Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CLEC4A Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 50856 C-type lectin domain family 4, member A chr12 + 8271227 - 8276727 8276227 Transcription Factor Binding Sites   Download all TFBS in the CLEC4A promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 8279095 8279105 9.0E-06 CATGAGTCACT 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 8279095 8279105 6.0E-06 AGTGACTCATG 11 HOXD12_homeodomain_DBD_monomeric_9_1 SELEX - 8276196 8276204 4.0E-06 GCAATAAAA 9 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX - 8276195 8276204 7.0E-06 GCAATAAAAG 10 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX - 8276286 8276295 2.0E-06 ACAATAAAAA 10 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX - 8276286 8276295 2.0E-06 ACAATAAAAA 10 SOX10_HMG_full_dimeric_15_3 SELEX + 8276515 8276529 1.0E-06 ATGAATTCAAGTCCT 15 Pax6_MA0069.1 JASPAR - 8275918 8275931 1.0E-05 TTCACGAATTAGTT 14 SPIC_ETS_full_monomeric_14_1 SELEX - 8276162 8276175 1.0E-06 GGAAAGAGGAAGAA 14 PROX1_PROX_DBD_dimeric_12_1 SELEX - 8279971 8279982 8.0E-06 TAAGACTTCTTT 12 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 8275833 8275849 9.0E-06 ACCAACAAGGAAACACA 17 SOX9_HMG_full_dimeric_17_3 SELEX + 8276514 8276530 3.0E-06 AATGAATTCAAGTCCTC 17 EWSR1-FLI1_MA0149.1 JASPAR + 8276369 8276386 8.0E-06 GAAAGGAAGGAGGTAATT 18 EWSR1-FLI1_MA0149.1 JASPAR + 8279898 8279915 9.0E-06 GGAAGTAAGCAAGGCCTT 18 IRF7_IRF_DBD_trimeric_17_1 SELEX - 8276435 8276451 1.0E-05 CTTCAGAAAATCTGTTT 17 SPIB_ETS_DBD_monomeric_14_1 SELEX - 8276162 8276175 4.0E-06 GGAAAGAGGAAGAA 14 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX - 8276196 8276205 5.0E-06 TGCAATAAAA 10 Ar_MA0007.1 JASPAR - 8279779 8279800 5.0E-06 CATCTAACATCCTGTTCCTCAG 22 SOX8_HMG_full_dimeric_13_1 SELEX + 8276515 8276527 1.0E-06 ATGAATTCAAGTC 13 Sox17_HMG_DBD_dimeric_15_2 SELEX + 8276515 8276529 8.0E-06 ATGAATTCAAGTCCT 15 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX - 8276196 8276204 3.0E-06 GCAATAAAA 9 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX - 8276287 8276295 7.0E-06 ACAATAAAA 9 SOX2_HMG_full_dimeric_15_1 SELEX + 8276515 8276529 8.0E-06 ATGAATTCAAGTCCT 15 HOXC11_homeodomain_full_monomeric_11_2 SELEX - 8276195 8276205 6.0E-06 TGCAATAAAAG 11 ATF4_bZIP_DBD_dimeric_13_1 SELEX + 8273094 8273106 0.0E+00 ACATGATGCAATA 13 Atf4_bZIP_DBD_dimeric_14_1 SELEX + 8273093 8273106 0.0E+00 AACATGATGCAATA 14 HOXA13_homeodomain_full_monomeric_10_1 SELEX - 8276286 8276295 2.0E-06 ACAATAAAAA 10 RFX5_RFX_DBD_dimeric_16_3 SELEX + 8279859 8279874 7.0E-06 TGTTCACATGGCAACT 16 JDP2_bZIP_full_dimeric_9_1 SELEX + 8279096 8279104 1.0E-05 ATGAGTCAC 9 SPDEF_ETS_full_putative-multimer_16_1 SELEX - 8276280 8276295 3.0E-06 ACAATAAAAACTAAAA 16 SOX18_HMG_full_dimeric_15_3 SELEX + 8276515 8276529 7.0E-06 ATGAATTCAAGTCCT 15 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX - 8276286 