Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CALHM2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 51063 calcium homeostasis modulator 2 chr10 - 105211662 - 105217162 105212162 Transcription Factor Binding Sites   Download all TFBS in the CALHM2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX - 105217116 105217135 8.0E-06 ATGACCTTGGTGAATGTCAT 20 VSX1_homeodomain_full_monomeric_11_1 SELEX - 105211573 105211583 4.0E-06 AGCTAATTAGG 11 TBX1_TBX_DBD_dimeric_20_2 SELEX + 105208549 105208568 2.0E-06 TTAACACTTGCAGCTGAGAT 20 TBX1_TBX_DBD_dimeric_20_2 SELEX - 105208549 105208568 5.0E-06 ATCTCAGCTGCAAGTGTTAA 20 Tp53_p53l_DBD_dimeric_18_1 SELEX - 105208504 105208521 4.0E-06 ACAGGAAGGAGAACAAGT 18 EN2_homeodomain_full_monomeric_10_1 SELEX + 105211573 105211582 2.0E-06 CCTAATTAGC 10 Zfp652_C2H2_DBD_monomeric_13_1 SELEX + 105211514 105211526 1.0E-06 AGAATGGGTTAAA 13 Lhx8_homeodomain_DBD_dimeric_12_1 SELEX + 105208844 105208855 0.0E+00 TGATTGCAATTA 12 Lhx8_homeodomain_DBD_dimeric_12_1 SELEX - 105208844 105208855 0.0E+00 TAATTGCAATCA 12 Esrrb_MA0141.1 JASPAR + 105217123 105217134 1.0E-05 TCACCAAGGTCA 12 EBF1_MA0154.1 JASPAR + 105208690 105208699 1.0E-06 ACCCAAGGGA 10 Pax4_MA0068.1 JASPAR + 105208483 105208512 9.0E-06 AAAAAAAAGAAAAAAAAGAAAACTTGTTCT 30 Klf4_MA0039.2 JASPAR + 105211134 105211143 3.0E-06 AGGGTGTGGC 10 TEAD1_TEA_full_monomeric_10_1 SELEX - 105208760 105208769 5.0E-06 CACATTCCTA 10 LEF1_HMG_DBD_monomeric_15_1 SELEX - 105208880 105208894 7.0E-06 AAACATTAAAGGAAC 15 IRF1_MA0050.1 JASPAR + 105211170 105211181 7.0E-06 AAAAACAAAACT 12 Tcfcp2l1_MA0145.1 JASPAR + 105208860 105208873 6.0E-06 CCAGACTGAGCCAG 14 EMX1_homeodomain_DBD_monomeric_10_1 SELEX + 105211573 105211582 5.0E-06 CCTAATTAGC 10 NOTO_homeodomain_DBD_monomeric_10_1 SELEX + 105211573 105211582 7.0E-06 CCTAATTAGC 10 NFATC1_NFAT_full_dimeric_20_1 SELEX - 105211483 105211502 6.0E-06 GATGCAAACTGCCTTTCCCA 20 NFATC1_NFAT_full_dimeric_20_1 SELEX + 105212124 105212143 9.0E-06 AGTGGAAAAACAGCCTCCCG 20 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX + 105217126 105217135 4.0E-06 CCAAGGTCAT 10 Tcf7_HMG_DBD_monomeric_12_1 SELEX - 105208883 105208894 2.0E-06 AAACATTAAAGG 12 EN1_homeodomain_DBD_monomeric_10_1 SELEX + 105211573 105211582 5.0E-06 CCTAATTAGC 10 PRDM4_C2H2_full_monomeric_13_1 SELEX + 105212401 105212413 5.0E-06 TTTCAAGAGCACC 13 Gata1_MA0035.2 JASPAR - 105208834 105208844 1.0E-05 ACAGATAAGCC 11 PAX4_PAX_full_monomeric_8_1 SELEX + 105211574 105211581 7.0E-06 CTAATTAG 8 PAX4_PAX_full_monomeric_8_1 SELEX - 105211574 105211581 7.0E-06 CTAATTAG 8 GBX1_homeodomain_DBD_monomeric_10_1 SELEX + 105211573 105211582 4.0E-06 CCTAATTAGC 10 LHX2_homeodomain_DBD_monomeric_10_1 SELEX + 105211573 105211582 9.0E-06 CCTAATTAGC 10 LHX2_homeodomain_DBD_monomeric_10_1 