MA0062.2 JASPAR + 34517209 34517219 3.0E-06 CCGGAAGTGCA 11 SPIC_ETS_full_monomeric_14_1 SELEX - 34516723 34516736 5.0E-06 AAAAAAAGGAAGCC 14 THRA_nuclearreceptor_FL_dimeric_18_1 SELEX + 34516554 34516571 5.0E-06 TTTACCTCGCAAGGTTAC 18 THRA_nuclearreceptor_FL_dimeric_18_1 SELEX - 34516554 34516571 4.0E-06 GTAACCTTGCGAGGTAAA 18 ZNF713_C2H2_full_monomeric_17_1 SELEX - 34516718 34516734 2.0E-06 AAAAAGGAAGCCAAGAA 17 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 34516542 34516558 2.0E-06 GTAAACAGTTCTAACCA 17 HNF1B_MA0153.1 JASPAR + 34516627 34516638 7.0E-06 CTACTAAGTAAC 12 EWSR1-FLI1_MA0149.1 JASPAR - 34517118 34517135 7.0E-06 GAAAAGCAGGGAGGAAAA 18 Esrrb_MA0141.1 JASPAR + 34516640 34516651 1.0E-06 CGCTCAAGGTCA 12 MAFF_bZIP_DBD_dimeric_15_1 SELEX + 34516986 34517000 7.0E-06 ACGCTGAGTCAGTAT 15 SPIB_ETS_DBD_monomeric_14_1 SELEX - 34516723 34516736 8.0E-06 AAAAAAAGGAAGCC 14 THRB_nuclearreceptor_DBD_dimeric_18_1 SELEX - 34516554 34516571 6.0E-06 GTAACCTTGCGAGGTAAA 18 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX + 34517468 34517479 6.0E-06 AGCCCTCAGGCA 12 Mafb_bZIP_DBD_dimeric_17_1 SELEX + 34516985 34517001 7.0E-06 AACGCTGAGTCAGTATG 17 MAFK_bZIP_full_dimeric_15_1 SELEX - 34516986 34517000 5.0E-06 ATACTGACTCAGCGT 15 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX + 34516643 34516652 1.0E-06 TCAAGGTCAA 10 NFATC1_NFAT_full_dimeric_15_1 SELEX + 34517176 34517190 1.0E-06 TTTCCAGGGCGGAAA 15 NFATC1_NFAT_full_dimeric_15_1 SELEX - 34517176 34517190 1.0E-06 TTTCCGCCCTGGAAA 15 NKX2-3_homeodomain_full_monomeric_10_1 SELEX - 34517358 34517367 8.0E-06 CCCACTTGAA 10 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX + 34516642 34516652 2.0E-06 CTCAAGGTCAA 11 TFAP2C_TFAP_full_dimeric_12_1 SELEX + 34517468 34517479 8.0E-06 AGCCCTCAGGCA 12 Myf_MA0055.1 JASPAR + 34517393 34517404 6.0E-06 AGGCAGCAGGTG 12 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX + 34516643 34516653 2.0E-06 TCAAGGTCAAG 11 GABPA_ETS_full_monomeric_10_1 SELEX + 34517208 34517217 9.0E-06 GCCGGAAGTG 10 ETV6_ETS_full_monomeric_10_1 SELEX + 34517076 34517085 5.0E-06 CGCGGAAGTG 10 SPI1_ETS_full_monomeric_14_1 SELEX - 34516723 34516736 8.0E-06 AAAAAAAGGAAGCC 14 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX + 34517468 34517479 6.0E-06 AGCCCTCAGGCA 12 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 34516730 34516742 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 34516731 34516743 6.0E-06 AAAAAAAAAAAAA 13 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX + 34517468 34517479 8.0E-06 AGCCCTCAGGCA 12 V_TEL1_02_M02070 TRANSFAC + 34517076 34517085 8.0E-06 CGCGGAAGTG 10 V_TCF3_01_M01594 TRANSFAC + 34516728 34516740 5.0E-06 CCTTTTTTTTTTT 13 V_BCL6_01_M01183 TRANSFAC + 34516725 34516740 7.0E-06 CTTCCTTTTTTTTTTT 16 V_ERR3_Q2_01_M02094 TRANSFAC + 34516641 34516653 3.0E-06 GCTCAAGGTCAAG 13 V_LRH1_Q5_01_M02098 TRANSFAC + 34516641 34516651 2.0E-06 GCTCAAGGTCA 11 