Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PCDHGC5 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 5098 protocadherin gamma subfamily C, 3 chr5 + 140850568 - 140856068 140855568 Transcription Factor Binding Sites   Download all TFBS in the PCDHGC5 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints RARB_nuclearreceptor_full_dimeric_16_1 SELEX - 140855985 140856000 8.0E-06 ACAGTGCAAGAGGGCA 16 NFIA_NFI_full_dimeric_15_1 SELEX - 140855353 140855367 5.0E-06 TTGGCTTCCTTCCAG 15 IRF7_IRF_DBD_dimeric_14_1 SELEX - 140855176 140855189 3.0E-06 ACCAAACCGAAAAC 14 Pax6_MA0069.1 JASPAR - 140858126 140858139 5.0E-06 GTCAAGCATGACTT 14 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 140859622 140859638 3.0E-06 ATCTTATAAAACACTTA 17 SRY_HMG_DBD_dimeric_13_2 SELEX - 140855213 140855225 8.0E-06 TGAATCACTTTCT 13 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 140855231 140855248 6.0E-06 CAAATCAAGACTCATTAA 18 POU5F1P1_POU_DBD_monomeric_9_1 SELEX + 140859604 140859612 8.0E-06 TATGCAAAA 9 POU2F3_POU_DBD_monomeric_9_1 SELEX + 140859604 140859612 8.0E-06 TATGCAAAA 9 TBX19_TBX_DBD_dimeric_20_1 SELEX + 140856371 140856390 7.0E-06 ATTCACATCAAGGTGCTGGA 20 TBX19_TBX_DBD_dimeric_20_1 SELEX - 140856371 140856390 7.0E-06 TCCAGCACCTTGATGTGAAT 20 SOX8_HMG_full_dimeric_17_1 SELEX - 140855207 140855223 9.0E-06 AATCACTTTCTTTGATC 17 NFIX_NFI_full_dimeric_15_2 SELEX + 140855353 140855367 7.0E-06 CTGGAAGGAAGCCAA 15 POU2F2_POU_DBD_monomeric_11_1 SELEX + 140859603 140859613 6.0E-06 ATATGCAAAAA 11 Pou2f2_POU_DBD_monomeric_9_1 SELEX + 140859604 140859612 7.0E-06 TATGCAAAA 9 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 140856514 140856527 2.0E-06 TGAAATTATTTACT 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 140856514 140856527 3.0E-06 TGAAATTATTTACT 14 E2F8_E2F_DBD_dimeric_12_1 SELEX - 140855339 140855350 7.0E-06 TTTCCAGCCAAA 12 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX - 140855231 140855248 3.0E-06 CAAATCAAGACTCATTAA 18 NFAT5_NFAT_DBD_dimeric_14_1 SELEX - 140855149 140855162 9.0E-06 CTGGAAAAACACCA 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 140856514 140856527 9.0E-06 TGAAATTATTTACT 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 140856514 140856527 5.0E-06 AGTAAATAATTTCA 14 NFATC1_NFAT_full_dimeric_20_1 SELEX + 140855366 140855385 6.0E-06 AAAGGAAAGTGAAGTTCCTG 20 Tcf7_HMG_DBD_monomeric_12_1 SELEX + 140858250 140858261 6.0E-06 CTAGATCAAAGT 12 GSX2_homeodomain_DBD_monomeric_10_1 SELEX - 140855230 140855239 4.0E-06 ACTCATTAAA 10 IRF9_IRF_full_trimeric_15_1 SELEX - 140855176 140855190 3.0E-06 AACCAAACCGAAAAC 15 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 140856514 140856527 2.0E-06 TGAAATTATTTACT 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 140856514 140856527 2.0E-06 AGTAAATAATTTCA 14 FEV_MA0156.1 JASPAR + 140856095 140856102 1.0E-05 CAGGAAAT 8 NFIB_NFI_full_dimeric_15_1 SELEX - 140855353 140855367 4.0E-06 TTGGCTTCCTTCCAG 15 POU2F1_POU_DBD_monomeric_12_1 SELEX + 140859602 140859613 8.0E-06 CATATGCAAAAA 12 IRF4_IRF_full_dimeric_15_1 SELEX - 140855175 140855189 4.0E-06 