8276295 4.0E-06 ACAATAAAAA 10 CPEB1_RRM_full_monomeric_8_1 SELEX - 8276286 8276293 4.0E-06 AATAAAAA 8 ETV6_ETS_full_monomeric_10_1 SELEX + 8279895 8279904 2.0E-06 AGCGGAAGTA 10 SPI1_ETS_full_monomeric_14_1 SELEX - 8276162 8276175 4.0E-06 GGAAAGAGGAAGAA 14 CDX2_homeodomain_DBD_monomeric_9_1 SELEX - 8276196 8276204 3.0E-06 GCAATAAAA 9 CDX2_homeodomain_DBD_monomeric_9_1 SELEX - 8276287 8276295 6.0E-06 ACAATAAAA 9 CDX1_homeodomain_DBD_monomeric_9_1 SELEX - 8276196 8276204 3.0E-06 GCAATAAAA 9 CDX1_homeodomain_DBD_monomeric_9_1 SELEX - 8276287 8276295 6.0E-06 ACAATAAAA 9 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX - 8276195 8276205 8.0E-06 TGCAATAAAAG 11 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX - 8276286 8276295 6.0E-06 ACAATAAAAA 10 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 8276399 8276412 5.0E-06 ATAAACAGGAACCA 14 V_FOXP1_01_M00987 TRANSFAC + 8276197 8276216 5.0E-06 TTTATTGCATTTGCTTGCAT 20 V_FOXP1_01_M00987 TRANSFAC + 8276283 8276302 1.0E-06 TAGTTTTTATTGTGGTTCTT 20 V_FOXP3_Q4_M00992 TRANSFAC - 8276430 8276446 0.0E+00 GAAAATCTGTTTCAGAT 17 V_GATA2_02_M00348 TRANSFAC - 8279830 8279839 3.0E-06 AATGATAAGA 10 V_XPF1_Q6_M00684 TRANSFAC + 8279778 8279787 3.0E-06 TCTGAGGAAC 10 V_HNF1_02_M01379 TRANSFAC + 8273079 8273095 1.0E-06 CCTAGGTTAACTGCAAC 17 V_ZEC_01_M01081 TRANSFAC - 8279767 8279779 5.0E-06 GAAGCTAAGTTGC 13 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC + 8279119 8279130 1.0E-06 AATTTTTAAAAG 12 V_AML3_Q6_M01856 TRANSFAC - 8276292 8276299 1.0E-05 AACCACAA 8 V_GATA3_03_M00351 TRANSFAC + 8276426 8276435 5.0E-06 AAAGATCTGA 10 V_SPIB_02_M02041 TRANSFAC + 8279895 8279904 1.0E-06 AGCGGAAGTA 10 V_HOXA13_02_M01297 TRANSFAC - 8276153 8276161 9.0E-06 AAATAAAAG 9 V_SPDEF_04_M02915 TRANSFAC - 8276408 8276423 6.0E-06 TAAAACATCTTATAAA 16 V_CBF_02_M01080 TRANSFAC + 8276269 8276284 3.0E-06 TGAACTGCGGTTTTTA 16 V_CBF_02_M01080 TRANSFAC - 8280011 8280026 2.0E-06 AGAAATGTGGTCTATT 16 V_IRF2_Q6_M01882 TRANSFAC + 8276509 8276524 1.0E-05 TCAAAAATGAATTCAA 16 V_CEBP_Q2_M00190 TRANSFAC - 8273094 8273107 2.0E-06 ATATTGCATCATGT 14 V_HTF_01_M00538 TRANSFAC + 8279813 8279836 5.0E-06 AGATTTGGCCACGTTTCTCTTATC 24 V_PU1_Q4_M01172 TRANSFAC + 8276139 8276157 6.0E-06 AGTGCTTGGTTCTTCTTTT 19 V_PU1_Q4_M01172 TRANSFAC + 8276156 8276174 0.0E+00 TTATTTTTCTTCCTCTTTC 19 V_LDSPOLYA_B_M00317 TRANSFAC - 8273629 8273644 0.0E+00 CAAGTGTTTTCTCATT 16 V_HBP1_Q2_M01661 TRANSFAC - 8280026 8280034 3.0E-06 TTCAATCAA 9 V_CEBPB_01_M00109 TRANSFAC + 8273094 8273107 4.0E-06 ACATGATGCAATAT 14 V_CETS1P54_02_M00074 TRANSFAC + 8275910 8275922 9.0E-06 CTACAGGAAACTA 13 V_SPIC_01_M02042 TRANSFAC + 8279895 8279904 1.0E-06 AGCGGAAGTA 10 V_BACH1_01_M00495 TRANSFAC + 8279093 8279107 8.0E-06 GGCATGAGTCACTAC 15 V_CEBPE_Q6_M01868 TRANSFAC - 8279913 8279926 1.0E-06 TGAGATTTCAAAAG 14 V_HOXB13_01_M01467 TRANSFAC - 8276192 8276207 9.0E-06 AATGCAATAAAAGTGG 16 V_HOXB13_01_M01467 