Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ARHGEF4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 50649 Rho guanine nucleotide exchange factor (GEF) 4 chr2 + 131669223 - 131674723 131674223 Transcription Factor Binding Sites   Download all TFBS in the ARHGEF4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 131678183 131678201 2.0E-06 TGCCCACAAGATGGCGCAG 19 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 131669274 131669285 4.0E-06 AATGAAAACAAA 12 GRHL1_CP2_full_dimeric_12_1 SELEX + 131672796 131672807 2.0E-06 AAAACCAGTTAA 12 POU2F2_POU_DBD_monomeric_11_1 SELEX + 131670401 131670411 8.0E-06 TTATGCAAAGT 11 Klf4_MA0039.2 JASPAR - 131670368 131670377 2.0E-06 TGGGTGTGGC 10 IRF1_MA0050.1 JASPAR - 131669271 131669282 7.0E-06 GAAAACAAAAGC 12 Tcfcp2l1_MA0145.1 JASPAR - 131678142 131678155 9.0E-06 CCAGCACCATCCAG 14 E2F8_E2F_DBD_dimeric_12_1 SELEX + 131669258 131669269 3.0E-06 TTTTCCCCCAAA 12 CTCF_C2H2_full_monomeric_17_1 SELEX + 131678184 131678200 2.0E-06 TGCGCCATCTTGTGGGC 17 Tcf7_HMG_DBD_monomeric_12_1 SELEX + 131673036 131673047 6.0E-06 ACACATCAAAGT 12 TFCP2_CP2_full_dimer-of-dimers_16_1 SELEX + 131672799 131672814 9.0E-06 ACCAGTTAAGACAGGA 16 POU3F1_POU_DBD_monomeric_12_1 SELEX + 131670401 131670412 6.0E-06 TTATGCAAAGTT 12 TEAD3_TEA_DBD_monomeric_8_1 SELEX - 131678153 131678160 1.0E-05 ACATTCCA 8 POU2F1_POU_DBD_monomeric_12_1 SELEX + 131670400 131670411 1.0E-05 CTTATGCAAAGT 12 Mafb_bZIP_DBD_dimeric_18_1 SELEX + 131669494 131669511 0.0E+00 TCTGCTCATGTAAGCAAT 18 Mafb_bZIP_DBD_dimeric_18_1 SELEX - 131669494 131669511 2.0E-06 ATTGCTTACATGAGCAGA 18 RUNX1_MA0002.2 JASPAR - 131678058 131678068 5.0E-06 GTCTGTGGTCT 11 TP53_MA0106.1 JASPAR - 131669740 131669759 5.0E-06 ATGAGCACGCCCGGACAAGC 20 TP53_MA0106.1 JASPAR - 131672812 131672831 7.0E-06 CCAGACATGACCTGGAATCC 20 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 131670096 131670110 1.0E-05 AGTTAAGAATTAAAA 15 POU3F2_POU_DBD_monomeric_12_1 SELEX + 131670401 131670412 9.0E-06 TTATGCAAAGTT 12 V_MINI20_B_M00324 TRANSFAC + 131669839 131669859 5.0E-06 GCCTGGCCCCACGGAGGCAGC 21 V_LEF1_04_M02774 TRANSFAC - 131673035 131673051 3.0E-06 ACATACTTTGATGTGTA 17 V_AML_Q6_M00769 TRANSFAC - 131678056 131678070 6.0E-06 CTGTCTGTGGTCTGA 15 V_POU3F3_01_M03090 TRANSFAC - 