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CCDC41 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 51134 coiled-coil domain containing 41 chr12 - 94853264 - 94858764 94853764 Transcription Factor Binding Sites   Download all TFBS in the CCDC41 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 94853235 94853247 3.0E-06 GAAAATAAAAAAA 13 SOX10_HMG_full_dimeric_16_1 SELEX - 94852892 94852907 7.0E-06 AAGAATATCCACTGCT 16 Tp53_p53l_DBD_dimeric_18_1 SELEX + 94852692 94852709 9.0E-06 ACTTGTTTACAGACATGT 18 Tp53_p53l_DBD_dimeric_18_1 SELEX - 94852692 94852709 0.0E+00 ACATGTCTGTAAACAAGT 18 NR4A2_nuclearreceptor_full_monomeric_11_1 SELEX + 94852680 94852690 4.0E-06 GTTAAATGTCA 11 EBF1_EBF_full_dimeric_14_1 SELEX + 94853543 94853556 6.0E-06 CGTCCCTAGGGAAA 14 EBF1_EBF_full_dimeric_14_1 SELEX - 94853543 94853556 7.0E-06 TTTCCCTAGGGACG 14 FOXL1_forkhead_full_dimeric_13_1 SELEX + 94853289 94853301 9.0E-06 AAAATACAAACAA 13 FOXO3_MA0157.1 JASPAR - 94852695 94852702 7.0E-06 TGTAAACA 8 FOXO3_MA0157.1 JASPAR + 94854393 94854400 7.0E-06 TGTAAACA 8 Mafb_bZIP_DBD_monomeric_12_1 SELEX + 94851277 94851288 5.0E-06 ATAATGCTGATT 12 EWSR1-FLI1_MA0149.1 JASPAR - 94854073 94854090 1.0E-06 GGGAAGAGGGAAGGAGAG 18 SOX9_HMG_DBD_monomeric_9_1 SELEX + 94854396 94854404 4.0E-06 AAACAATAG 9 FOXO1_forkhead_DBD_monomeric_8_1 SELEX + 94854394 94854401 7.0E-06 GTAAACAA 8 HOXD11_homeodomain_DBD_monomeric_10_1 SELEX + 94853082 94853091 8.0E-06 ATCGTAAATT 10 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 94854393 94854406 7.0E-06 AACTATTGTTTACA 14 SPIB_ETS_DBD_monomeric_14_1 SELEX - 94852851 94852864 3.0E-06 GAAATGAGGAAGCT 14 REL_MA0101.1 JASPAR + 94854051 94854060 9.0E-06 GGGGTTTTCC 10 RFX2_RFX_DBD_dimeric_15_1 SELEX - 94852707 94852721 4.0E-06 TGTTACCAAGCAACA 15 POU3F3_POU_DBD_monomeric_13_1 SELEX + 94851277 94851289 5.0E-06 ATAATGCTGATTT 13 Foxq1_MA0040.1 JASPAR - 94854393 94854403 5.0E-06 TATTGTTTACA 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 94853235 94853245 6.0E-06 GAAAATAAAAA 11 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX - 94851284 94851297 4.0E-06 GTAATCAGAAATCA 14 FOXO4_forkhead_DBD_putatively-multimeric_12_1 SELEX + 94854085 94854096 5.0E-06 CTTCCCCACACC 12 FOXI1_MA0042.1 JASPAR - 94853292 94853303 4.0E-06 TCTTGTTTGTAT 12 SRY_MA0084.1 JASPAR + 94854394 94854402 3.0E-06 GTAAACAAT 9 RFX3_RFX_DBD_dimeric_15_1 SELEX - 94852707 94852721 1.0E-06 TGTTACCAAGCAACA 15 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 94853235 94853245 4.0E-06 GAAAATAAAAA 11 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 94851287 94851307 6.0E-06 TTTCTGATTACTAAGGATTAT 21 NRL_bZIP_DBD_monomeric_11_1 SELEX + 94851277 94851287 8.0E-06 ATAATGCTGAT 11 NFIL3_bZIP_DBD_dimeric_12_1 SELEX + 94851271 94851282 1.0E-05 CATGACATAATG 12 RFX4_RFX_DBD_dimeric_15_1 SELEX - 94852707 94852721 1.0E-06 TGTTACCAAGCAACA 15 VENTX_homeodomain_DBD_dimeric_21_1 SELEX - 94852666 94852686 5.0E-06 ATTTAACTAAAACACAATTAA 21 MAFG_bZIP_full_dimeric_21_1 SELEX + 94851287 94851307 9.0E-06 TTTCTGATTACTAAGGATTAT 21 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX + 94854085 94854095 1.0E-06 CTTCCCCACAC 11 CPEB1_RRM_full_monomeric_8_1 SELEX + 94853238 94853245 4.0E-06 AATAAAAA 8 MAFK_bZIP_full_monomeric_12_1 SELEX + 94851276 94851287 1.0E-05 CATAATGCTGAT 12 SOX9_MA0077.1 JASPAR + 94854396 94854404 7.0E-06 AAACAATAG 9 SPI1_ETS_full_monomeric_14_1 SELEX - 94852851 94852864 3.0E-06 GAAATGAGGAAGCT 14 FOXB1_forkhead_full_monomeric_9_1 SELEX - 94852694 94852702 2.0E-06 TGTAAACAA 9 FOXB1_forkhead_full_monomeric_9_1 SELEX + 94854393 94854401 2.0E-06 TGTAAACAA 9 FOXO6_forkhead_DBD_putatively-multimeric_14_1 SELEX + 94854085 94854098 3.0E-06 CTTCCCCACACCAT 14 FOXO3_forkhead_full_monomeric_8_1 SELEX + 94854394 94854401 7.0E-06 GTAAACAA 8 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 94854085 94854096 3.0E-06 CTTCCCCACACC 12 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 94853233 94853245 2.0E-06 AGGAAAATAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 94853235 94853247 1.0E-06 GAAAATAAAAAAA 13 V_FOXP1_01_M00987 TRANSFAC - 94853282 94853301 1.0E-06 TTGTTTGTATTTTGGAATAC 20 V_CEBPG_Q6_M00622 TRANSFAC + 94851283 94851295 1.0E-05 CTGATTTCTGATT 13 V_HNF3B_01_M00131 TRANSFAC - 94853291 94853305 4.0E-06 TGTCTTGTTTGTATT 15 V_FREAC7_01_M00293 TRANSFAC + 94853289 94853304 3.0E-06 AAAATACAAACAAGAC 16 V_ZFP187_03_M02830 TRANSFAC - 94851257 94851270 1.0E-05 GGATGTTCTAATTC 14 V_GEN_INI_B_M00315 TRANSFAC + 94852856 94852863 1.0E-05 CCTCATTT 8 V_EBF_Q6_M00977 TRANSFAC + 94853544 94853554 2.0E-06 GTCCCTAGGGA 11 V_EBF_Q6_M00977 TRANSFAC - 94853545 94853555 1.0E-06 TTCCCTAGGGA 11 V_FOXO3_02_M02270 TRANSFAC - 94852695 94852702 7.0E-06 TGTAAACA 8 V_FOXO3_02_M02270 TRANSFAC + 94854393 94854400 7.0E-06 TGTAAACA 8 V_SOX14_05_M02902 TRANSFAC + 94854393 94854407 4.0E-06 TGTAAACAATAGTTG 15 V_MAFK_03_M02776 TRANSFAC + 94851275 94851289 1.0E-06 ACATAATGCTGATTT 15 V_HNF1_02_M01379 TRANSFAC - 94852674 94852690 6.0E-06 TGACATTTAACTAAAAC 17 V_HNF1_02_M01379 TRANSFAC + 94852861 94852877 2.0E-06 TTTCAGCTAACTAAAGG 17 V_HMGIY_Q3_M01010 TRANSFAC + 94852895 94852909 3.0E-06 AGTGGATATTCTTAA 15 V_ETS_B_M00340 TRANSFAC + 94853748 94853761 1.0E-05 AGCAGGAAGTCCCA 14 V_HOXA13_02_M01297 TRANSFAC + 94853237 94853245 4.0E-06 AAATAAAAA 9 V_SOX5_01_M00042 TRANSFAC + 