Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

DUXA Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 503835 double homeobox A chr19 - 57678356 - 57683856 57678856 DUXA_homeodomain_DBD_dimeric_13_1 Transcription Factor Binding Sites   Download all TFBS in the DUXA promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints PITX3_homeodomain_DBD_monomeric_9_1 SELEX - 57683753 57683761 5.0E-06 CTTAATCCC 9 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 57683570 57683580 1.0E-05 GCCCCGCCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 57683587 57683597 1.0E-05 GCCCCGCCCCC 11 Mafb_bZIP_DBD_monomeric_12_1 SELEX + 57677441 57677452 9.0E-06 GTAATGCTGACG 12 PITX1_homeodomain_full_monomeric_8_1 SELEX - 57683753 57683760 1.0E-05 TTAATCCC 8 SP1_MA0079.2 JASPAR - 57683570 57683579 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 57683587 57683596 7.0E-06 CCCCGCCCCC 10 RHOXF1_homeodomain_full_monomeric_8_1 SELEX - 57683753 57683760 1.0E-05 TTAATCCC 8 MGA_TBX_DBD_dimeric_18_1 SELEX + 57677347 57677364 1.0E-05 AGGGGTGAGGTCACAGTT 18 CREB3L1_bZIP_full_dimeric_14_1 SELEX + 57683234 57683247 6.0E-06 CTGCCACGTCTGCC 14 GSC2_homeodomain_DBD_monomeric_10_1 SELEX - 57683752 57683761 2.0E-06 CTTAATCCCC 10 MAFK_bZIP_full_monomeric_12_1 SELEX + 57677440 57677451 3.0E-06 AGTAATGCTGAC 12 Irx3_homeodomain_DBD_dimeric_12_1 SELEX + 57677404 57677415 7.0E-06 TAACATGAACAA 12 V_CEBPG_Q6_M00622 TRANSFAC - 57677509 57677521 3.0E-06 CTTATGTCAAATA 13 V_NRSF_Q4_M01028 TRANSFAC + 57683609 57683627 8.0E-06 GTCCTCTCCGCGGCGCTCA 19 V_SP1_Q6_01_M00931 TRANSFAC + 57683571 57683580 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 57683588 57683597 4.0E-06 GGGGCGGGGC 10 V_ZTA_Q2_M00711 TRANSFAC - 57677438 57677450 8.0E-06 TCAGCATTACTCA 13 V_SP1_03_M02281 TRANSFAC - 57683570 57683579 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 57683587 57683596 7.0E-06 CCCCGCCCCC 10 V_PPAR_DR1_Q2_M00763 TRANSFAC - 57677354 57677366 9.0E-06 AGAACTGTGACCT 13 V_SP4_03_M02810 TRANSFAC - 57683565 57683581 9.0E-06 CGCCCCGCCCCCTCGCG 17 V_SP4_03_M02810 TRANSFAC - 57683582 57683598 9.0E-06 CGCCCCGCCCCCTCGCG 17 V_IRX4_01_M01410 TRANSFAC - 57677400 57677416 3.0E-06 TTTGTTCATGTTATACT 17 V_SP1_Q6_M00196 TRANSFAC + 57683569 57683581 0.0E+00 AGGGGGCGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC + 57683586 57683598 0.0E+00 AGGGGGCGGGGCG 13 V_NKX22_02_M01372 TRANSFAC - 57677318 57677334 9.0E-06 CTTGCCACTTGAGTCTT 17 V_NKX25_Q5_M01043 TRANSFAC - 57677323 57677332 3.0E-06 TGCCACTTGA 10 V_PPARG_03_M00528 TRANSFAC - 57683244 57683260 7.0E-06 AAGCCGGTAAAAGGGCA 17 V_PAX8_01_M00717 TRANSFAC + 57677428 57677442 7.0E-06 CATTAGAGAGTGAGT 15 V_SOX11_03_M02795 TRANSFAC + 57677406 57677422 2.0E-06 ACATGAACAAAGGCTTG 17 V_IRX5_01_M01472 TRANSFAC - 57677400 57677416 9.0E-06 TTTGTTCATGTTATACT 17 V_PAX8_B_M00328 TRANSFAC + 57677427 57677444 6.0E-06 ACATTAGAGAGTGAGTAA 18 V_SP4_Q5_M01273 TRANSFAC - 57683570 57683580 1.0E-06 GCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 57683587 57683597 1.0E-06 GCCCCGCCCCC 11 V_IRX3_02_M01485 TRANSFAC - 57677400 57677416 3.0E-06 TTTGTTCATGTTATACT 17 V_E2_01_M00107 TRANSFAC - 57683251 57683266 6.0E-06 GCACCCAAGCCGGTAA 16 V_T3R_01_M00239 TRANSFAC + 57677349 57677364 5.0E-06 GGGTGAGGTCACAGTT 16 V_NKX25_03_M01414 TRANSFAC - 57677319 57677334 6.0E-06 CTTGCCACTTGAGTCT 16 V_E2_Q6_01_M00928 TRANSFAC + 57683250 57683265 3.0E-06 TTTACCGGCTTGGGTG 16 V_TITF1_Q3_M00432 TRANSFAC + 57677321 57677330 4.0E-06 ACTCAAGTGG 10 V_LEF1TCF1_Q4_M00978 TRANSFAC - 57677408 57677418 7.0E-06 CCTTTGTTCAT 11 V_SOX4_01_M01308 TRANSFAC + 57677411 57677418 1.0E-05 AACAAAGG 8 V_SP1_Q2_01_M00933 TRANSFAC - 57683570 57683579 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC - 57683587 57683596 4.0E-06 CCCCGCCCCC 10 V_SP1_Q4_01_M00932 TRANSFAC + 57683569 57683581 0.0E+00 AGGGGGCGGGGCG 13 V_SP1_Q4_01_M00932 TRANSFAC + 57683586 57683598 0.0E+00 AGGGGGCGGGGCG 13 V_IRXB3_01_M01377 TRANSFAC - 57677400 57677416 7.0E-06 TTTGTTCATGTTATACT 17 V_SEF1_C_M00214 TRANSFAC + 57683729 57683747 5.0E-06 TGGCCCGAGACCTGCGGTC 19 V_SMAD1_01_M01590 TRANSFAC + 57677408 57677419 6.0E-06 ATGAACAAAGGC 12

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.