131670397 131670413 8.0E-06 AAACTTTGCATAAGGGG 17 V_BTEB3_Q5_M01865 TRANSFAC + 131669290 131669302 9.0E-06 CTGAGGGAGGCCT 13 V_YY1_02_M00069 TRANSFAC + 131678182 131678201 8.0E-06 ACTGCGCCATCTTGTGGGCA 20 V_DLX3_01_M01400 TRANSFAC + 131673025 131673041 3.0E-06 AACCAGTAATTACACAT 17 V_RORA1_01_M00156 TRANSFAC + 131672813 131672825 1.0E-05 GATTCCAGGTCAT 13 V_EVI1_04_M00081 TRANSFAC + 131670096 131670110 1.0E-05 AGTTAAGAATTAAAA 15 V_EVI1_04_M00081 TRANSFAC + 131672802 131672816 6.0E-06 AGTTAAGACAGGATT 15 V_BCL6_01_M01183 TRANSFAC + 131669245 131669260 2.0E-06 CATCTTAGATTTTTTT 16 V_GM397_03_M02760 TRANSFAC - 131670285 131670301 6.0E-06 CTGCTGTGCACAGCAGT 17 V_GM397_03_M02760 TRANSFAC + 131670286 131670302 6.0E-06 CTGCTGTGCACAGCAGT 17 V_FOXO4_02_M00476 TRANSFAC + 131669272 131669285 1.0E-06 CTTTTGTTTTCATT 14 V_AR_Q6_01_M01996 TRANSFAC - 131678071 131678085 2.0E-06 GTACCTGCTGTTCTC 15 V_OCTAMER_01_M01324 TRANSFAC - 131670397 131670413 8.0E-06 AAACTTTGCATAAGGGG 17 V_OCT1_01_M00135 TRANSFAC + 131670397 131670415 3.0E-06 CCCCTTATGCAAAGTTTCA 19 V_FOXO3A_Q1_M01137 TRANSFAC - 131669272 131669283 3.0E-06 TGAAAACAAAAG 12 V_YY1_Q6_M00793 TRANSFAC + 131678187 131678195 7.0E-06 GCCATCTTG 9 V_PRX2_Q2_M02115 TRANSFAC - 131670117 131670125 7.0E-06 TCAAAGTAA 9 V_TCFAP2E_04_M02926 TRANSFAC - 131669254 131669267 5.0E-06 TGGGGGAAAAAAAA 14 V_AR_03_M00956 TRANSFAC - 131678066 131678092 5.0E-06 TCCCTATGTACCTGCTGTTCTCCTGTC 27 V_ETS_Q4_M00771 TRANSFAC - 131672873 131672884 7.0E-06 AGGCACTTCCTC 12 V_HMBOX1_01_M01456 TRANSFAC + 131669692 131669708 5.0E-06 GTTCACTGGTTAATGAC 17 V_TCF3_04_M02816 TRANSFAC + 131673035 131673051 1.0E-06 TACACATCAAAGTATGT 17 V_PR_Q2_M00960 TRANSFAC + 131670377 131670386 4.0E-06 AAAAGAACAT 10 V_TGIF_02_M01346 TRANSFAC + 131669700 131669716 7.0E-06 GTTAATGACAGCAACCA 17 V_SPI1_03_M02078 TRANSFAC + 131672872 131672881 1.0E-06 AGAGGAAGTG 10 V_PR_01_M00954 TRANSFAC - 131670374 131670400 6.0E-06 GGGGGGACTATTGAATGTTCTTTTGGG 27 V_FOXO1_02_M00474 TRANSFAC + 131669272 131669285 4.0E-06 CTTTTGTTTTCATT 14 V_RUNX1_01_M02257 TRANSFAC - 131678058 131678068 5.0E-06 GTCTGTGGTCT 11 V_HNF1_Q6_M00790 TRANSFAC - 131670094 131670111 6.0E-06 CTTTTAATTCTTAACTGA 18 V_P53_03_M01651 TRANSFAC + 131669738 131669757 8.0E-06 GTGCTTGTCCGGGCGTGCTC 20 