ACCAAACCGAAAACT 15 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 140855146 140855158 5.0E-06 AAAAACACCAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 140856065 140856077 9.0E-06 ATCAACGACAACA 13 HNF1A_MA0046.1 JASPAR - 140856514 140856527 4.0E-06 AGTAAATAATTTCA 14 V_HSF2_01_M00147 TRANSFAC - 140855903 140855912 4.0E-06 AGAATCTTCG 10 V_AREB6_01_M00412 TRANSFAC - 140858108 140858120 1.0E-05 ACCTTACCTGTCC 13 V_GEN_INI_B_M00315 TRANSFAC - 140859529 140859536 1.0E-05 CCTCATTT 8 V_LEF1_04_M02774 TRANSFAC - 140855203 140855219 3.0E-06 ACTTTCTTTGATCACAA 17 V_LEF1_04_M02774 TRANSFAC - 140857620 140857636 4.0E-06 ATTGTCTTTGATCAAGA 17 V_FOXA2_04_M02749 TRANSFAC - 140856515 140856531 6.0E-06 AAGGAGTAAATAATTTC 17 V_NF1_Q6_01_M00806 TRANSFAC - 140859514 140859530 1.0E-06 TTGACTAACTGCCAAAT 17 V_MYB_03_M02883 TRANSFAC - 140859514 140859529 0.0E+00 TGACTAACTGCCAAAT 16 V_HMGIY_Q3_M01010 TRANSFAC + 140854851 140854865 5.0E-06 TAGGGAAATTTCTTA 15 V_HMGIY_Q3_M01010 TRANSFAC + 140854852 140854866 7.0E-06 AGGGAAATTTCTTAT 15 V_TCF4_Q5_01_M02033 TRANSFAC + 140855208 140855217 2.0E-06 ATCAAAGAAA 10 V_ISL2_01_M01328 TRANSFAC - 140859618 140859633 8.0E-06 ATAAAACACTTATTAT 16 V_OCT1_01_M00135 TRANSFAC + 140859599 140859617 6.0E-06 CCTCATATGCAAAAAGGGA 19 V_FOXO3A_Q1_M01137 TRANSFAC - 140856516 140856527 6.0E-06 AGTAAATAATTT 12 V_GABPA_04_M02858 TRANSFAC - 140858312 140858327 7.0E-06 GTATCTTCCCCCTGAA 16 V_P50RELAP65_Q5_01_M01224 TRANSFAC - 140854851 140854862 6.0E-06 GAAATTTCCCTA 12 V_NKX61_03_M01489 TRANSFAC - 140851145 140851161 1.0E-05 AACTATCAATTACTTAC 17 V_AFP1_Q6_M00616 TRANSFAC - 140855434 140855444 2.0E-06 AATAACTGCAC 11 V_MYBL1_04_M02884 TRANSFAC - 140859515 140859529 4.0E-06 TGACTAACTGCCAAA 15 V_CDX_Q5_M00991 TRANSFAC + 140859617 140859634 5.0E-06 AATAATAAGTGTTTTATA 18 V_GEN_INI3_B_M00314 TRANSFAC - 140859529 140859536 1.0E-05 CCTCATTT 8 V_TCF3_04_M02816 TRANSFAC + 140855203 140855219 1.0E-06 TTGTGATCAAAGAAAGT 17 V_TCF3_04_M02816 TRANSFAC + 140857620 140857636 1.0E-06 TCTTGATCAAAGACAAT 17 V_TCF3_04_M02816 TRANSFAC + 140858249 140858265 6.0E-06 CCTAGATCAAAGTTAGT 17 V_SPI1_03_M02078 TRANSFAC + 140855662 140855671 1.0E-05 AGAGGAACTG 10 V_CART1_01_M00416 TRANSFAC + 140858343 140858360 7.0E-06 ACCTAATTCACATCCTCA 18 V_GFI1_01_M00250 TRANSFAC - 140855208 140855231 4.0E-06 AACATTTGAATCACTTTCTTTGAT 24 V_ZF5_B_M00333 TRANSFAC + 140856132 140856144 1.0E-06 CGGGGACGCGCTT 13 V_IRF_Q6_M00772 TRANSFAC - 140856097 140856111 2.0E-06 TCCAATTTCATTTCC 15 V_CDX2_Q5_M00729 TRANSFAC + 140854857 140854870 3.0E-06 AATTTCTTATTGCT 14 V_OBOX2_01_M01364 TRANSFAC + 140851066 140851082 5.0E-06 AGAGAGGGAGTAAAAAT 17 V_MEF2_04_M00233 TRANSFAC + 140851068 140851089 5.0E-06 AGAGGGAGTAAAAATAACAGCG 22 V_TCF7_03_M02817 TRANSFAC + 140855203 140855219 1.0E-06 TTGTGATCAAAGAAAGT 17 V_TCF7_03_M02817 TRANSFAC + 140857620 140857636 1.0E-06 TCTTGATCAAAGACAAT 17 V_MEF2_Q6_01_M00941 TRANSFAC - 140851075 140851086 3.0E-06 TGTTATTTTTAC 12 V_CDC5_01_M00478 TRANSFAC + 140851073 140851084 9.0E-06 GAGTAAAAATAA 12 V_NKX3A_01_M00451 TRANSFAC + 140859619 140859630 3.0E-06 TAATAAGTGTTT 