Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

NTM Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 50863 neurotrimin chr11 + 131235370 - 131240870 131240370 Transcription Factor Binding Sites   Download all TFBS in the NTM promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFIA_NFI_full_dimeric_15_1 SELEX + 131242628 131242642 5.0E-06 CTGGCTGCATGCCAG 15 NFIA_NFI_full_dimeric_15_1 SELEX - 131242628 131242642 6.0E-06 CTGGCATGCAGCCAG 15 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 131242662 131242678 6.0E-06 AATTTACATATAAATTA 17 LHX6_homeodomain_full_dimeric_16_1 SELEX + 131243393 131243408 2.0E-06 GAATCAGCACTGATTA 16 LHX6_homeodomain_full_dimeric_16_1 SELEX - 131243393 131243408 1.0E-06 TAATCAGTGCTGATTC 16 POU5F1P1_POU_DBD_monomeric_9_1 SELEX - 131242663 131242671 3.0E-06 TATGTAAAT 9 POU5F1P1_POU_DBD_monomeric_9_1 SELEX - 131242675 131242683 4.0E-06 TATGCTAAT 9 POU3F4_POU_DBD_monomeric_11_1 SELEX + 131240996 131241006 9.0E-06 TGCATAAGTAA 11 POU2F3_POU_DBD_monomeric_9_1 SELEX - 131242663 131242671 4.0E-06 TATGTAAAT 9 POU2F3_POU_DBD_monomeric_9_1 SELEX - 131242675 131242683 3.0E-06 TATGCTAAT 9 CUX1_CUT_DBD_dimeric_17_1 SELEX - 131240797 131240813 1.0E-05 ACCGAAGGCAAATCAAT 17 ZNF232_C2H2_full_monomeric_19_1 SELEX - 131242659 131242677 5.0E-06 AATTTATATGTAAATTCAG 19 NFIX_NFI_full_dimeric_15_2 SELEX + 131242628 131242642 6.0E-06 CTGGCTGCATGCCAG 15 NFIX_NFI_full_dimeric_15_2 SELEX - 131242628 131242642 6.0E-06 CTGGCATGCAGCCAG 15 POU1F1_POU_DBD_monomeric_14_1 SELEX - 131242672 131242685 9.0E-06 CGTATGCTAATTTA 14 Sox17_HMG_DBD_dimeric_15_1 SELEX + 131242329 131242343 1.0E-05 AGCAGTATCAGTGTG 15 POU2F2_POU_DBD_monomeric_11_1 SELEX - 131242662 131242672 0.0E+00 ATATGTAAATT 11 POU2F2_POU_DBD_monomeric_11_1 SELEX - 131242674 131242684 2.0E-06 GTATGCTAATT 11 POU3F4_POU_DBD_monomeric_9_1 SELEX - 131242663 131242671 4.0E-06 TATGTAAAT 9 POU3F4_POU_DBD_monomeric_9_1 SELEX - 131242675 131242683 3.0E-06 TATGCTAAT 9 IRF7_IRF_DBD_trimeric_17_1 SELEX - 131243200 131243216 5.0E-06 GAAGAAAAAATCGCCTT 17 Pou2f2_POU_DBD_monomeric_9_1 SELEX - 131242663 131242671 5.0E-06 TATGTAAAT 9 Pou2f2_POU_DBD_monomeric_9_1 SELEX - 131242675 131242683 3.0E-06 TATGCTAAT 9 TEAD1_TEA_full_monomeric_10_1 SELEX + 131243192 131243201 3.0E-06 CACATTCCAA 10 POU3F3_POU_DBD_monomeric_13_1 SELEX - 131242661 131242673 2.0E-06 TATATGTAAATTC 13 POU3F3_POU_DBD_monomeric_13_1 SELEX - 131242673 131242685 2.0E-06 CGTATGCTAATTT 13 ONECUT1_CUT_full_monomeric_14_1 SELEX - 131240794 131240807 1.0E-05 GGCAAATCAATAGC 14 ONECUT1_CUT_full_monomeric_14_1 SELEX - 131240949 131240962 1.0E-06 ATCAAATCAATATT 14 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX + 131243392 131243409 5.0E-06 GGAATCAGCACTGATTAG 18 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX - 131243392 131243409 