V_GABP_B_M00341 TRANSFAC + 34517208 34517219 0.0E+00 GCCGGAAGTGCA 12 V_NFAT3_Q3_M01734 TRANSFAC + 34517115 34517124 6.0E-06 TTTTTTTCCT 10 V_GCNF_Q3_M02009 TRANSFAC + 34516644 34516653 1.0E-06 CAAGGTCAAG 10 V_NKX25_Q6_M02108 TRANSFAC - 34517357 34517367 1.0E-06 CCCACTTGAAG 11 V_TR4_Q2_M01725 TRANSFAC - 34517032 34517042 1.0E-06 CCTGACCTCTG 11 V_PITX2_Q6_M02114 TRANSFAC + 34516660 34516669 5.0E-06 TTTAAACCCA 10 V_PITX2_Q6_M02114 TRANSFAC - 34516859 34516868 1.0E-06 TGTAATCCCA 10 V_HEN1_01_M00068 TRANSFAC - 34517297 34517318 2.0E-06 CATGGCAACAGCTGCGTCCTAT 22 V_AP4_Q6_02_M01860 TRANSFAC + 34517304 34517316 1.0E-05 GCAGCTGTTGCCA 13 V_PU1_Q4_M01172 TRANSFAC + 34516717 34516735 2.0E-06 TTTCTTGGCTTCCTTTTTT 19 V_AP4_Q6_01_M00927 TRANSFAC - 34517304 34517312 1.0E-05 AACAGCTGC 9 V_TCFAP2E_04_M02926 TRANSFAC - 34516729 34516742 4.0E-06 AAAAAAAAAAAAAG 14 V_TCFAP2E_04_M02926 TRANSFAC - 34516730 34516743 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 34516731 34516744 2.0E-06 CAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 34516732 34516745 3.0E-06 TCAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 34516733 34516746 2.0E-06 CTCAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 34516735 34516748 2.0E-06 GTCTCAAAAAAAAA 14 V_RPC155_01_M01798 TRANSFAC - 34516657 34516672 1.0E-06 TCCTGGGTTTAAATCC 16 V_RPC155_01_M01798 TRANSFAC - 34516942 34516957 0.0E+00 TCAGGAGTTCGAGACC 16 V_ELF4_04_M02850 TRANSFAC - 34516730 34516746 3.0E-06 CTCAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 34516731 34516747 0.0E+00 TCTCAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 34516732 34516748 1.0E-06 GTCTCAAAAAAAAAAAA 17 V_MYF_01_M01302 TRANSFAC + 34517393 34517404 6.0E-06 AGGCAGCAGGTG 12 V_ZFP105_03_M02827 TRANSFAC - 34516727 34516741 1.0E-06 AAAAAAAAAAAAGGA 15 V_ZFP105_03_M02827 TRANSFAC - 34516728 34516742 2.0E-06 AAAAAAAAAAAAAGG 15 V_ZFP105_03_M02827 TRANSFAC - 34516729 34516743 0.0E+00 AAAAAAAAAAAAAAG 15 V_ZFP105_03_M02827 TRANSFAC - 34516730 34516744 1.0E-06 CAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 34516731 34516745 2.0E-06 TCAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 34516732 34516746 1.0E-06 CTCAAAAAAAAAAAA 15 V_IRF2_01_M00063 TRANSFAC - 34516751 34516763 1.0E-05 CAAGAGCGAAACT 13 V_ER81_02_M02065 TRANSFAC + 34517208 34517217 1.0E-05 GCCGGAAGTG 10 V_HNF1B_04_M02266 TRANSFAC + 34516627 34516638 7.0E-06 CTACTAAGTAAC 12 V_PAX5_01_M00143 TRANSFAC - 34517110 34517137 5.0E-06 TAGAAAAGCAGGGAGGAAAAAAAACCAG 28 V_GADP_01_M01258 TRANSFAC - 34517206 34517217 0.0E+00 CACTTCCGGCGC 12 V_AHR_01_M00139 TRANSFAC + 34516766 34516783 3.0E-06 GCCCAGGCTGGCGTGCAA 18 V_ELK1_02_M00025 TRANSFAC + 34517205 34517218 9.0E-06 CGCGCCGGAAGTGC 14 V_RFX_Q6_M00975 TRANSFAC + 34517308 34517316 4.0E-06 CTGTTGCCA 9 V_MAFK_Q3_M02022 TRANSFAC - 34516986 34516996 3.0E-06 TGACTCAGCGT 11 V_TEL1_01_M01993 TRANSFAC + 34517076 34517085 8.0E-06 CGCGGAAGTG 