12 V_VMYB_01_M00003 TRANSFAC - 140855435 140855444 8.0E-06 AATAACTGCA 10 V_NKX63_01_M01470 TRANSFAC - 140851145 140851161 5.0E-06 AACTATCAATTACTTAC 17 V_NKX63_01_M01470 TRANSFAC + 140855226 140855242 8.0E-06 AATGTTTAATGAGTCTT 17 V_OCT1_B_M00342 TRANSFAC + 140859604 140859613 5.0E-06 TATGCAAAAA 10 V_AP1_Q2_01_M00924 TRANSFAC + 140851120 140851131 8.0E-06 TGACTCAGGGGT 12 V_FOXM1_01_M00630 TRANSFAC - 140859574 140859582 4.0E-06 AGATTGAGT 9 V_HOXD9_Q2_M01834 TRANSFAC - 140855230 140855239 3.0E-06 ACTCATTAAA 10 V_ZFP691_04_M02937 TRANSFAC - 140855229 140855245 5.0E-06 ATCAAGACTCATTAAAC 17 V_ZFP691_04_M02937 TRANSFAC + 140858325 140858341 7.0E-06 TACTTGACTCATCTGTG 17 V_PTF1BETA_Q6_M00657 TRANSFAC - 140855615 140855628 0.0E+00 GAGAAACTTTCAGC 14 V_ELF1_Q6_M00746 TRANSFAC - 140859595 140859606 6.0E-06 ATATGAGGAAGA 12 V_ZFP105_04_M02931 TRANSFAC - 140856514 140856530 5.0E-06 AGGAGTAAATAATTTCA 17 V_HOXB7_01_M01396 TRANSFAC - 140856514 140856529 1.0E-05 GGAGTAAATAATTTCA 16 V_MINI19_B_M00323 TRANSFAC - 140855742 140855762 8.0E-06 TCAAGGCACCAAGCAGAAGCA 21 V_POU5F1_01_M01307 TRANSFAC + 140859604 140859613 2.0E-06 TATGCAAAAA 10 V_OBOX2_02_M03064 TRANSFAC + 140851066 140851082 5.0E-06 AGAGAGGGAGTAAAAAT 17 V_IPF1_05_M01255 TRANSFAC - 140855228 140855239 2.0E-06 ACTCATTAAACA 12 V_HNF1_01_M00132 TRANSFAC - 140856513 140856527 5.0E-06 AGTAAATAATTTCAC 15 V_LUN1_01_M00480 TRANSFAC + 140854870 140854886 6.0E-06 TCCCTGGTTCTTAAGAA 17 V_MYOGNF1_01_M00056 TRANSFAC + 140859504 140859532 1.0E-06 CAACTCTTGGATTTGGCAGTTAGTCAAAT 29 V_GFI1B_01_M01058 TRANSFAC + 140857562 140857573 4.0E-06 CAAATCAGTACT 12 V_GEN_INI2_B_M00313 TRANSFAC - 140859529 140859536 1.0E-05 CCTCATTT 8 V_NKX61_02_M01469 TRANSFAC - 140856512 140856527 3.0E-06 AGTAAATAATTTCACC 16 V_NKX22_01_M00485 TRANSFAC + 140859621 140859630 5.0E-06 ATAAGTGTTT 10 V_TITF1_Q3_M00432 TRANSFAC - 140858324 140858333 3.0E-06 AGTCAAGTAT 10 V_IRF1_Q6_01_M01881 TRANSFAC - 140856096 140856109 3.0E-06 CAATTTCATTTCCT 14 V_HNF1A_Q5_M02013 TRANSFAC - 140856517 140856527 5.0E-06 AGTAAATAATT 11 V_SMAD3_Q6_M00701 TRANSFAC + 140855121 140855129 3.0E-06 TGTCTGTCT 9 V_PR_02_M00957 TRANSFAC + 140858052 140858078 6.0E-06 GGAGCTGTGATCCGGTGTTCTATAGGC 27 V_HNF3B_Q6_M02014 TRANSFAC + 140856519 140856527 6.0E-06 TTATTTACT 9 V_LHX9_01_M01367 TRANSFAC - 140851144 140851160 6.0E-06 ACTATCAATTACTTACC 17 V_SOX15_04_M02903 TRANSFAC + 140856097 140856111 1.0E-06 GGAAATGAAATTGGA 15 V_CMAF_01_M01070 TRANSFAC + 140856316 140856334 3.0E-06 GTTAGTGCTGACGGCGTTG 19 V_GFI1_Q6_01_M02010 TRANSFAC - 140855632 140855641 3.0E-06 CTGAGATTTC 10 V_TAACC_B_M00331 TRANSFAC - 140859559 140859581 9.0E-06 GATTGAGTAACTTGGCCACAGAC 23 V_HNF1A_01_M02162 TRANSFAC - 140856514 140856527 4.0E-06 AGTAAATAATTTCA 14 V_BRF1_01_M01747 TRANSFAC + 140855186 140855198 1.0E-06 TGGTTCGATCCCC 13 V_FEV_01_M02269 TRANSFAC + 140856095 140856102 1.0E-05 CAGGAAAT 8 V_PAX6_01_M00097 TRANSFAC - 140858123 140858143 8.0E-06 CAGGGTCAAGCATGACTTGCT 21 V_NF1_Q6_M00193 TRANSFAC + 140859514 140859531 1.0E-06 ATTTGGCAGTTAGTCAAA 18

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.