V_P53_03_M01651 TRANSFAC - 131669738 131669757 9.0E-06 GAGCACGCCCGGACAAGCAC 20 V_PXRRXR_02_M01153 TRANSFAC + 131670308 131670315 1.0E-05 AGAGTTCA 8 V_HOXB6_01_M01460 TRANSFAC - 131673027 131673042 4.0E-06 GATGTGTAATTACTGG 16 V_IK1_01_M00086 TRANSFAC - 131678255 131678267 4.0E-06 AAGTGGGAATAAC 13 V_HNF1_Q6_01_M01011 TRANSFAC + 131670093 131670113 2.0E-06 CTCAGTTAAGAATTAAAAGCA 21 V_ISRE_01_M00258 TRANSFAC - 131678153 131678167 1.0E-06 GAGTTTCACATTCCA 15 V_PAX6_Q2_M00979 TRANSFAC - 131672812 131672825 9.0E-06 ATGACCTGGAATCC 14 V_GR_01_M00955 TRANSFAC - 131670374 131670400 7.0E-06 GGGGGGACTATTGAATGTTCTTTTGGG 27 V_ERR1_Q3_M01841 TRANSFAC - 131672813 131672827 4.0E-06 ACATGACCTGGAATC 15 V_GRE_C_M00205 TRANSFAC - 131678071 131678086 2.0E-06 TGTACCTGCTGTTCTC 16 V_TCF7_03_M02817 TRANSFAC + 131673035 131673051 3.0E-06 TACACATCAAAGTATGT 17 V_NCX_02_M01420 TRANSFAC + 131670098 131670114 2.0E-06 TTAAGAATTAAAAGCAA 17 V_VMYB_01_M00003 TRANSFAC - 131678251 131678260 9.0E-06 AATAACTGAC 10 V_TGIF1_01_M03111 TRANSFAC + 131669700 131669716 7.0E-06 GTTAATGACAGCAACCA 17 V_CTCF_02_M01259 TRANSFAC - 131678185 131678204 0.0E+00 GAATGCCCACAAGATGGCGC 20 V_SOX11_03_M02795 TRANSFAC - 131669268 131669284 3.0E-06 ATGAAAACAAAAGCCTT 17 V_CTCF_01_M01200 TRANSFAC - 131678183 131678202 2.0E-06 ATGCCCACAAGATGGCGCAG 20 V_OCT1_B_M00342 TRANSFAC + 131670402 131670411 8.0E-06 TATGCAAAGT 10 V_FOXO1_Q5_M01216 TRANSFAC - 131669274 131669282 5.0E-06 GAAAACAAA 9 V_ELK1_01_M00007 TRANSFAC + 131672869 131672884 3.0E-06 TGCAGAGGAAGTGCCT 16 V_DLX7_01_M01486 TRANSFAC + 131673025 131673041 7.0E-06 AACCAGTAATTACACAT 17 V_YY1_03_M02044 TRANSFAC + 131678184 131678195 5.0E-06 TGCGCCATCTTG 12 V_MTF1_06_M02882 TRANSFAC + 131670096 131670109 9.0E-06 AGTTAAGAATTAAA 14 V_LEF1_Q2_01_M01022 TRANSFAC + 131673039 131673048 4.0E-06 CATCAAAGTA 10 V_LBP9_01_M01592 TRANSFAC - 131672797 131672813 1.0E-05 CCTGTCTTAACTGGTTT 17 V_LBP9_01_M01592 TRANSFAC + 131672800 131672816 6.0E-06 CCAGTTAAGACAGGATT 17 V_GABPBETA_Q3_M01876 TRANSFAC + 131672872 131672882 2.0E-06 AGAGGAAGTGC 11 V_TAL1_01_M01591 TRANSFAC - 131678025 131678037 6.0E-06 CTTCCTCTTCTCC 13 V_FOXL1_04_M02753 TRANSFAC - 131669271 131669287 5.0E-06 TCAATGAAAACAAAAGC 17 V_PXR_Q2_M00964 TRANSFAC + 131672851 131672862 9.0E-06 AGAGTTAGTGAA 