6.0E-06 CTAATCAGTGCTGATTCC 18 ONECUT2_CUT_DBD_monomeric_14_1 SELEX - 131240949 131240962 1.0E-06 ATCAAATCAATATT 14 SOX7_HMG_full_dimeric_17_1 SELEX + 131242328 131242344 9.0E-06 AAGCAGTATCAGTGTGT 17 ZSCAN4_C2H2_full_monomeric_15_1 SELEX - 131240370 131240384 6.0E-06 CACACACACTCTCAG 15 ZSCAN4_C2H2_full_monomeric_15_1 SELEX - 131242333 131242347 4.0E-06 CACACACACTGATAC 15 POU3F1_POU_DBD_monomeric_12_1 SELEX - 131242661 131242672 1.0E-06 ATATGTAAATTC 12 POU3F1_POU_DBD_monomeric_12_1 SELEX - 131242673 131242684 2.0E-06 GTATGCTAATTT 12 Foxd3_MA0041.1 JASPAR + 131240948 131240959 2.0E-06 GAATATTGATTT 12 TEAD3_TEA_DBD_monomeric_8_1 SELEX + 131243193 131243200 1.0E-05 ACATTCCA 8 Nkx3-2_MA0122.1 JASPAR + 131243473 131243481 2.0E-06 TTAAGTGGA 9 GSC_homeodomain_full_monomeric_10_1 SELEX - 131243426 131243435 8.0E-06 GCTAATCCCC 10 NFIB_NFI_full_dimeric_15_1 SELEX + 131242628 131242642 6.0E-06 CTGGCTGCATGCCAG 15 NFIB_NFI_full_dimeric_15_1 SELEX - 131242628 131242642 7.0E-06 CTGGCATGCAGCCAG 15 Pou5f1_MA0142.1 JASPAR - 131240993 131241007 6.0E-06 TTTACTTATGCACAT 15 Pou5f1_MA0142.1 JASPAR - 131242663 131242677 3.0E-06 AATTTATATGTAAAT 15 POU2F1_POU_DBD_monomeric_12_1 SELEX - 131242674 131242685 3.0E-06 CGTATGCTAATT 12 TEAD4_TEA_DBD_monomeric_10_1 SELEX + 131243192 131243201 4.0E-06 CACATTCCAA 10 POU3F2_POU_DBD_monomeric_12_1 SELEX - 131242661 131242672 1.0E-06 ATATGTAAATTC 12 POU3F2_POU_DBD_monomeric_12_1 SELEX - 131242673 131242684 1.0E-06 GTATGCTAATTT 12 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 131243222 131243234 1.0E-06 TAAAACAAAAACA 13 RREB1_MA0073.1 JASPAR + 131243337 131243356 3.0E-06 CCACAACCCAACCAGCAACC 20 RREB1_MA0073.1 JASPAR + 131243341 131243360 7.0E-06 AACCCAACCAGCAACCAAGA 20 ONECUT3_CUT_DBD_monomeric_14_1 SELEX - 131240949 131240962 1.0E-06 ATCAAATCAATATT 14 TEAD1_MA0090.1 JASPAR + 131243192 131243203 7.0E-06 CACATTCCAAGG 12 V_ZSCAN4_03_M02838 TRANSFAC - 131240989 131241005 4.0E-06 TACTTATGCACATACAT 17 V_POU3F3_01_M03090 TRANSFAC + 131240990 131241006 6.0E-06 TGTATGTGCATAAGTAA 17 V_DUXL_01_M01390 TRANSFAC - 131243464 131243480 3.0E-06 CCACTTAATCAACCCTG 17 V_NRSF_Q4_M01028 TRANSFAC + 131240858 131240876 7.0E-06 CCCGAGTCGGCTGTGCTGC 19 V_OBOX1_01_M01450 TRANSFAC + 131243422 131243438 9.0E-06 GAGGGGGGATTAGCTCC 17 V_FOXD3_01_M00130 TRANSFAC + 131240948 131240959 3.0E-06 GAATATTGATTT 12 V_POU5F1_02_M02245 TRANSFAC - 131240993 131241007 6.0E-06 TTTACTTATGCACAT 15 V_POU5F1_02_M02245 TRANSFAC - 131242663 131242677 3.0E-06 AATTTATATGTAAAT 15 V_MAFB_03_M02879 TRANSFAC + 131243102 131243116 5.0E-06 AACTTGCAGAATTAC 15 V_FOXJ1_04_M02854 TRANSFAC - 131240564 131240578 1.0E-05 AGGACACAACAAGAA 15 V_OCT1_Q5_01_M00930 TRANSFAC + 131242661 131242671 7.0E-06 GAATTTACATA 11 V_OCTAMER_01_M01324 TRANSFAC + 131240990 131241006 6.0E-06 TGTATGTGCATAAGTAA 17 