Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

NMD3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 51068 NMD3 homolog (S. cerevisiae) chr3 + 160934098 - 160939598 160939098 Transcription Factor Binding Sites   Download all TFBS in the NMD3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 160935497 160935507 0.0E+00 AATGACTCATC 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 160935497 160935507 3.0E-06 GATGAGTCATT 11 HOXD12_homeodomain_DBD_monomeric_9_1 SELEX - 160943909 160943917 2.0E-06 CTAATAAAA 9 ESRRA_nuclearreceptor_DBD_dimeric_19_1 SELEX + 160939509 160939527 6.0E-06 CCAGGTGAGATGGAGGTCA 19 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 160938803 160938819 1.0E-05 TGATTAAATGATTATTT 17 EMX2_homeodomain_DBD_dimeric_14_1 SELEX - 160938806 160938819 7.0E-06 TGATTAAATGATTA 14 FOXL1_forkhead_full_dimeric_13_1 SELEX + 160938664 160938676 3.0E-06 TTTCAACAAATAA 13 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX + 160935369 160935380 1.0E-05 ACTTATCCCACA 12 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 160943942 160943955 8.0E-06 TCTAAACGTTTACT 14 Pax4_MA0068.1 JASPAR + 160940496 160940525 4.0E-06 AAATAAATTGGCTTCTTACCACAACTACCC 30 Barhl1_homeodomain_DBD_monomeric_10_1 SELEX - 160938808 160938817 7.0E-06 ATTAAATGAT 10 ESRRG_nuclearreceptor_full_dimeric_18_1 SELEX + 160939510 160939527 3.0E-06 CAGGTGAGATGGAGGTCA 18 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 160943942 160943955 4.0E-06 TCTAAACGTTTACT 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 160943942 160943955 9.0E-06 AGTAAACGTTTAGA 14 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX - 160943909 160943917 7.0E-06 CTAATAAAA 9 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX - 160943908 160943917 2.0E-06 CTAATAAAAC 10 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 160940572 160940585 6.0E-06 GAAAACAGTAACTA 14 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 160938803 160938817 7.0E-06 AAATAATCATTTAAT 15 Rarb_nuclearreceptor_DBD_dimeric_17_1 SELEX + 160939511 160939527 2.0E-06 AGGTGAGATGGAGGTCA 17 BARHL2_homeodomain_full_monomeric_10_1 SELEX - 160938808 160938817 5.0E-06 ATTAAATGAT 10 RARA_nuclearreceptor_full_dimeric_17_1 SELEX + 160939511 160939527 1.0E-06 AGGTGAGATGGAGGTCA 17 MAFK_bZIP_full_dimeric_15_1 SELEX + 160939280 160939294 7.0E-06 GTGCTCAGTCTGCGT 15 SOX14_HMG_DBD_dimeric_15_1 SELEX + 160938916 160938930 3.0E-06 CTGAAAAGCAGTCAC 15 HOXA13_homeodomain_full_monomeric_10_1 SELEX - 160943908 160943917 2.0E-06 CTAATAAAAC 10 FEV_MA0156.1 JASPAR + 160940655 160940662 1.0E-05 CAGGAAAT 8 Hltf_MA0109.1 JASPAR + 160938790 160938799 