Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PCCB Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 5096 propionyl CoA carboxylase, beta polypeptide chr3 + 135964166 - 135969666 135969166 Transcription Factor Binding Sites   Download all TFBS in the PCCB promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 135968903 135968920 8.0E-06 TTAATAAATGTTGGTTAA 18 POU4F2_POU_full_monomeric_16_1 SELEX + 135968899 135968914 5.0E-06 ATGCTTAATAAATGTT 16 HSFY2_HSF_DBD_dimer-of-dimers_15_1 SELEX + 135969323 135969337 8.0E-06 AACGAACGCATCGAA 15 HES5_bHLH_DBD_dimeric_12_1 SELEX + 135969976 135969987 4.0E-06 AGGCACGTGTCG 12 HES5_bHLH_DBD_dimeric_12_1 SELEX - 135969976 135969987 1.0E-06 CGACACGTGCCT 12 Zfp652_C2H2_DBD_monomeric_13_1 SELEX - 135969606 135969618 2.0E-06 CCCAAGGGTTAAA 13 IRX2_homeodomain_DBD_dimeric_12_1 SELEX + 135969866 135969877 6.0E-06 TAACATGAAATG 12 Foxj3_forkhead_DBD_putatively-multimeric_11_1 SELEX - 135970165 135970175 1.0E-05 ACGGACACACT 11 YY1_C2H2_full_monomeric_11_1 SELEX - 135969215 135969225 5.0E-06 GCCGCCATTTT 11 HEY2_bHLH_full_dimeric_10_1 SELEX + 135969977 135969986 7.0E-06 GGCACGTGTC 10 HEY2_bHLH_full_dimeric_10_1 SELEX - 135969977 135969986 3.0E-06 GACACGTGCC 10 TBX19_TBX_DBD_dimeric_20_1 SELEX - 135966842 135966861 8.0E-06 TTTAGAATGTATTTGTGAAA 20 POU1F1_POU_DBD_monomeric_14_1 SELEX - 135969697 135969710 8.0E-06 ATTATTAAAATGAC 14 NFIL3_MA0025.1 JASPAR + 135966998 135967008 4.0E-06 TTATGTAAGGA 11 Esrrb_MA0141.1 JASPAR + 135967377 135967388 9.0E-06 AATGCAAGGTCA 12 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 135968905 135968918 5.0E-06 AATAAATGTTGGTT 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 135968905 135968918 1.0E-05 AACCAACATTTATT 14 POU4F3_POU_DBD_monomeric_16_1 SELEX + 135968899 135968914 4.0E-06 ATGCTTAATAAATGTT 16 HMX3_homeodomain_DBD_monomeric_11_1 SELEX + 135969653 135969663 4.0E-06 AACACTTAACA 11 HES7_bHLH_DBD_dimeric_12_1 SELEX + 135969976 135969987 4.0E-06 AGGCACGTGTCG 12 HES7_bHLH_DBD_dimeric_12_1 SELEX - 135969976 135969987 3.0E-06 CGACACGTGCCT 12 HEY1_bHLH_DBD_dimeric_10_1 SELEX + 135969977 135969986 7.0E-06 GGCACGTGTC 10 HEY1_bHLH_DBD_dimeric_10_1 SELEX - 135969977 135969986 2.0E-06 GACACGTGCC 10 YY2_C2H2_full_monomeric_11_1 SELEX - 135969215 135969225 1.0E-06 GCCGCCATTTT 11 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX - 135969529 135969539 4.0E-06 TTCAAGGTGAA 11 PPARG_MA0066.1 JASPAR + 135967381 135967400 4.0E-06 CAAGGTCAAGAGTACCCATT 20 HMX2_homeodomain_DBD_monomeric_11_1 SELEX + 135969653 135969663 3.0E-06 AACACTTAACA 11 POU3F3_POU_DBD_dimeric_12_1 SELEX + 135968899 135968910 7.0E-06 ATGCTTAATAAA 12 POU3F3_POU_DBD_dimeric_12_1 SELEX - 135968899 135968910 8.0E-06 TTTATTAAGCAT 12 POU3F3_POU_DBD_dimeric_12_1 SELEX + 135969702 135969713 1.0E-06 TTTAATAATAAT 12 POU3F3_POU_DBD_dimeric_12_1 