V_CEBP_C_M00201 TRANSFAC - 131243528 131243545 0.0E+00 GGTGTTCTGCAAGGGACA 18 V_OCT1_01_M00135 TRANSFAC - 131242658 131242676 2.0E-06 ATTTATATGTAAATTCAGT 19 V_OCT1_01_M00135 TRANSFAC - 131242670 131242688 0.0E+00 TCACGTATGCTAATTTATA 19 V_POU2F3_01_M01476 TRANSFAC - 131242659 131242674 1.0E-06 TTATATGTAAATTCAG 16 V_POU2F3_01_M01476 TRANSFAC - 131242671 131242686 1.0E-06 ACGTATGCTAATTTAT 16 V_PITX3_Q2_M01735 TRANSFAC + 131240438 131240446 2.0E-06 TGGATTAGA 9 V_MAF_Q6_M00648 TRANSFAC - 131242601 131242616 6.0E-06 ATGGTGGAAGTTTGGT 16 V_SPZ1_01_M00446 TRANSFAC + 131243421 131243435 7.0E-06 GGAGGGGGGATTAGC 15 V_OCT_C_M00210 TRANSFAC + 131242672 131242684 6.0E-06 TAAATTAGCATAC 13 V_HTF_01_M00538 TRANSFAC - 131242673 131242696 6.0E-06 AAAAAAAATCACGTATGCTAATTT 24 V_GM497_04_M02864 TRANSFAC - 131240382 131240397 4.0E-06 ACACACACACACGCAC 16 V_GM497_04_M02864 TRANSFAC - 131242343 131242358 1.0E-05 GCACGCACACACACAC 16 V_GM497_04_M02864 TRANSFAC + 131243185 131243200 1.0E-05 TGCAGCACACATTCCA 16 V_NKX62_Q2_M00489 TRANSFAC + 131240522 131240533 7.0E-06 GAGATAATTACG 12 V_MEF2A_Q6_M02024 TRANSFAC - 131241185 131241194 9.0E-06 TATTTAAAGT 10 V_RPC155_01_M01798 TRANSFAC - 131240439 131240454 6.0E-06 TCATTGGTTCTAATCC 16 V_HNF6_Q6_M00639 TRANSFAC - 131240950 131240961 1.0E-06 TCAAATCAATAT 12 V_CEBPE_Q6_M01868 TRANSFAC + 131243100 131243113 8.0E-06 CAAACTTGCAGAAT 14 V_ZFP105_03_M02827 TRANSFAC - 131243221 131243235 3.0E-06 TTAAAACAAAAACAG 15 V_IRX4_01_M01410 TRANSFAC - 131242661 131242677 2.0E-06 AATTTATATGTAAATTC 17 V_IRX4_01_M01410 TRANSFAC + 131242662 131242678 0.0E+00 AATTTACATATAAATTA 17 V_OBOX2_01_M01364 TRANSFAC + 131243422 131243438 6.0E-06 GAGGGGGGATTAGCTCC 17 V_CLOX_01_M00103 TRANSFAC + 131240949 131240963 5.0E-06 AATATTGATTTGATT 15 V_DUXBL_01_M02968 TRANSFAC - 131243464 131243480 3.0E-06 CCACTTAATCAACCCTG 17 V_OCT1_04_M00138 TRANSFAC + 131240987 131241009 7.0E-06 ATATGTATGTGCATAAGTAAAAT 23 V_OCT1_04_M00138 TRANSFAC - 131242656 131242678 0.0E+00 TAATTTATATGTAAATTCAGTAT 23 V_OCT1_04_M00138 TRANSFAC - 131242662 131242684 1.0E-06 GTATGCTAATTTATATGTAAATT 23 V_OCT1_04_M00138 TRANSFAC - 131242668 131242690 3.0E-06 AATCACGTATGCTAATTTATATG 23 V_PITX3_01_M01343 TRANSFAC + 131243424 131243439 0.0E+00 GGGGGGATTAGCTCCC 16 V_TEF_01_M01305 TRANSFAC + 131243192 131243203 7.0E-06 CACATTCCAAGG 12 V_RREB1_01_M00257 TRANSFAC + 131243335 131243348 9.0E-06 CCCCACAACCCAAC 14 V_RREB1_01_M00257 TRANSFAC + 131243337 131243350 5.0E-06 CCACAACCCAACCA 14 V_IRX3_01_M01318 TRANSFAC + 131242662 131242678 1.0E-06 AATTTACATATAAATTA 17 V_SOX11_03_M02795 TRANSFAC - 131243220 131243236 9.0E-06 CTTAAAACAAAAACAGA 17 V_OCT_Q6_M00795 TRANSFAC + 131242661 131242671 5.0E-06 GAATTTACATA 11 V_IRX5_01_M01472 TRANSFAC - 131242661 131242677 6.0E-06 AATTTATATGTAAATTC 17 V_IRX5_01_M01472 TRANSFAC + 131242662 131242678 