SELEX - 105211573 105211582 8.0E-06 GCTAATTAGG 10 HNF1B_homeodomain_full_dimeric_13_1 SELEX - 105208885 105208897 1.0E-05 TTTAAACATTAAA 13 POU6F2_POU_full_monomeric_10_1 SELEX - 105211573 105211582 7.0E-06 GCTAATTAGG 10 Myf_MA0055.1 JASPAR - 105212222 105212233 2.0E-06 CAGCAGCTGCAG 12 FOXI1_forkhead_full_dimeric_17_1 SELEX + 105208921 105208937 3.0E-06 AGATTTACAGTAAAAAA 17 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX + 105217126 105217136 3.0E-06 CCAAGGTCATC 11 LHX6_homeodomain_full_dimeric_12_1 SELEX + 105208844 105208855 0.0E+00 TGATTGCAATTA 12 LHX6_homeodomain_full_dimeric_12_1 SELEX - 105208844 105208855 0.0E+00 TAATTGCAATCA 12 Lhx8_homeodomain_DBD_monomeric_8_1 SELEX + 105211574 105211581 7.0E-06 CTAATTAG 8 Lhx8_homeodomain_DBD_monomeric_8_1 SELEX - 105211574 105211581 7.0E-06 CTAATTAG 8 TEAD4_TEA_DBD_monomeric_10_1 SELEX - 105208760 105208769 9.0E-06 CACATTCCTA 10 EMX2_homeodomain_DBD_monomeric_10_1 SELEX + 105211573 105211582 9.0E-06 CCTAATTAGC 10 EMX2_homeodomain_DBD_monomeric_10_1 SELEX - 105211573 105211582 5.0E-06 GCTAATTAGG 10 EN1_homeodomain_full_monomeric_8_1 SELEX + 105211574 105211581 7.0E-06 CTAATTAG 8 EN1_homeodomain_full_monomeric_8_1 SELEX - 105211574 105211581 7.0E-06 CTAATTAG 8 LHX6_homeodomain_full_monomeric_10_1 SELEX + 105211573 105211582 8.0E-06 CCTAATTAGC 10 V_NFAT_Q4_01_M00935 TRANSFAC + 105212125 105212134 9.0E-06 GTGGAAAAAC 10 V_FOXP1_01_M00987 TRANSFAC + 105208837 105208856 3.0E-06 TTATCTGTGATTGCAATTAA 20 V_HSF2_01_M00147 TRANSFAC - 105211001 105211010 5.0E-06 AGAATAATCT 10 V_AP1_Q2_M00173 TRANSFAC + 105208726 105208736 3.0E-06 GCTGACTCAGT 11 V_GAF_Q6_M01209 TRANSFAC - 105208759 105208769 5.0E-06 CACATTCCTAT 11 V_TCF3_01_M01594 TRANSFAC - 105211168 105211180 2.0E-06 GTTTTGTTTTTCA 13 V_LEF1_04_M02774 TRANSFAC + 105208879 105208895 9.0E-06 TGTTCCTTTAATGTTTA 17 V_EBF_Q6_M00977 TRANSFAC - 105208690 105208700 7.0E-06 GTCCCTTGGGT 11 V_OBOX1_01_M01450 TRANSFAC + 105208828 105208844 6.0E-06 GTAAGGGGCTTATCTGT 17 V_SPIB_02_M02041 TRANSFAC + 105212200 105212209 8.0E-06 AGAGGAAGTT 10 V_STAT_Q6_M00777 TRANSFAC - 105211355 105211367 1.0E-06 TCCTTTTCTTGGA 13 V_P50P50_Q3_M01223 TRANSFAC + 105208694 105208706 6.0E-06 AAGGGACTCCCCT 13 V_GABPA_04_M02858 TRANSFAC - 105212121 105212136 5.0E-06 CTGTTTTTCCACTCAC 16 V_GKLF_02_M01588 TRANSFAC - 105211132 105211143 7.0E-06 GCCACACCCTGG 12 V_COUPTF_Q6_M01036 TRANSFAC + 105208592 105208614 4.0E-06 TCCCTTGCCCTCTGTCCCTTGAC 23 V_PU1_Q4_M01172 TRANSFAC - 105211361 105211379 7.0E-06 TCCTCCAGCTTCTCCTTTT 19 V_K2B_01_M01348 TRANSFAC + 105208895 105208911 8.0E-06 AAAACTAATTTGGTCAT 17 V_TCFAP2E_04_M02926 TRANSFAC + 105208926 105208939 1.0E-06 TACAGTAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 105208927 105208940 6.0E-06 ACAGTAAAAAAAAA 14 