SELEX - 135969702 135969713 2.0E-06 ATTATTATTAAA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 135969167 135969178 1.0E-05 TACGCATGTGCT 12 POU4F1_POU_DBD_monomeric_14_1 SELEX + 135968899 135968912 3.0E-06 ATGCTTAATAAATG 14 Irx3_homeodomain_DBD_dimeric_12_1 SELEX + 135967075 135967086 5.0E-06 GAACATGAAAAA 12 HMX1_homeodomain_DBD_monomeric_11_1 SELEX + 135969653 135969663 8.0E-06 AACACTTAACA 11 IRX5_homeodomain_DBD_dimeric_12_1 SELEX + 135969866 135969877 4.0E-06 TAACATGAAATG 12 V_FOXP1_01_M00987 TRANSFAC + 135968548 135968567 4.0E-06 TTTTTTTTTTTTTTTTTTGA 20 V_E2A_Q6_01_M02088 TRANSFAC - 135969988 135970000 6.0E-06 GGCCACCTGCTTC 13 V_DBX1_01_M01483 TRANSFAC + 135969699 135969715 4.0E-06 CATTTTAATAATAATTC 17 V_FOXP3_Q4_M00992 TRANSFAC - 135967077 135967093 0.0E+00 GAAGAGTTTTTTCATGT 17 V_TCF3_01_M01594 TRANSFAC - 135967154 135967166 9.0E-06 ACTTTGTTGTGTT 13 V_CDX2_Q5_01_M01659 TRANSFAC + 135968903 135968913 7.0E-06 TTAATAAATGT 11 V_ATF5_01_M01295 TRANSFAC + 135969712 135969722 8.0E-06 ATTCTTCCTTC 11 V_SRY_07_M02813 TRANSFAC + 135969702 135969717 3.0E-06 TTTAATAATAATTCTT 16 V_SRY_07_M02813 TRANSFAC - 135969702 135969717 3.0E-06 AAGAATTATTATTAAA 16 V_YY1_02_M00069 TRANSFAC - 135969208 135969227 5.0E-06 CCGCCGCCATTTTTGCTGTG 20 V_STAT_Q6_M00777 TRANSFAC + 135969997 135970009 7.0E-06 GGCCTTTCTGGGA 13 V_HNF4ALPHA_Q6_M00638 TRANSFAC + 135966930 135966942 8.0E-06 CTGACCTTTGGCT 13 V_GCNF_Q3_M02009 TRANSFAC + 135967381 135967390 1.0E-06 CAAGGTCAAG 10 V_POU3F2_02_M00464 TRANSFAC - 135969657 135969666 9.0E-06 TTATGTTAAG 10 V_SOX11_04_M02899 TRANSFAC - 135969703 135969716 3.0E-06 AGAATTATTATTAA 14 V_HFH4_01_M00742 TRANSFAC - 135966967 135966979 4.0E-06 TTAAGATTGTTTA 13 V_TR4_Q2_M01725 TRANSFAC + 135966929 135966939 0.0E+00 CCTGACCTTTG 11 V_E2A_Q2_M00804 TRANSFAC - 135969985 135969998 3.0E-06 CCACCTGCTTCCGA 14 V_PU1_Q4_M01172 TRANSFAC + 135966467 135966485 3.0E-06 ACCTCCAACTTCCTCCTAC 19 V_PSX1_01_M01435 TRANSFAC - 135969674 135969690 9.0E-06 AGATTTAATAAGTTGCC 17 V_SOX21_03_M02803 TRANSFAC + 135969699 135969714 2.0E-06 CATTTTAATAATAATT 16 V_SOX21_03_M02803 TRANSFAC - 135969699 135969714 2.0E-06 AATTATTATTAAAATG 16 V_SOX21_03_M02803 TRANSFAC + 135969702 135969717 0.0E+00 TTTAATAATAATTCTT 16 V_SOX21_03_M02803 TRANSFAC - 135969702 135969717 0.0E+00 AAGAATTATTATTAAA 16 V_ZFP691_03_M02833 TRANSFAC + 135970539 135970555 6.0E-06 CTGTCAGTGCTCCTGTA 17 V_BRN2_01_M00145 TRANSFAC + 135968896 135968911 6.0E-06 ACAATGCTTAATAAAT 16 V_TCFAP2E_04_M02926 TRANSFAC + 135967076 135967089 7.0E-06 AACATGAAAAAACT 14 V_TCFAP2E_04_M02926 TRANSFAC - 135968554 135968567 3.0E-06 TCAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 135968555 135968568 2.0E-06 CTCAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 135968557 135968570 2.0E-06 GTCTCAAAAAAAAA 14 V_NKX62_Q2_M00489 TRANSFAC + 135969706 