10 V_SOX11_03_M02795 TRANSFAC - 34516676 34516692 7.0E-06 CCTGGAACAAAAGATTC 17 V_BLIMP1_Q6_M01066 TRANSFAC + 34516573 34516588 2.0E-06 GTGCAAGTGAAATGAA 16 V_ISGF4G_04_M02875 TRANSFAC - 34516546 34516559 6.0E-06 GGTAAACAGTTCTA 14 V_AP1_Q2_01_M00924 TRANSFAC - 34516985 34516996 9.0E-06 TGACTCAGCGTT 12 V_ELK1_01_M00007 TRANSFAC + 34517205 34517220 6.0E-06 CGCGCCGGAAGTGCAT 16 V_MAF_Q6_01_M00983 TRANSFAC + 34516987 34516997 9.0E-06 CGCTGAGTCAG 11 V_SF1_Q6_01_M01132 TRANSFAC - 34516643 34516651 3.0E-06 TGACCTTGA 9 V_MTF1_06_M02882 TRANSFAC - 34516728 34516741 6.0E-06 AAAAAAAAAAAAGG 14 V_MTF1_06_M02882 TRANSFAC - 34516729 34516742 1.0E-06 AAAAAAAAAAAAAG 14 V_MTF1_06_M02882 TRANSFAC - 34516730 34516743 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 34516731 34516744 8.0E-06 CAAAAAAAAAAAAA 14 V_MYF6_04_M02885 TRANSFAC - 34517250 34517264 1.0E-05 CACAACAGGCCCACC 15 V_FAC1_01_M00456 TRANSFAC - 34516730 34516743 3.0E-06 AAAAAAAAAAAAAA 14 V_HEN1_02_M00058 TRANSFAC + 34517297 34517318 0.0E+00 ATAGGACGCAGCTGTTGCCATG 22 V_HEN1_02_M00058 TRANSFAC - 34517297 34517318 0.0E+00 CATGGCAACAGCTGCGTCCTAT 22 V_HEN1_02_M00058 TRANSFAC + 34517391 34517412 4.0E-06 GGAGGCAGCAGGTGAGGCACCT 22 V_HEN1_02_M00058 TRANSFAC - 34517391 34517412 5.0E-06 AGGTGCCTCACCTGCTGCCTCC 22 V_LUN1_01_M00480 TRANSFAC - 34516847 34516863 1.0E-06 TCCCAGCTACTTAGGAG 17 V_ERR2_01_M01589 TRANSFAC + 34516643 34516654 1.0E-06 TCAAGGTCAAGC 12 V_ZBTB12_04_M02928 TRANSFAC + 34516540 34516554 5.0E-06 TGTGGTTAGAACTGT 15 V_BDP1_01_M01796 TRANSFAC + 34516657 34516668 4.0E-06 GGATTTAAACCC 12 V_NRF2_Q4_M00821 TRANSFAC + 34516986 34516998 5.0E-06 ACGCTGAGTCAGT 13 V_PITX2_Q2_M00482 TRANSFAC - 34516858 34516868 1.0E-06 TGTAATCCCAG 11 V_ESRRA_03_M02748 TRANSFAC + 34516640 34516656 5.0E-06 CGCTCAAGGTCAAGCTA 17 V_MEF3_B_M00319 TRANSFAC - 34517459 34517471 7.0E-06 GGCTCAGGTCTCA 13 V_SRF_06_M02916 TRANSFAC - 34516726 34516742 1.0E-06 AAAAAAAAAAAAAGGAA 17 V_SRF_06_M02916 TRANSFAC - 34516727 34516743 0.0E+00 AAAAAAAAAAAAAAGGA 17 V_SRF_06_M02916 TRANSFAC - 34516728 34516744 1.0E-06 CAAAAAAAAAAAAAAGG 17 V_SRF_06_M02916 TRANSFAC - 34516729 34516745 1.0E-06 TCAAAAAAAAAAAAAAG 17 V_SRF_06_M02916 TRANSFAC - 34516730 34516746 0.0E+00 CTCAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 34516731 34516747 0.0E+00 TCTCAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 34516732 34516748 2.0E-06 GTCTCAAAAAAAAAAAA 17 V_EWSR1FLI1_01_M02252 TRANSFAC - 34517118 34517135 7.0E-06 GAAAAGCAGGGAGGAAAA 18 V_ERR1_Q2_01_M02093 TRANSFAC + 34516644 34516654 1.0E-06 CAAGGTCAAGC 11 V_TAACC_B_M00331 TRANSFAC - 34516717 34516739 7.0E-06 AAAAAAAAAAGGAAGCCAAGAAA 23 V_BRF1_01_M01747 TRANSFAC - 34516656 34516668 8.0E-06 GGGTTTAAATCCT 13 V_TCF3_05_M02920 TRANSFAC - 34516733 34516747 4.0E-06 TCTCAAAAAAAAAAA 15 V_NANOG_02_M01247 TRANSFAC - 34516723 34516742 4.0E-06 AAAAAAAAAAAAAGGAAGCC 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.