V_TAL1_GATA1_01_M02243 TRANSFAC - 105208836 105208853 3.0E-06 ATTGCAATCACAGATAAG 18 V_AP1_Q6_M00174 TRANSFAC + 105208726 105208736 2.0E-06 GCTGACTCAGT 11 V_TCF3_04_M02816 TRANSFAC - 105208879 105208895 1.0E-06 TAAACATTAAAGGAACA 17 V_EN1_02_M01365 TRANSFAC - 105211571 105211586 7.0E-06 GGGAGCTAATTAGGAG 16 V_MYF_01_M01302 TRANSFAC - 105212222 105212233 2.0E-06 CAGCAGCTGCAG 12 V_SPI1_03_M02078 TRANSFAC + 105212200 105212209 2.0E-06 AGAGGAAGTT 10 V_GFI1_01_M00250 TRANSFAC - 105208910 105208933 8.0E-06 TTACTGTAAATCTCAGTTGTATAT 24 V_XFD3_01_M00269 TRANSFAC + 105208927 105208940 8.0E-06 ACAGTAAAAAAAAA 14 V_AP1_Q4_M00188 TRANSFAC + 105208726 105208736 7.0E-06 GCTGACTCAGT 11 V_IRF3_Q3_M01279 TRANSFAC + 105211546 105211558 4.0E-06 TCCTTTTCCCTTC 13 V_NKX25_02_M00241 TRANSFAC - 105208850 105208857 7.0E-06 CTTAATTG 8 V_PMX2A_01_M01444 TRANSFAC - 105211571 105211586 9.0E-06 GGGAGCTAATTAGGAG 16 V_HNF1_Q6_01_M01011 TRANSFAC + 105208926 105208946 5.0E-06 TACAGTAAAAAAAAAAATTGA 21 V_ASCL2_03_M02737 TRANSFAC + 105212220 105212236 7.0E-06 TTCTGCAGCTGCTGCGC 17 V_SFPI1_04_M02896 TRANSFAC - 105208879 105208892 6.0E-06 ACATTAAAGGAACA 14 Tal1_Gata1_MA0140.1 JASPAR - 105208836 105208853 3.0E-06 ATTGCAATCACAGATAAG 18 V_NFKAPPAB50_01_M00051 TRANSFAC - 105208696 105208705 8.0E-06 GGGGAGTCCC 10 V_GATA1_09_M02254 TRANSFAC - 105208834 105208844 1.0E-05 ACAGATAAGCC 11 V_BBX_04_M02843 TRANSFAC + 105208543 105208559 2.0E-06 TCTAAGTTAACACTTGC 17 V_TCF7_03_M02817 TRANSFAC - 105208879 105208895 0.0E+00 TAAACATTAAAGGAACA 17 V_EBF1_01_M02267 TRANSFAC + 105208690 105208699 1.0E-06 ACCCAAGGGA 10 V_PROP1_02_M01320 TRANSFAC - 105211569 105211585 9.0E-06 GGAGCTAATTAGGAGCC 17 V_STAT3_03_M01595 TRANSFAC + 105211042 105211057 6.0E-06 CCTGCCGGGAAGTGGC 16 V_GLI3_Q5_01_M01657 TRANSFAC + 105211645 105211653 6.0E-06 GTGGGTGGT 9 V_FOXO1_Q5_M01216 TRANSFAC + 105211170 105211178 1.0E-06 AAAAACAAA 9 V_NKX32_02_M01482 TRANSFAC - 105212778 105212794 9.0E-06 CTTGACCACTTTTAGAT 17 V_MAF_Q6_01_M00983 TRANSFAC - 105208669 105208679 2.0E-06 TGTTGAGTCAG 11 V_HOXD9_Q2_M01834 TRANSFAC - 105208885 105208894 5.0E-06 AAACATTAAA 10 V_SF1_Q6_01_M01132 TRANSFAC - 105217126 105217134 7.0E-06 TGACCTTGG 9 V_ZFP691_04_M02937 TRANSFAC - 105211425 105211441 4.0E-06 AATCAGACTCCTCCTCC 17 V_GATA4_Q3_M00632 TRANSFAC + 105212079 105212090 7.0E-06 AGAAAAGAGAGA 12 V_SP4_Q5_M01273 TRANSFAC - 105211772 105211782 7.0E-06 GCCCCTCCCCG 11 V_TAL1_01_M01591 TRANSFAC - 105212084 105212096 1.0E-06 TTTTCTTCTCTCT 13 V_E2F_Q6_01_M00920 TRANSFAC + 105211220 105211231 9.0E-06 TGAGCGCCAAAC 12 V_AP1FJ_Q2_M00172 TRANSFAC + 105208726 105208736 4.0E-06 GCTGACTCAGT 11 V_DR1_Q3_M00762 TRANSFAC - 105208604 105208616 7.0E-06 TGGTCAAGGGACA 13 V_FOXL1_02_M02857 TRANSFAC - 105208885 105208900 1.0E-05 AGTTTTAAACATTAAA 16 