94854395 94854404 2.0E-06 TAAACAATAG 10 V_CBF_02_M01080 TRANSFAC - 94853375 94853390 3.0E-06 AGAACTGCGGTCACTT 16 V_SRY_02_M00160 TRANSFAC + 94854394 94854405 0.0E+00 GTAAACAATAGT 12 V_NFAT3_Q3_M01734 TRANSFAC - 94853233 94853242 3.0E-06 TTATTTTCCT 10 V_CEBP_01_M00159 TRANSFAC - 94852953 94852965 7.0E-06 ACTTTGGTTAATC 13 V_FOXO3A_Q1_M01137 TRANSFAC - 94852691 94852702 3.0E-06 TGTAAACAAGTC 12 V_FOXO3A_Q1_M01137 TRANSFAC + 94854393 94854404 5.0E-06 TGTAAACAATAG 12 V_P53_DECAMER_Q2_M00761 TRANSFAC - 94852690 94852699 9.0E-06 AAACAAGTCT 10 V_P53_DECAMER_Q2_M00761 TRANSFAC + 94852808 94852817 1.0E-06 AGACAAGTCT 10 V_FOXJ1_03_M02750 TRANSFAC + 94854391 94854406 6.0E-06 GCTGTAAACAATAGTT 16 V_HFH4_01_M00742 TRANSFAC - 94852879 94852891 9.0E-06 AAGTATTTGTAAA 13 V_PITX2_Q6_M02114 TRANSFAC + 94852967 94852976 5.0E-06 TTTAAACCCA 10 V_NKX24_01_M01350 TRANSFAC + 94851247 94851262 3.0E-06 TAAGCTTCTTGAATTA 16 V_TCFAP2E_04_M02926 TRANSFAC + 94853230 94853243 4.0E-06 AACAGGAAAATAAA 14 V_P53_02_M00272 TRANSFAC - 94852808 94852817 4.0E-06 AGACTTGTCT 10 V_GEN_INI3_B_M00314 TRANSFAC + 94852856 94852863 1.0E-05 CCTCATTT 8 V_FOXA2_02_M02853 TRANSFAC + 94853235 94853249 1.0E-06 GAAAATAAAAAAAGG 15 V_FREAC3_01_M00291 TRANSFAC - 94852691 94852706 1.0E-05 TGTCTGTAAACAAGTC 16 V_OCT1_03_M00137 TRANSFAC - 94851288 94851300 6.0E-06 TTAGTAATCAGAA 13 V_FOXO1_02_M00474 TRANSFAC - 94854391 94854404 7.0E-06 CTATTGTTTACAGC 14 V_NFAT_Q6_M00302 TRANSFAC + 94853230 94853241 6.0E-06 AACAGGAAAATA 12 V_E2F1_Q6_01_M00940 TRANSFAC + 94854064 94854073 1.0E-06 TTTTCGCGCC 10 V_CREL_01_M00053 TRANSFAC + 94854051 94854060 9.0E-06 GGGGTTTTCC 10 V_RFX1_01_M00280 TRANSFAC + 94852706 94852722 1.0E-06 ATGTTGCTTGGTAACAG 17 V_RFX1_01_M00280 TRANSFAC - 94852706 94852722 0.0E+00 CTGTTACCAAGCAACAT 17 V_KROX_Q6_M00982 TRANSFAC + 94854298 94854311 1.0E-06 CTCGCCCCCGCACC 14 V_OLF1_01_M00261 TRANSFAC - 94853539 94853560 1.0E-06 CACATTTCCCTAGGGACGGGAG 22 V_HOXD12_01_M01380 TRANSFAC + 94853078 94853094 3.0E-06 TTTCATCGTAAATTAAG 17 V_HNF3_Q6_M00791 TRANSFAC + 94853290 94853302 6.0E-06 AAATACAAACAAG 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 94853290 94853300 3.0E-06 TGTTTGTATTT 11 V_HOXD11_01_M01434 TRANSFAC + 94853078 94853094 9.0E-06 TTTCATCGTAAATTAAG 17 V_NFE4_Q5_M02105 TRANSFAC + 94854019 94854030 9.0E-06 CTCCCTAGCCTC 12 V_PAX6_Q2_M00979 TRANSFAC - 94852678 94852691 4.0E-06 CTGACATTTAACTA 14 V_OCT1_04_M00138 TRANSFAC + 94853225 94853247 3.0E-06 ACTTTAACAGGAAAATAAAAAAA 23 V_HBP1_03_M02762 TRANSFAC - 94853028 94853043 2.0E-06 AATTTGAATGAACAGT 16 V_HOXC12_01_M01437 TRANSFAC + 94853078 94853094 6.0E-06 TTTCATCGTAAATTAAG 17 V_SOX12_04_M02900 TRANSFAC + 