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SS18L2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 51188 synovial sarcoma translocation gene on chromosome 18-like 2 chr3 + 42627297 - 42632797 42632297 Transcription Factor Binding Sites   Download all TFBS in the SS18L2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 42633538 42633554 8.0E-06 ACACACAAAGACAAACA 17 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 42632862 42632873 2.0E-06 ACTAAAAATACA 12 SOX8_HMG_full_dimeric_15_1 SELEX - 42632104 42632118 5.0E-06 AGCACCTCCAGTGTT 15 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 42632862 42632873 6.0E-06 ACTAAAAATACA 12 RARG_nuclearreceptor_full_dimeric_18_1 SELEX + 42633565 42633582 1.0E-05 AAGTTAAGTCAAAGGTAA 18 MEF2B_MADS_full_dimeric_12_1 SELEX - 42632862 42632873 3.0E-06 ACTAAAAATACA 12 RFX2_RFX_DBD_dimeric_15_1 SELEX + 42631505 42631519 0.0E+00 CTTTGCTAAGGAACC 15 NFAT5_NFAT_DBD_dimeric_14_1 SELEX + 42635374 42635387 8.0E-06 GTGGAAAAGCCCCC 14 RFX3_RFX_DBD_dimeric_15_1 SELEX + 42631505 42631519 1.0E-06 CTTTGCTAAGGAACC 15 NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX - 42632905 42632920 8.0E-06 GAGGTCAGGAGTTCGA 16 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX + 42631897 42631911 5.0E-06 CGGATCACGAGGTCA 15 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX - 42632906 42632920 2.0E-06 GAGGTCAGGAGTTCG 15 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX - 42632914 42632928 5.0E-06 CGGATCACGAGGTCA 15 NRF1_NRF_full_dimeric_12_1 SELEX + 42632177 42632188 7.0E-06 TGCGCAAGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 42632177 42632188 7.0E-06 TGCGCTTGCGCA 12 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 42632078 42632090 6.0E-06 AAAAAAAAAAAAA 13 Zfx_MA0146.1 JASPAR - 42631883 42631896 5.0E-06 CCCGCCTCGGCCTC 14 V_FOXP1_01_M00987 TRANSFAC - 42633536 42633555 0.0E+00 TTGTTTGTCTTTGTGTGTGT 20 V_TCF3_01_M01594 TRANSFAC + 42632858 42632870 3.0E-06 TTTTTGTATTTTT 13 V_DUXL_01_M01390 TRANSFAC + 42632432 42632448 9.0E-06 GAAGTCAATCAAGAGAC 17 V_FOXA2_04_M02749 TRANSFAC + 42637275 42637291 7.0E-06 TACATGTAAATAGTGAA 17 V_HMGIY_Q3_M01010 TRANSFAC - 42632081 42632095 6.0E-06 CATGCTTTTTTTTTT 15 V_BCL6_01_M01183 TRANSFAC - 42633555 42633570 7.0E-06 TAACTTGTAAATCCTT 16 V_LMAF_Q2_M01139 TRANSFAC + 42632130 42632138 6.0E-06 GGTCAGCAG 9 V_IK_Q5_M01169 TRANSFAC + 42631878 42631887 3.0E-06 TTTGGGAGGC 10 V_IK_Q5_M01169 TRANSFAC - 42632938 42632947 3.0E-06 TTTGGGAGGC 10 V_MEF2_02_M00231 TRANSFAC - 42635254 42635275 7.0E-06 TACCATGTATAAAATAGCACTC 22 V_GTF2IRD1_01_M01229 TRANSFAC - 42630164 42630172 3.0E-06 GGGATTATG 9 V_HNF3_Q6_01_M01012 TRANSFAC - 42633542 42633559 1.0E-06 TCCTTTGTTTGTCTTTGT 18 V_P50RELAP65_Q5_01_M01224 TRANSFAC + 42632877 42632888 1.0E-05 GGGTTTCCCCAT 12 V_PITX2_Q6_M02114 TRANSFAC - 42632823 42632832 1.0E-06 TGTAATCCCA 10 V_NKX24_01_M01350 TRANSFAC + 42630109 42630124 7.0E-06 CAAGTCACTTAAACTT 16 V_AFP1_Q6_M00616 TRANSFAC + 42631965 42631975 7.0E-06 AAAAATTAGAC 11 V_LYF1_01_M00141 TRANSFAC + 42631878 42631886 9.0E-06 TTTGGGAGG 9 V_LYF1_01_M00141 TRANSFAC - 42632939 42632947 9.0E-06 TTTGGGAGG 9 V_TCFAP2E_04_M02926 TRANSFAC + 42631958 42631971 6.0E-06 TAATACAAAAAATT 14 V_TCFAP2E_04_M02926 