TRANSFAC - 8276283 8276298 7.0E-06 ACCACAATAAAAACTA 16 V_ERF_01_M01984 TRANSFAC + 8279895 8279904 5.0E-06 AGCGGAAGTA 10 V_AML2_01_M01759 TRANSFAC - 8276292 8276299 1.0E-05 AACCACAA 8 V_CDX2_01_M01449 TRANSFAC - 8276193 8276208 4.0E-06 AAATGCAATAAAAGTG 16 V_RXRA_04_M02895 TRANSFAC - 8275883 8275898 9.0E-06 TGGCAAAGTTTAAACC 16 V_CDX2_Q5_M00729 TRANSFAC + 8276192 8276205 3.0E-06 CCACTTTTATTGCA 14 V_JUNDM2_04_M02876 TRANSFAC + 8279092 8279107 6.0E-06 AGGCATGAGTCACTAC 16 V_CDX1_01_M01373 TRANSFAC - 8276193 8276208 8.0E-06 AAATGCAATAAAAGTG 16 V_SPIB_01_M01204 TRANSFAC - 8276159 8276175 4.0E-06 GGAAAGAGGAAGAAAAA 17 V_XFD2_01_M00268 TRANSFAC - 8276402 8276415 4.0E-06 CTTATAAACAGGAA 14 V_NKX23_01_M01457 TRANSFAC + 8276134 8276149 4.0E-06 CTCTAAGTGCTTGGTT 16 V_ELK1_01_M00007 TRANSFAC + 8279892 8279907 5.0E-06 GAGAGCGGAAGTAAGC 16 V_ELF1_Q6_M00746 TRANSFAC - 8276163 8276174 2.0E-06 GAAAGAGGAAGA 12 V_POU5F1_01_M01307 TRANSFAC - 8276198 8276207 2.0E-06 AATGCAATAA 10 V_GABPBETA_Q3_M01876 TRANSFAC + 8279895 8279905 4.0E-06 AGCGGAAGTAA 11 V_HNF4_Q6_01_M01031 TRANSFAC - 8275886 8275899 7.0E-06 ATGGCAAAGTTTAA 14 V_GATA6_01_M00462 TRANSFAC - 8279830 8279839 1.0E-06 AATGATAAGA 10 V_HNF1B_01_M01425 TRANSFAC - 8275823 8275839 5.0E-06 TGTTGGTAACTAACTCT 17 V_PLZF_02_M01075 TRANSFAC + 8276546 8276574 2.0E-06 CTCTTCTGCAGGTAAAGATCATTTTCTAG 29 V_CEBPB_Q6_M01896 TRANSFAC + 8273097 8273106 5.0E-06 TGATGCAATA 10 V_BBX_03_M02739 TRANSFAC - 8280023 8280037 1.0E-05 TTCTTCAATCAAGAA 15 V_SRF_06_M02916 TRANSFAC - 8276151 8276167 4.0E-06 GAAGAAAAATAAAAGAA 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 8276369 8276386 8.0E-06 GAAAGGAAGGAGGTAATT 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 8279898 8279915 9.0E-06 GGAAGTAAGCAAGGCCTT 18 V_YY1_01_M00059 TRANSFAC - 8276507 8276523 2.0E-06 TGAATTCATTTTTGAAC 17 V_SOX1_03_M02802 TRANSFAC - 8276510 8276525 7.0E-06 CTTGAATTCATTTTTG 16 V_IRF1_01_M00062 TRANSFAC - 8276152 8276164 5.0E-06 GAAAAATAAAAGA 13 V_PIT1_Q6_M00802 TRANSFAC - 8276504 8276521 1.0E-06 AATTCATTTTTGAACCTC 18 V_GATA5_03_M02756 TRANSFAC - 8279826 8279842 2.0E-06 ATGAATGATAAGAGAAA 17 V_HOXA10_01_M01464 TRANSFAC - 8273067 8273082 3.0E-06 TAGGTAATAAAGAATT 16 V_GATA6_04_M02757 TRANSFAC - 8279826 8279842 3.0E-06 ATGAATGATAAGAGAAA 17 V_HOXD10_01_M01375 TRANSFAC - 8276191 8276207 6.0E-06 AATGCAATAAAAGTGGG 17 V_HOXD10_01_M01375 TRANSFAC - 8276282 8276298 8.0E-06 ACCACAATAAAAACTAA 17 V_PBX1_Q3_M02028 TRANSFAC - 8280026 8280034 6.0E-06 TTCAATCAA 9 V_PPARA_01_M00242 TRANSFAC - 8279924 8279943 1.0E-05 CTGCGCTAGTTCCAAGGTGA 20 V_SPI1_02_M02043 TRANSFAC + 8279895 8279904 3.0E-06 AGCGGAAGTA 10 V_PAX6_01_M00097 TRANSFAC - 8275915 8275935 9.0E-06 CACCTTCACGAATTAGTTTCC 21 V_NANOG_02_M01247 TRANSFAC - 8276148 8276167 2.0E-06 GAAGAAAAATAAAAGAAGAA 20 V_NANOG_02_M01247 TRANSFAC - 8276284 8276303 4.0E-06 TAAGAACCACAATAAAAACT 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.