135969717 8.0E-06 ATAATAATTCTT 12 V_TAL1_GATA1_01_M02243 TRANSFAC + 135970095 135970112 0.0E+00 CTGGCCTTCAGAGATAAG 18 V_NRSE_B_M00325 TRANSFAC + 135969278 135969298 9.0E-06 CTCCGCGCCGCGGTCCGCAGC 21 V_RPC155_01_M01798 TRANSFAC - 135969065 135969080 3.0E-06 GTGAGAGTTCGAGACC 16 V_ELF4_04_M02850 TRANSFAC - 135968551 135968567 2.0E-06 TCAAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 135968552 135968568 3.0E-06 CTCAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 135968553 135968569 0.0E+00 TCTCAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 135968554 135968570 1.0E-06 GTCTCAAAAAAAAAAAA 17 V_TAL1_Q6_M00993 TRANSFAC + 135967331 135967340 8.0E-06 TCCATCTGCC 10 V_DBP_Q6_01_M01872 TRANSFAC + 135966998 135967005 5.0E-06 TTATGTAA 8 V_LMX1_01_M01409 TRANSFAC + 135969699 135969715 9.0E-06 CATTTTAATAATAATTC 17 V_ZFP105_03_M02827 TRANSFAC - 135968553 135968567 2.0E-06 TCAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 135968554 135968568 1.0E-06 CTCAAAAAAAAAAAA 15 V_OCT1_03_M00137 TRANSFAC + 135968923 135968935 6.0E-06 CTTATAATCATTT 13 V_HOXB13_01_M01467 TRANSFAC + 135969676 135969691 8.0E-06 CAACTTATTAAATCTC 16 V_GFI1_01_M00250 TRANSFAC + 135969678 135969701 2.0E-06 ACTTATTAAATCTCTGTGGGTCAT 24 V_STAF_01_M00262 TRANSFAC - 135967010 135967031 1.0E-05 TTGTCCCACAGTGCCTTGTAGG 22 V_POLY_C_M00212 TRANSFAC - 135969691 135969708 8.0E-06 TATTAAAATGACCCACAG 18 V_RSRFC4_Q2_M00407 TRANSFAC + 135969700 135969716 1.0E-06 ATTTTAATAATAATTCT 17 V_PAX4_05_M01385 TRANSFAC + 135970205 135970221 5.0E-06 TGAACGAATTAACCAAC 17 V_SOX18_03_M02801 TRANSFAC - 135969702 135969717 5.0E-06 AAGAATTATTATTAAA 16 V_YY1_Q6_02_M01035 TRANSFAC - 135969215 135969225 0.0E+00 GCCGCCATTTT 11 V_REX1_03_M01744 TRANSFAC + 135969215 135969226 1.0E-06 AAAATGGCGGCG 12 Tal1_Gata1_MA0140.1 JASPAR + 135970095 135970112 0.0E+00 CTGGCCTTCAGAGATAAG 18 V_DAX1_01_M01248 TRANSFAC + 135967375 135967394 3.0E-06 CAAATGCAAGGTCAAGAGTA 20 V_BBX_04_M02843 TRANSFAC - 135969314 135969330 3.0E-06 CGTTCGTTAACAGAGGT 17 V_HNF4_DR1_Q3_M00764 TRANSFAC + 135966931 135966943 5.0E-06 TGACCTTTGGCTG 13 V_ARID3A_04_M02735 TRANSFAC + 135969699 135969715 3.0E-06 CATTTTAATAATAATTC 17 V_PAX3_01_M00360 TRANSFAC - 135968942 135968954 7.0E-06 TCGTCCCACTTCC 13 V_NR1B1_Q6_M02110 TRANSFAC - 135966929 135966938 9.0E-06 AAAGGTCAGG 10 V_ISGF4G_04_M02875 TRANSFAC + 135969839 135969852 7.0E-06 GGAAAACTGAACTT 14 V_ELF1_Q6_M00746 TRANSFAC - 135966474 135966485 5.0E-06 GTAGGAGGAAGT 12 V_GCNF_01_M00526 TRANSFAC + 135967379 135967396 4.0E-06 TGCAAGGTCAAGAGTACC 18 V_LRH1_Q5_M01142 TRANSFAC - 135967378 135967389 1.0E-05 TTGACCTTGCAT 12 V_YY1_03_M02044 TRANSFAC - 135969214 135969225 0.0E+00 GCCGCCATTTTT 12 V_PKNOX2_01_M01411 TRANSFAC + 135970533 135970548 8.0E-06 AAAGGCCTGTCAGTGC 16 V_MYOD_Q6_01_M00929 TRANSFAC + 135969986 135970003 8.0E-06 