1.0E-06 AATTTACATATAAATTA 17 V_FOXO1_Q5_M01216 TRANSFAC - 131243220 131243228 1.0E-05 AAAAACAGA 9 V_PTF1BETA_Q6_M00657 TRANSFAC + 131241166 131241179 9.0E-06 GAAGAAATTACAAG 14 V_ELF1_Q6_M00746 TRANSFAC + 131241175 131241186 1.0E-05 ACAAGAGGAAAC 12 V_IRX3_02_M01485 TRANSFAC + 131242662 131242678 7.0E-06 AATTTACATATAAATTA 17 V_CIZ_01_M00734 TRANSFAC - 131243205 131243213 2.0E-06 GAAAAAATC 9 V_TBP_01_M00471 TRANSFAC + 131242670 131242677 8.0E-06 TATAAATT 8 V_OBOX2_02_M03064 TRANSFAC + 131243422 131243438 6.0E-06 GAGGGGGGATTAGCTCC 17 V_FAC1_01_M00456 TRANSFAC - 131240564 131240577 7.0E-06 GGACACAACAAGAA 14 V_OCT2_01_M01368 TRANSFAC - 131242659 131242674 1.0E-06 TTATATGTAAATTCAG 16 V_OCT2_01_M01368 TRANSFAC - 131242671 131242686 2.0E-06 ACGTATGCTAATTTAT 16 V_FOXL1_02_M02857 TRANSFAC - 131243223 131243238 0.0E+00 AGCTTAAAACAAAAAC 16 V_FOXJ3_06_M02855 TRANSFAC + 131240578 131240594 3.0E-06 TTCAGCAAAACAGTGGA 17 V_NANOG_01_M01123 TRANSFAC - 131240359 131240370 8.0E-06 GGAATCATTTAC 12 V_IRX2_01_M01405 TRANSFAC - 131242661 131242677 9.0E-06 AATTTATATGTAAATTC 17 V_IRX2_01_M01405 TRANSFAC + 131242662 131242678 2.0E-06 AATTTACATATAAATTA 17 V_OCT1_07_M00248 TRANSFAC - 131242662 131242673 0.0E+00 TATATGTAAATT 12 V_OCT1_07_M00248 TRANSFAC - 131242674 131242685 1.0E-06 CGTATGCTAATT 12 V_SRF_06_M02916 TRANSFAC - 131243220 131243236 1.0E-06 CTTAAAACAAAAACAGA 17 V_SRF_06_M02916 TRANSFAC - 131243221 131243237 6.0E-06 GCTTAAAACAAAAACAG 17 V_DLX3_02_M02051 TRANSFAC + 131240525 131240532 5.0E-06 ATAATTAC 8 V_SOX18_04_M02905 TRANSFAC + 131242656 131242671 1.0E-06 ATACTGAATTTACATA 16 V_SOX1_03_M02802 TRANSFAC - 131240948 131240963 4.0E-06 AATCAAATCAATATTC 16 V_CTF1_01_M01196 TRANSFAC - 131242628 131242641 8.0E-06 TGGCATGCAGCCAG 14 V_CTF1_01_M01196 TRANSFAC + 131242629 131242642 4.0E-06 TGGCTGCATGCCAG 14 V_HMEF2_Q6_M00406 TRANSFAC + 131240131 131240146 4.0E-06 CTTTAAAATTTCCCAT 16 V_MAFK_04_M02880 TRANSFAC + 131241166 131241180 6.0E-06 GAAGAAATTACAAGA 15 V_IRXB3_01_M01377 TRANSFAC - 131242661 131242677 6.0E-06 AATTTATATGTAAATTC 17 V_IRXB3_01_M01377 TRANSFAC + 131242662 131242678 2.0E-06 AATTTACATATAAATTA 17 V_OBOX3_02_M03065 TRANSFAC + 131243422 131243438 3.0E-06 GAGGGGGGATTAGCTCC 17 TLX1_NFIC_MA0119.1 JASPAR - 131242628 131242641 8.0E-06 TGGCATGCAGCCAG 14 TLX1_NFIC_MA0119.1 JASPAR + 131242629 131242642 4.0E-06 TGGCTGCATGCCAG 14 V_STAT1_05_M01260 TRANSFAC - 131240130 131240151 1.0E-05 GGCTTATGGGAAATTTTAAAGG 22 V_OBOX3_01_M01466 TRANSFAC + 131243422 131243438 3.0E-06 GAGGGGGGATTAGCTCC 17 V_PAX4_04_M00380 TRANSFAC - 131242668 131242697 6.0E-06 AAAAAAAAATCACGTATGCTAATTTATATG 30 V_OCT4_01_M01125 TRANSFAC - 131240993 131241007 5.0E-06 TTTACTTATGCACAT 15 V_OCT4_01_M01125 TRANSFAC - 131242663 131242677 0.0E+00 AATTTATATGTAAAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.