6.0E-06 TAACTTTTAT 10 JDP2_bZIP_full_dimeric_9_1 SELEX + 160935498 160935506 2.0E-06 ATGACTCAT 9 JDP2_bZIP_full_dimeric_9_1 SELEX - 160935498 160935506 4.0E-06 ATGAGTCAT 9 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX - 160943908 160943917 2.0E-06 CTAATAAAAC 10 RORA_nuclearreceptor_DBD_dimeric_20_1 SELEX + 160939508 160939527 2.0E-06 CCCAGGTGAGATGGAGGTCA 20 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 160938803 160938817 1.0E-05 AAATAATCATTTAAT 15 POU3F3_POU_DBD_dimeric_12_1 SELEX + 160938801 160938812 5.0E-06 TAAAATAATCAT 12 CDX2_homeodomain_DBD_monomeric_9_1 SELEX - 160943909 160943917 9.0E-06 CTAATAAAA 9 POU4F1_POU_DBD_monomeric_14_1 SELEX - 160938799 160938812 6.0E-06 ATGATTATTTTATA 14 HNF1A_MA0046.1 JASPAR - 160940571 160940584 6.0E-06 AGTTACTGTTTTCC 14 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX - 160943908 160943917 2.0E-06 CTAATAAAAC 10 IRF2_MA0051.1 JASPAR + 160940613 160940630 1.0E-05 TAAAAACCAAAGGAAAAA 18 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 160940572 160940585 2.0E-06 GAAAACAGTAACTA 14 V_RUSH1A_02_M01107 TRANSFAC + 160938790 160938799 6.0E-06 TAACTTTTAT 10 V_FOXP1_01_M00987 TRANSFAC + 160939758 160939777 1.0E-06 TTTTTTTTTTTTTTTTTTTA 20 V_FOXP1_01_M00987 TRANSFAC + 160939759 160939778 1.0E-06 TTTTTTTTTTTTTTTTTTAA 20 V_FOXP1_01_M00987 TRANSFAC - 160940614 160940633 6.0E-06 CTATTTTTCCTTTGGTTTTT 20 RXR_RAR_DR5_MA0159.1 JASPAR + 160939511 160939527 1.0E-06 AGGTGAGATGGAGGTCA 17 V_DBX1_01_M01483 TRANSFAC - 160938799 160938815 9.0E-06 TAAATGATTATTTTATA 17 V_DBX1_01_M01483 TRANSFAC + 160938806 160938822 3.0E-06 TAATCATTTAATCAAGA 17 V_DBX1_01_M01483 TRANSFAC - 160939761 160939777 6.0E-06 TAAAAAAAAAAAAAAAA 17 V_POU3F3_01_M03090 TRANSFAC + 160938762 160938778 4.0E-06 TTTCTTTGCATAAGGTA 17 V_ATF5_01_M01295 TRANSFAC + 160939858 160939868 3.0E-06 CTTCTTCCTTC 11 V_EVI1_04_M00081 TRANSFAC - 160939763 160939777 8.0E-06 TAAAAAAAAAAAAAA 15 V_NKX29_01_M01352 TRANSFAC - 160935360 160935376 2.0E-06 GGATAAGTACTTCATTC 17 V_STAT_Q6_M00777 TRANSFAC + 160935420 160935432 6.0E-06 TCTACTTCTGGGA 13 V_OCT1_Q5_01_M00930 TRANSFAC + 160938763 160938773 5.0E-06 TTCTTTGCATA 11 V_OCTAMER_01_M01324 TRANSFAC + 160938762 160938778 4.0E-06 TTTCTTTGCATAAGGTA 17 V_NFAT3_Q3_M01734 TRANSFAC - 160940623 160940632 4.0E-06 TATTTTTCCT 10 V_GLI1_01_M01702 TRANSFAC - 160939349 160939359 4.0E-06 GGCCACCCACG 11 V_GABPA_04_M02858 TRANSFAC + 160939861 160939876 6.0E-06 CTTCCTTCCCCCTTAA 16 V_GATA_C_M00203 TRANSFAC - 160935366 160935376 8.0E-06 GGATAAGTACT 11 V_OCT_C_M00210 TRANSFAC + 160938762 160938774 3.0E-06 TTTCTTTGCATAA 13 V_LHX3A_01_M00510 TRANSFAC + 160938811 160938820 8.0E-06 ATTTAATCAA 10 V_HOXD13_01_M01404 TRANSFAC - 160943905 160943920 1.0E-06 CACCTAATAAAACCCT 16 V_SOX21_03_M02803 TRANSFAC - 160938798 160938813 4.0E-06 AATGATTATTTTATAT 16 V_TCFAP2E_04_M02926 TRANSFAC - 160939764 160939777 0.0E+00 TAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 160939765 160939778 1.0E-06 TTAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 160939766 160939779 4.0E-06 TTTAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 160939767 160939780 2.0E-06 TTTTAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 160939768 160939781 6.0E-06 CTTTTAAAAAAAAA 14 V_AP1_Q6_M00174 TRANSFAC + 160935497 160935507 5.0E-06 AATGACTCATC 11 V_RPC155_01_M01798 TRANSFAC + 160939204 160939219 1.0E-06 TCCGGAGTCCGAGACC 16 V_ELF4_04_M02850 TRANSFAC + 160938794 160938810 2.0E-06 TTTTATATAAAATAATC 17 V_ELF4_04_M02850 TRANSFAC - 160939761 160939777 4.0E-06 TAAAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 160939762 160939778 1.0E-06 TTAAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 160939763 160939779 0.0E+00 TTTAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 160939764 160939780 0.0E+00 TTTTAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 160939765 160939781 0.0E+00 CTTTTAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 160939766 160939782 2.0E-06 TCTTTTAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 160939768 160939784 6.0E-06 GTTCTTTTAAAAAAAAA 17 V_BACH1_01_M00495 TRANSFAC - 160935495 160935509 4.0E-06 TCGATGAGTCATTGG 15 V_GLI3_02_M01704 TRANSFAC - 160939349 160939359 9.0E-06 GGCCACCCACG 11 V_HELIOSA_02_M01004 TRANSFAC + 160940620 160940630 1.0E-05 CAAAGGAAAAA 11 V_ZFP105_03_M02827 TRANSFAC - 160939763 160939777 0.0E+00 TAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 160939764 160939778 0.0E+00 TTAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 160939765 160939779 0.0E+00 TTTAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 160939766 160939780 3.0E-06 TTTTAAAAAAAAAAA 15 V_HOXB13_01_M01467 TRANSFAC - 160943905 160943920 2.0E-06 CACCTAATAAAACCCT 16 V_HNF1_Q6_M00790 TRANSFAC - 160940568 160940585 1.0E-06 TAGTTACTGTTTTCCTGT 18 V_NFAT_Q6_M00302 TRANSFAC + 160940620 160940631 0.0E+00 CAAAGGAAAAAT 12 V_POLY_C_M00212 TRANSFAC - 160943899 160943916 5.0E-06 TAATAAAACCCTTCATTC 18 V_PAX9_B_M00329 TRANSFAC + 160935498 160935521 4.0E-06 ATGACTCATCGATGAGCAAAGTCC 24 V_CEBPD_Q6_M00621 TRANSFAC + 160943886 160943897 8.0E-06 AATTTCCTCATC 12 V_AP1_Q6_01_M00925 TRANSFAC + 160935498 160935506 4.0E-06 ATGACTCAT 9 V_IRF3_Q3_M01279 TRANSFAC - 160940609 160940621 5.0E-06 TGGTTTTTACTTT 13 