CGGAAGCAGGTGGCCTTT 18 V_FOXJ3_06_M02855 TRANSFAC + 135967151 135967167 5.0E-06 GGGAACACAACAAAGTA 17 V_TFIIA_Q6_M00707 TRANSFAC + 135966999 135967010 1.0E-06 TATGTAAGGAAC 12 V_TCF7_04_M02921 TRANSFAC - 135969700 135969714 7.0E-06 AATTATTATTAAAAT 15 V_ZFP206_01_M01742 TRANSFAC + 135969142 135969152 5.0E-06 TGCGCAAGCGC 11 V_BDP1_01_M01796 TRANSFAC + 135969065 135969076 2.0E-06 GGTCTCGAACTC 12 V_ZFP161_04_M02933 TRANSFAC - 135969033 135969046 1.0E-05 GTCGCGCAGAGAAA 14 V_FOXO3_01_M00477 TRANSFAC - 135969332 135969345 1.0E-05 CGCTTGTTTTCGAT 14 V_NRF1_Q6_M00652 TRANSFAC - 135969142 135969151 8.0E-06 CGCTTGCGCA 10 V_GZF1_01_M01069 TRANSFAC - 135969379 135969390 4.0E-06 TGCGCGTCAATA 12 V_RSRFC4_01_M00026 TRANSFAC + 135969700 135969715 8.0E-06 ATTTTAATAATAATTC 16 V_RSRFC4_01_M00026 TRANSFAC - 135969700 135969715 3.0E-06 GAATTATTATTAAAAT 16 V_E47_01_M00002 TRANSFAC + 135969988 135970002 9.0E-06 GAAGCAGGTGGCCTT 15 V_ESRRA_03_M02748 TRANSFAC + 135967377 135967393 1.0E-06 AATGCAAGGTCAAGAGT 17 V_SOX8_03_M02808 TRANSFAC - 135969700 135969716 6.0E-06 AGAATTATTATTAAAAT 17 V_SOX8_03_M02808 TRANSFAC - 135969703 135969719 3.0E-06 GGAAGAATTATTATTAA 17 V_NUR77_Q5_M01217 TRANSFAC + 135966930 135966939 7.0E-06 CTGACCTTTG 10 V_NUR77_Q5_M01217 TRANSFAC - 135967380 135967389 7.0E-06 TTGACCTTGC 10 V_SRF_06_M02916 TRANSFAC - 135968551 135968567 0.0E+00 TCAAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 135968552 135968568 0.0E+00 CTCAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 135968553 135968569 0.0E+00 TCTCAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 135968554 135968570 2.0E-06 GTCTCAAAAAAAAAAAA 17 V_ERR1_Q2_01_M02093 TRANSFAC + 135967381 135967391 4.0E-06 CAAGGTCAAGA 11 V_SATB1_01_M01232 TRANSFAC + 135969701 135969712 1.0E-06 TTTTAATAATAA 12 V_MEF2_01_M00006 TRANSFAC + 135969701 135969716 1.0E-06 TTTTAATAATAATTCT 16 V_FOXO4_01_M00472 TRANSFAC + 135966966 135966976 8.0E-06 CTAAACAATCT 11 V_HMEF2_Q6_M00406 TRANSFAC + 135969701 135969716 9.0E-06 TTTTAATAATAATTCT 16 V_SOX5_07_M02909 TRANSFAC - 135969703 135969719 1.0E-06 GGAAGAATTATTATTAA 17 V_BRF1_01_M01747 TRANSFAC - 135969064 135969076 5.0E-06 GAGTTCGAGACCC 13 V_TCF3_05_M02920 TRANSFAC - 135968555 135968569 4.0E-06 TCTCAAAAAAAAAAA 15 V_BRCA_01_M01082 TRANSFAC + 135970562 135970569 1.0E-05 TTCTGTTG 8 V_GLIS2_04_M02863 TRANSFAC - 135969700 135969713 0.0E+00 ATTATTATTAAAAT 14 V_PAX4_04_M00380 TRANSFAC + 135967082 135967111 1.0E-05 AAAAAACTCTTCACAATCTAATGCCATTCT 30 V_SOX14_03_M02798 TRANSFAC + 135969702 135969717 0.0E+00 TTTAATAATAATTCTT 16 V_SOX14_03_M02798 TRANSFAC - 135969702 135969717 0.0E+00 AAGAATTATTATTAAA 16 V_NANOG_02_M01247 TRANSFAC - 135968548 135968567 2.0E-06 TCAAAAAAAAAAAAAAAAAA 20 V_OCT4_01_M01125 TRANSFAC - 135969700 135969714 5.0E-06 AATTATTATTAAAAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.