12 V_IPF1_01_M01233 TRANSFAC + 131673028 131673037 8.0E-06 CAGTAATTAC 10 V_BDP1_01_M01796 TRANSFAC - 131670309 131670320 7.0E-06 TGACTTGAACTC 12 V_FOXO3_01_M00477 TRANSFAC + 131669272 131669285 1.0E-06 CTTTTGTTTTCATT 14 V_SPIC_02_M02077 TRANSFAC + 131672872 131672881 3.0E-06 AGAGGAAGTG 10 V_P53_05_M01655 TRANSFAC + 131669738 131669757 1.0E-06 GTGCTTGTCCGGGCGTGCTC 20 V_P53_05_M01655 TRANSFAC - 131669738 131669757 3.0E-06 GAGCACGCCCGGACAAGCAC 20 V_P53_05_M01655 TRANSFAC - 131672896 131672915 5.0E-06 GGCTTTGCTCTGACTTGCAC 20 V_P53_04_M01652 TRANSFAC + 131669738 131669757 1.0E-05 GTGCTTGTCCGGGCGTGCTC 20 V_P53_01_M00034 TRANSFAC + 131669738 131669757 5.0E-06 GTGCTTGTCCGGGCGTGCTC 20 V_P53_01_M00034 TRANSFAC - 131669738 131669757 6.0E-06 GAGCACGCCCGGACAAGCAC 20 V_ETS1_B_M00339 TRANSFAC + 131672872 131672886 1.0E-06 AGAGGAAGTGCCTGA 15 V_P63_01_M01656 TRANSFAC + 131669738 131669757 1.0E-05 GTGCTTGTCCGGGCGTGCTC 20 V_SRF_06_M02916 TRANSFAC - 131669249 131669265 4.0E-06 GGGGAAAAAAAATCTAA 17 V_HOXD8_01_M01432 TRANSFAC - 131673024 131673040 7.0E-06 TGTGTAATTACTGGTTT 17 V_PR_02_M00957 TRANSFAC - 131670374 131670400 2.0E-06 GGGGGGACTATTGAATGTTCTTTTGGG 27 V_TAACC_B_M00331 TRANSFAC - 131669716 131669738 9.0E-06 CAGAGAACTGTGCAACTGCAAGT 23 V_PBX1_04_M01357 TRANSFAC + 131673034 131673050 1.0E-06 TTACACATCAAAGTATG 17 V_TCF3_05_M02920 TRANSFAC - 131669252 131669266 1.0E-06 GGGGGAAAAAAAATC 15 V_TCF3_05_M02920 TRANSFAC - 131669253 131669267 2.0E-06 TGGGGGAAAAAAAAT 15 V_IPF1_03_M01235 TRANSFAC + 131673028 131673037 7.0E-06 CAGTAATTAC 10 V_DMRT1_01_M01146 TRANSFAC - 131670402 131670416 9.0E-06 CTGAAACTTTGCATA 15 V_AR_Q6_M00962 TRANSFAC - 131673048 131673056 6.0E-06 TGAGCACAT 9 V_FOXK1_03_M02752 TRANSFAC - 131669271 131669287 3.0E-06 TCAATGAAAACAAAAGC 17 V_SMAD1_01_M01590 TRANSFAC - 131669271 131669282 4.0E-06 GAAAACAAAAGC 12 V_SPIB_03_M02076 TRANSFAC + 131672872 131672881 3.0E-06 AGAGGAAGTG 10 V_NF1_Q6_M00193 TRANSFAC - 131669295 131669312 4.0E-06 TTTTGGCAAGAGGCCTCC 18 V_HOXC9_01_M01416 TRANSFAC - 131669697 131669712 7.0E-06 TGCTGTCATTAACCAG 16 V_HOXC8_01_M01321 TRANSFAC - 131673027 131673042 7.0E-06 GATGTGTAATTACTGG 16 V_TCF4_01_M01705 TRANSFAC - 131673039 131673047 7.0E-06 ACTTTGATG 9

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.