V_IRF3_Q3_M01279 TRANSFAC - 160940621 160940633 1.0E-06 CTATTTTTCCTTT 13 V_HNF3_Q6_M00791 TRANSFAC + 160938665 160938677 8.0E-06 TTCAACAAATAAT 13 V_HNF1_Q6_01_M01011 TRANSFAC + 160940567 160940587 5.0E-06 CACAGGAAAACAGTAACTATG 21 V_EGR1_04_M02848 TRANSFAC - 160935515 160935530 9.0E-06 TCCCGAGGGGGACTTT 16 V_ELF5_01_M01197 TRANSFAC - 160943886 160943896 6.0E-06 ATGAGGAAATT 11 V_JUNDM2_04_M02876 TRANSFAC - 160935495 160935510 5.0E-06 ATCGATGAGTCATTGG 16 V_OCT1_04_M00138 TRANSFAC + 160938790 160938812 2.0E-06 TAACTTTTATATAAAATAATCAT 23 V_OCT1_08_M01354 TRANSFAC + 160938800 160938815 8.0E-06 ATAAAATAATCATTTA 16 V_MEF2_04_M00233 TRANSFAC + 160940599 160940620 7.0E-06 TTTGTGGCCAAAAGTAAAAACC 22 V_AP1_C_M00199 TRANSFAC - 160935498 160935506 8.0E-06 ATGAGTCAT 9 V_NCX_02_M01420 TRANSFAC - 160938799 160938815 8.0E-06 TAAATGATTATTTTATA 17 V_NCX_02_M01420 TRANSFAC + 160938806 160938822 3.0E-06 TAATCATTTAATCAAGA 17 V_ARID3A_04_M02735 TRANSFAC + 160938792 160938808 1.0E-05 ACTTTTATATAAAATAA 17 V_ARID3A_04_M02735 TRANSFAC - 160938808 160938824 7.0E-06 CTTCTTGATTAAATGAT 17 V_AP1_01_M00517 TRANSFAC + 160935496 160935508 6.0E-06 CAATGACTCATCG 13 V_TBP_06_M02814 TRANSFAC + 160938791 160938806 3.0E-06 AACTTTTATATAAAAT 16 V_TBP_06_M02814 TRANSFAC - 160938791 160938806 1.0E-06 ATTTTATATAAAAGTT 16 V_TBP_06_M02814 TRANSFAC + 160938793 160938808 0.0E+00 CTTTTATATAAAATAA 16 V_TBP_06_M02814 TRANSFAC - 160938793 160938808 0.0E+00 TTATTTTATATAAAAG 16 V_TBP_06_M02814 TRANSFAC + 160938795 160938810 1.0E-06 TTTATATAAAATAATC 16 V_TBP_06_M02814 TRANSFAC + 160939768 160939783 8.0E-06 TTTTTTTTTAAAAGAA 16 V_TBP_06_M02814 TRANSFAC - 160939768 160939783 3.0E-06 TTCTTTTAAAAAAAAA 16 V_OCT1_B_M00342 TRANSFAC - 160938764 160938773 6.0E-06 TATGCAAAGA 10 V_ISGF4G_04_M02875 TRANSFAC + 160940571 160940584 3.0E-06 GGAAAACAGTAACT 14 V_OCT_Q6_M00795 TRANSFAC + 160938763 160938773 4.0E-06 TTCTTTGCATA 11 V_NKX23_01_M01457 TRANSFAC - 160943987 160944002 8.0E-06 CCTCAAGTGCTTGGAT 16 V_GLI3_01_M01596 TRANSFAC + 160939350 160939360 7.0E-06 GTGGGTGGCCC 11 V_GLI3_01_M01596 TRANSFAC + 160939537 160939547 5.0E-06 CTGGGTGGCCC 11 V_ELF1_Q6_M00746 TRANSFAC + 160940651 160940662 9.0E-06 AAAGCAGGAAAT 12 V_AP1_Q4_01_M00926 TRANSFAC - 160935498 160935505 1.0E-05 TGAGTCAT 8 V_MTF1_06_M02882 TRANSFAC - 160939764 160939777 4.0E-06 TAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 160939767 160939780 2.0E-06 TTTTAAAAAAAAAA 14 V_TTF1_Q5_M02034 TRANSFAC + 160943991 160944004 2.0E-06 AAGCACTTGAGGAG 14 V_GLI2_01_M01703 TRANSFAC - 160939349 160939359 1.0E-05 GGCCACCCACG 11 V_OSR2_04_M02889 TRANSFAC - 160938682 160938697 6.0E-06 