94853237 94853252 6.0E-06 AAATAAAAAAAGGATT 16 V_SPIB_01_M01204 TRANSFAC - 94852848 94852864 1.0E-06 GAAATGAGGAAGCTCTT 17 V_CRX_02_M01436 TRANSFAC + 94852946 94852961 8.0E-06 CACTGAGGATTAACCA 16 V_SOX9_B1_M00410 TRANSFAC + 94854393 94854406 4.0E-06 TGTAAACAATAGTT 14 V_ELK1_01_M00007 TRANSFAC + 94853746 94853761 2.0E-06 GAAGCAGGAAGTCCCA 16 V_TFIII_Q6_M00706 TRANSFAC + 94853816 94853824 6.0E-06 AGAGGGAGG 9 V_ELF1_Q6_M00746 TRANSFAC - 94854055 94854066 8.0E-06 AAAGGAGGAAAA 12 V_CREM_Q6_M01820 TRANSFAC + 94853772 94853782 1.0E-05 CGACGTCACCC 11 V_AML2_Q3_01_M01854 TRANSFAC + 94854090 94854100 1.0E-06 CCACACCATTT 11 V_ATF1_Q6_M00691 TRANSFAC - 94853043 94853053 8.0E-06 CTTTGAAGACA 11 V_MTF1_06_M02882 TRANSFAC + 94853237 94853250 5.0E-06 AAATAAAAAAAGGA 14 V_NCX_01_M00484 TRANSFAC - 94853117 94853126 1.0E-06 TGGTAATTGG 10 V_GEN_INI2_B_M00313 TRANSFAC + 94852856 94852863 1.0E-05 CCTCATTT 8 V_TCF1_06_M02815 TRANSFAC + 94852861 94852877 4.0E-06 TTTCAGCTAACTAAAGG 17 V_CREB_Q2_M00177 TRANSFAC + 94853661 94853672 9.0E-06 GCTGACGTATGG 12 V_PLZF_02_M01075 TRANSFAC - 94853214 94853242 1.0E-06 TTATTTTCCTGTTAAAGTAGTGGAAGCTC 29 V_BBX_03_M02739 TRANSFAC - 94853029 94853043 5.0E-06 AATTTGAATGAACAG 15 V_OCT1_07_M00248 TRANSFAC + 94853032 94853043 8.0E-06 TTCATTCAAATT 12 V_SRF_06_M02916 TRANSFAC + 94853234 94853250 9.0E-06 GGAAAATAAAAAAAGGA 17 V_SRF_06_M02916 TRANSFAC + 94853235 94853251 4.0E-06 GAAAATAAAAAAAGGAT 17 V_HFH3_01_M00289 TRANSFAC - 94853291 94853303 3.0E-06 TCTTGTTTGTATT 13 V_EWSR1FLI1_01_M02252 TRANSFAC - 94854073 94854090 1.0E-06 GGGAAGAGGGAAGGAGAG 18 V_FOXJ2_01_M00422 TRANSFAC + 94853288 94853305 8.0E-06 CAAAATACAAACAAGACA 18 V_SIX6_08_M02897 TRANSFAC - 94852780 94852796 4.0E-06 ATATGATATATACTTCA 17 V_PR_02_M00957 TRANSFAC - 94851256 94851282 5.0E-06 CATTATGTCATGGGATGTTCTAATTCA 27 V_CREB_02_M00113 TRANSFAC - 94853772 94853783 6.0E-06 TGGGTGACGTCG 12 V_SRY_05_M02917 TRANSFAC + 94854391 94854407 8.0E-06 GCTGTAAACAATAGTTG 17 V_FOXO4_01_M00472 TRANSFAC - 94852691 94852701 5.0E-06 GTAAACAAGTC 11 V_VMYB_02_M00227 TRANSFAC - 94853810 94853818 1.0E-05 TCTAACGGC 9 V_LTF_Q6_M01692 TRANSFAC + 94853967 94853975 6.0E-06 GGCACTTGC 9 V_TCF3_05_M02920 TRANSFAC + 94853231 94853245 2.0E-06 ACAGGAAAATAAAAA 15 V_TCF3_05_M02920 TRANSFAC + 94853233 94853247 3.0E-06 AGGAAAATAAAAAAA 15 V_MIF1_01_M00279 TRANSFAC + 94852706 94852723 2.0E-06 ATGTTGCTTGGTAACAGA 18 V_FOXK1_03_M02752 TRANSFAC + 94854389 94854405 5.0E-06 AGGCTGTAAACAATAGT 17 V_NKX21_01_M01312 TRANSFAC + 94851247 94851262 3.0E-06 TAAGCTTCTTGAATTA 16 V_TCF11_01_M00285 TRANSFAC + 94851312 94851324 6.0E-06 GTCATTCTTGATT 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.