TRANSFAC + 42632073 42632086 0.0E+00 ATCTCAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 42632075 42632088 2.0E-06 CTCAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 42632076 42632089 3.0E-06 TCAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 42632077 42632090 2.0E-06 CAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 42632078 42632091 4.0E-06 AAAAAAAAAAAAAG 14 V_MEF2A_Q6_M02024 TRANSFAC + 42632864 42632873 4.0E-06 TATTTTTAGT 10 V_LXRB_RXRA_Q5_M02021 TRANSFAC - 42632907 42632921 6.0E-06 CGAGGTCAGGAGTTC 15 V_RPC155_01_M01798 TRANSFAC - 42632901 42632916 0.0E+00 TCAGGAGTTCGAGACT 16 V_ELF4_04_M02850 TRANSFAC + 42631956 42631972 6.0E-06 ACTAATACAAAAAATTA 17 V_ELF4_04_M02850 TRANSFAC + 42632073 42632089 5.0E-06 ATCTCAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 42632074 42632090 0.0E+00 TCTCAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 42632076 42632092 1.0E-06 TCAAAAAAAAAAAAAGC 17 V_GC_01_M00255 TRANSFAC + 42632004 42632017 1.0E-06 AGGAGGCGGAGCTT 14 V_SOX7_03_M02807 TRANSFAC + 42633544 42633565 7.0E-06 AAAGACAAACAAAGGATTTACA 22 V_ZFP105_03_M02827 TRANSFAC + 42632075 42632089 1.0E-06 CTCAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 42632076 42632090 2.0E-06 TCAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 42632077 42632091 1.0E-06 CAAAAAAAAAAAAAG 15 V_ZFP105_03_M02827 TRANSFAC + 42632078 42632092 9.0E-06 AAAAAAAAAAAAAGC 15 V_ZFP105_03_M02827 TRANSFAC + 42632079 42632093 1.0E-06 AAAAAAAAAAAAGCA 15 V_SOX1_04_M02906 TRANSFAC + 42630217 42630231 5.0E-06 ATGTTATTGTCATTC 15 V_RSRFC4_Q2_M00407 TRANSFAC - 42632859 42632875 4.0E-06 ATACTAAAAATACAAAA 17 V_IRX4_01_M01410 TRANSFAC - 42637270 42637286 0.0E+00 TATTTACATGTATTTTA 17 V_IRX4_01_M01410 TRANSFAC + 42637271 42637287 0.0E+00 AAAATACATGTAAATAG 17 V_RFX4_04_M02893 TRANSFAC - 42630383 42630397 1.0E-05 CTTCCTGGTTACCAA 15 V_HNF3_Q6_M00791 TRANSFAC + 42633544 42633556 3.0E-06 AAAGACAAACAAA 13 V_MEF2_03_M00232 TRANSFAC - 42632858 42632879 1.0E-05 CCCCATACTAAAAATACAAAAA 22 V_DUXBL_01_M02968 TRANSFAC + 42632432 42632448 9.0E-06 GAAGTCAATCAAGAGAC 17 V_SOX12_04_M02900 TRANSFAC + 42631956 42631971 6.0E-06 ACTAATACAAAAAATT 16 V_SOX12_04_M02900 TRANSFAC + 42633536 42633551 4.0E-06 ACACACACAAAGACAA 16 V_SOX12_04_M02900 TRANSFAC + 42633542 42633557 9.0E-06 ACAAAGACAAACAAAG 16 V_SOX12_04_M02900 TRANSFAC + 42633546 42633561 1.0E-06 AGACAAACAAAGGATT 16 V_MEF2_04_M00233 TRANSFAC - 42632858 42632879 4.0E-06 CCCCATACTAAAAATACAAAAA 22 V_RREB1_01_M00257 TRANSFAC + 42632148 42632161 6.0E-06 CCCCAACCCACAAG 14 V_PBX1_05_M01967 TRANSFAC - 42632431 42632444 8.0E-06 CTTGATTGACTTCC 14 V_KLF7_03_M02773 TRANSFAC + 42632284 42632299 9.0E-06 TGTACCCCGCCCTGTA 16 V_SMAD4_Q6_M00733 TRANSFAC + 42635311 42635325 6.0E-06 GTAAGGGAGCCAGCT 15 V_IRX3_01_M01318 TRANSFAC - 42637270 42637286 0.0E+00 TATTTACATGTATTTTA 17 V_IRX3_01_M01318 TRANSFAC + 42637271 42637287 0.0E+00 AAAATACATGTAAATAG 17 V_SOX11_03_M02795 TRANSFAC + 42630124 42630140 3.0E-06 TTATGAACAAAAGTATA 17 V_SOX11_03_M02795 TRANSFAC + 42633546 42633562 0.0E+00 AGACAAACAAAGGATTT 17 V_IRX5_01_M01472 TRANSFAC - 42637270 42637286 0.0E+00 TATTTACATGTATTTTA 17 V_IRX5_01_M01472 TRANSFAC + 42637271 42637287 0.0E+00 AAAATACATGTAAATAG 17 