ACATGCTAACTGCTCA 16 V_BARHL1_01_M01332 TRANSFAC + 160938804 160938819 2.0E-06 AATAATCATTTAATCA 16 V_NKX3A_02_M01383 TRANSFAC - 160935360 160935376 3.0E-06 GGATAAGTACTTCATTC 17 V_TCF7_04_M02921 TRANSFAC + 160938793 160938807 9.0E-06 CTTTTATATAAAATA 15 V_NKX22_01_M00485 TRANSFAC - 160935365 160935374 3.0E-06 ATAAGTACTT 10 V_NKX22_01_M00485 TRANSFAC - 160943991 160944000 6.0E-06 TCAAGTGCTT 10 V_FRA1_Q5_M01267 TRANSFAC - 160935498 160935505 1.0E-05 TGAGTCAT 8 V_NRF2_Q4_M00821 TRANSFAC - 160935497 160935509 9.0E-06 TCGATGAGTCATT 13 V_PITX2_Q2_M00482 TRANSFAC + 160943983 160943993 3.0E-06 TGTAATCCAAG 11 V_FOX_Q2_M00809 TRANSFAC - 160938666 160938678 2.0E-06 GATTATTTGTTGA 13 V_RXR_RAR_01_M02272 TRANSFAC + 160939511 160939527 1.0E-06 AGGTGAGATGGAGGTCA 17 V_SRF_06_M02916 TRANSFAC - 160939761 160939777 0.0E+00 TAAAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 160939762 160939778 0.0E+00 TTAAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 160939763 160939779 0.0E+00 TTTAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 160939764 160939780 0.0E+00 TTTTAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 160939765 160939781 0.0E+00 CTTTTAAAAAAAAAAAA 17 V_HFH3_01_M00289 TRANSFAC - 160938666 160938678 8.0E-06 GATTATTTGTTGA 13 V_FOXJ2_01_M00422 TRANSFAC + 160938663 160938680 1.0E-06 CTTTCAACAAATAATCAT 18 V_HOXD8_01_M01432 TRANSFAC - 160938799 160938815 7.0E-06 TAAATGATTATTTTATA 17 V_NFE2_01_M00037 TRANSFAC - 160935498 160935508 1.0E-05 CGATGAGTCAT 11 V_IRF1_01_M00062 TRANSFAC + 160940607 160940619 2.0E-06 CAAAAGTAAAAAC 13 V_BARHL2_01_M01446 TRANSFAC + 160938804 160938819 3.0E-06 AATAATCATTTAATCA 16 V_MEF2_01_M00006 TRANSFAC + 160938781 160938796 3.0E-06 GTTTACAGATAACTTT 16 V_ARP1_01_M00155 TRANSFAC + 160938941 160938956 3.0E-06 TGAGCCCCTGGGACTT 16 V_HMEF2_Q6_M00406 TRANSFAC + 160938781 160938796 9.0E-06 GTTTACAGATAACTTT 16 V_HNF1A_01_M02162 TRANSFAC - 160940571 160940584 6.0E-06 AGTTACTGTTTTCC 14 V_RNF96_01_M01199 TRANSFAC - 160939229 160939238 7.0E-06 GCCCGCGGCC 10 V_FEV_01_M02269 TRANSFAC + 160940655 160940662 1.0E-05 CAGGAAAT 8 V_PAX4_04_M00380 TRANSFAC + 160940497 160940526 2.0E-06 AATAAATTGGCTTCTTACCACAACTACCCT 30 V_DMRT5_01_M01150 TRANSFAC - 160940573 160940587 8.0E-06 CATAGTTACTGTTTT 15 V_NANOG_02_M01247 TRANSFAC - 160939758 160939777 1.0E-06 TAAAAAAAAAAAAAAAAAAA 20 V_NANOG_02_M01247 TRANSFAC - 160939759 160939778 0.0E+00 TTAAAAAAAAAAAAAAAAAA 20 V_NANOG_02_M01247 TRANSFAC - 160939760 160939779 0.0E+00 TTTAAAAAAAAAAAAAAAAA 20 V_NANOG_02_M01247 TRANSFAC - 160939761 160939780 1.0E-06 TTTTAAAAAAAAAAAAAAAA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.