V_ERR2_01_M01589 TRANSFAC + 105217126 105217137 6.0E-06 CCAAGGTCATCT 12 V_IPF1_01_M01233 TRANSFAC - 105211574 105211583 4.0E-06 AGCTAATTAG 10 V_FPM315_01_M01587 TRANSFAC + 105211374 105211385 3.0E-06 GGAGGAGGAGGA 12 V_FPM315_01_M01587 TRANSFAC + 105211401 105211412 3.0E-06 GGAGGAGGAGGA 12 V_FPM315_01_M01587 TRANSFAC + 105211404 105211415 3.0E-06 GGAGGAGGAGGA 12 V_FPM315_01_M01587 TRANSFAC + 105211407 105211418 3.0E-06 GGAGGAGGAGGA 12 V_FPM315_01_M01587 TRANSFAC + 105211410 105211421 3.0E-06 GGAGGAGGAGGA 12 V_FPM315_01_M01587 TRANSFAC + 105211413 105211424 3.0E-06 GGAGGAGGAGGA 12 V_FPM315_01_M01587 TRANSFAC + 105211416 105211427 3.0E-06 GGAGGAGGAGGA 12 V_FPM315_01_M01587 TRANSFAC + 105211419 105211430 3.0E-06 GGAGGAGGAGGA 12 V_FPM315_01_M01587 TRANSFAC + 105211422 105211433 3.0E-06 GGAGGAGGAGGA 12 V_SPIC_02_M02077 TRANSFAC + 105212200 105212209 1.0E-06 AGAGGAAGTT 10 V_STAT1STAT1_Q3_M01212 TRANSFAC + 105208923 105208935 3.0E-06 ATTTACAGTAAAA 13 V_ESRRA_03_M02748 TRANSFAC + 105217123 105217139 2.0E-06 TCACCAAGGTCATCTGG 17 V_SREBP_Q3_M00776 TRANSFAC - 105211215 105211226 7.0E-06 GCGCTCACCCCA 12 V_CHX10_01_M00437 TRANSFAC + 105211572 105211585 5.0E-06 TCCTAATTAGCTCC 14 V_SRF_06_M02916 TRANSFAC + 105208927 105208943 3.0E-06 ACAGTAAAAAAAAAAAT 17 V_SRF_06_M02916 TRANSFAC + 105211166 105211182 5.0E-06 GGTGAAAAACAAAACTC 17 V_SRF_06_M02916 TRANSFAC + 105211167 105211183 5.0E-06 GTGAAAAACAAAACTCC 17 V_NFE2_Q6_M02104 TRANSFAC + 105208668 105208683 0.0E+00 CCTGACTCAACACTCC 16 V_EKLF_Q5_M01874 TRANSFAC - 105211133 105211142 2.0E-06 CCACACCCTG 10 V_ALX3_01_M01355 TRANSFAC + 105211570 105211586 9.0E-06 GCTCCTAATTAGCTCCC 17 V_IRF1_01_M00062 TRANSFAC + 105211169 105211181 2.0E-06 GAAAAACAAAACT 13 V_FOXO4_01_M00472 TRANSFAC + 105211170 105211180 1.0E-05 AAAAACAAAAC 11 V_OG2_02_M01441 TRANSFAC - 105211569 105211585 2.0E-06 GGAGCTAATTAGGAGCC 17 V_GFI1_Q6_01_M02010 TRANSFAC + 105208562 105208571 7.0E-06 CTGAGATTTT 10 V_SREBP1_Q5_M01173 TRANSFAC - 105211212 105211226 6.0E-06 GCGCTCACCCCATCC 15 V_ALX3_02_M02943 TRANSFAC + 105211570 105211586 9.0E-06 GCTCCTAATTAGCTCCC 17 V_TCF3_05_M02920 TRANSFAC + 105208927 105208941 2.0E-06 ACAGTAAAAAAAAAA 15 V_IPF1_03_M01235 TRANSFAC - 105211574 105211583 4.0E-06 AGCTAATTAG 10 V_STAT1_05_M01260 TRANSFAC + 105208922 105208943 5.0E-06 GATTTACAGTAAAAAAAAAAAT 22 V_PAX4_04_M00380 TRANSFAC + 105208484 105208513 6.0E-06 AAAAAAAGAAAAAAAAGAAAACTTGTTCTC 30 V_PAX4_04_M00380 TRANSFAC + 105208492 105208521 9.0E-06 AAAAAAAAGAAAACTTGTTCTCCTTCCTGT 30 V_SPI1_02_M02043 TRANSFAC + 105212200 105212209 6.0E-06 AGAGGAAGTT 10 V_SPIB_03_M02076 TRANSFAC + 105212200 105212209 2.0E-06 AGAGGAAGTT 10 V_ER_Q6_M00191 TRANSFAC - 105208706 105208724 6.0E-06 TCAAGTGTTGCTGACCTAA 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.