V_FOXM1_01_M00630 TRANSFAC + 42631854 42631862 4.0E-06 AGATTGAGT 9 V_ELK1_01_M00007 TRANSFAC + 42632425 42632440 5.0E-06 CAAGGCGGAAGTCAAT 16 V_IRX3_02_M01485 TRANSFAC - 42637270 42637286 0.0E+00 TATTTACATGTATTTTA 17 V_IRX3_02_M01485 TRANSFAC + 42637271 42637287 0.0E+00 AAAATACATGTAAATAG 17 V_MTF1_06_M02882 TRANSFAC + 42632077 42632090 8.0E-06 CAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 42632078 42632091 1.0E-06 AAAAAAAAAAAAAG 14 V_MTF1_06_M02882 TRANSFAC + 42632079 42632092 5.0E-06 AAAAAAAAAAAAGC 14 V_TAL1_01_M01591 TRANSFAC + 42630297 42630309 1.0E-06 TTTCCTTTTCTGC 13 V_MYOD_Q6_01_M00929 TRANSFAC + 42635365 42635382 9.0E-06 AAGCATCAGGTGGAAAAG 18 V_LUN1_01_M00480 TRANSFAC - 42632811 42632827 9.0E-06 TCCCAGCTACTCAGGAG 17 V_ESRRA_04_M02852 TRANSFAC + 42633466 42633482 7.0E-06 GTGAAGGGGTCAGGCCA 17 V_ZFP206_01_M01742 TRANSFAC + 42632177 42632187 5.0E-06 TGCGCAAGCGC 11 V_NRF1_Q6_M00652 TRANSFAC - 42632177 42632186 8.0E-06 CGCTTGCGCA 10 V_PITX2_Q2_M00482 TRANSFAC - 42632822 42632832 1.0E-06 TGTAATCCCAG 11 V_FOX_Q2_M00809 TRANSFAC - 42633545 42633557 7.0E-06 CTTTGTTTGTCTT 13 V_RSRFC4_01_M00026 TRANSFAC + 42632860 42632875 9.0E-06 TTTGTATTTTTAGTAT 16 V_IRX2_01_M01405 TRANSFAC - 42637270 42637286 0.0E+00 TATTTACATGTATTTTA 17 V_IRX2_01_M01405 TRANSFAC + 42637271 42637287 0.0E+00 AAAATACATGTAAATAG 17 V_LXRA_RXRA_Q3_M00647 TRANSFAC - 42632909 42632923 8.0E-06 CACGAGGTCAGGAGT 15 V_SRF_06_M02916 TRANSFAC + 42631956 42631972 8.0E-06 ACTAATACAAAAAATTA 17 V_SRF_06_M02916 TRANSFAC + 42632073 42632089 6.0E-06 ATCTCAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 42632074 42632090 0.0E+00 TCTCAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 42632075 42632091 1.0E-06 CTCAAAAAAAAAAAAAG 17 V_SRF_06_M02916 TRANSFAC + 42632076 42632092 1.0E-06 TCAAAAAAAAAAAAAGC 17 V_SRF_06_M02916 TRANSFAC + 42632077 42632093 0.0E+00 CAAAAAAAAAAAAAGCA 17 V_SRF_06_M02916 TRANSFAC + 42632078 42632094 1.0E-06 AAAAAAAAAAAAAGCAT 17 V_FOXJ2_01_M00422 TRANSFAC + 42633542 42633559 5.0E-06 ACAAAGACAAACAAAGGA 18 V_FOXJ2_01_M00422 TRANSFAC + 42637274 42637291 8.0E-06 ATACATGTAAATAGTGAA 18 V_SOX4_01_M01308 TRANSFAC + 42633551 42633558 1.0E-05 AACAAAGG 8 V_SOX1_03_M02802 TRANSFAC + 42631955 42631970 5.0E-06 TACTAATACAAAAAAT 16 V_SOX1_03_M02802 TRANSFAC - 42632856 42632871 6.0E-06 TAAAAATACAAAAATT 16 V_SOX2_Q6_M01272 TRANSFAC - 42633547 42633562 2.0E-06 AAATCCTTTGTTTGTC 16 V_PAX4_02_M00377 TRANSFAC + 42631964 42631974 9.0E-06 AAAAAATTAGA 11 V_GATA5_03_M02756 TRANSFAC + 42635275 42635291 1.0E-06 ATGTCTGATAAGGTGAT 17 V_IRXB3_01_M01377 TRANSFAC - 42637270 42637286 0.0E+00 TATTTACATGTATTTTA 17 V_IRXB3_01_M01377 TRANSFAC + 42637271 42637287 0.0E+00 AAAATACATGTAAATAG 17 V_TCF3_05_M02920 TRANSFAC + 42632074 42632088 4.0E-06 TCTCAAAAAAAAAAA 15 V_PAX4_04_M00380 TRANSFAC + 42632080 42632109 2.0E-06 AAAAAAAAAAAGCATGCACAGCCTAACACT 30 V_PAX4_04_M00380 TRANSFAC + 42632082 42632111 7.0E-06 AAAAAAAAAGCATGCACAGCCTAACACTGG 30 V_SOX9_Q4_M01284 TRANSFAC + 42633550 42633560 1.0E-06 AAACAAAGGAT 11 V_NANOG_02_M01247 TRANSFAC + 42633544 42633563 8.0E-06 AAAGACAAACAAAGGATTTA 20 V_NKX21_01_M01312 TRANSFAC + 42630109 42630124 4.0E-06 CAAGTCACTTAAACTT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.