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NTF3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 4908 neurotrophin 3 chr12 + 5536279 - 5541779 5541279 Transcription Factor Binding Sites   Download all TFBS in the NTF3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NKX2-8_homeodomain_full_monomeric_9_1 SELEX - 5537497 5537505 8.0E-06 GCACTTGAA 9 FOXJ2_forkhead_DBD_monomeric_8_1 SELEX - 5542983 5542990 5.0E-06 ATAAACAA 8 Zfp652_C2H2_DBD_monomeric_13_1 SELEX - 5539261 5539273 1.0E-06 GGAAGGGGTTAAA 13 Zfp652_C2H2_DBD_monomeric_13_1 SELEX + 5541197 5541209 4.0E-06 GGAAGGGGTTAAG 13 FOXF2_MA0030.1 JASPAR - 5542982 5542995 2.0E-06 CACACATAAACAAG 14 FOXL1_forkhead_full_dimeric_13_1 SELEX + 5543116 5543128 6.0E-06 TTTAAATAAAGAG 13 CEBPA_MA0102.2 JASPAR - 5538109 5538117 4.0E-06 TTTTGCAAT 9 Lhx8_homeodomain_DBD_dimeric_12_1 SELEX + 5538987 5538998 4.0E-06 TGATTGCAAGCA 12 Lhx8_homeodomain_DBD_dimeric_12_1 SELEX - 5538987 5538998 5.0E-06 TGCTTGCAATCA 12 EWSR1-FLI1_MA0149.1 JASPAR - 5538892 5538909 5.0E-06 GGACTGAGGGAAGGAGGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 5538896 5538913 7.0E-06 GGAGGGACTGAGGGAAGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 5538908 5538925 1.0E-06 GGAGAGAGGGGAGGAGGG 18 EWSR1-FLI1_MA0149.1 JASPAR - 5539139 5539156 9.0E-06 GAAGAAAAGGCAGCAAGC 18 EWSR1-FLI1_MA0149.1 JASPAR - 5539154 5539171 1.0E-06 AGAAGAAAGGAAGGAGAA 18 Pknox2_MEIS_DBD_dimeric_12_1 SELEX - 5538960 5538971 9.0E-06 TGAGAGGTGACA 12 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 5538960 5538971 8.0E-06 TGAGAGGTGACA 12 ESR1_MA0112.2 JASPAR + 5544477 5544496 7.0E-06 GGGGCATGGCACACTGCCCT 20 SP1_MA0079.2 JASPAR + 5539199 5539208 9.0E-06 CCCCTCCTCC 10 SP1_MA0079.2 JASPAR - 5542140 5542149 3.0E-06 CCCCTCCCCC 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 5537629 5537638 9.0E-06 AGCAGCTGTC 10 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 5543117 5543127 7.0E-06 TTAAATAAAGA 11 Gata1_MA0035.2 JASPAR + 5538115 5538125 8.0E-06 AAAGATAAGGG 11 Evi1_MA0029.1 JASPAR + 5538032 5538045 8.0E-06 TTCACAAGATAAAG 14 Pou5f1_MA0142.1 JASPAR - 5539106 5539120 7.0E-06 ATTTGTTCTGCAGAT 15 LHX6_homeodomain_full_dimeric_12_1 SELEX - 5538987 5538998 1.0E-06 TGCTTGCAATCA 12 MEIS2_MEIS_DBD_dimeric_14_1 SELEX - 5538959 5538972 6.0E-06 ATGAGAGGTGACAC 14 GLIS3_C2H2_DBD_monomeric_14_1 SELEX - 5540737 5540750 8.0E-06 CACCCCCTACCAAG 14 Foxj3_forkhead_DBD_monomeric_8_1 SELEX - 5542983 5542990 5.0E-06 ATAAACAA 8 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 5542984 5542996 2.0E-06 ACACACATAAACA 13 V_E2A_Q6_01_M02088 TRANSFAC - 5537627 5537639 8.0E-06 AGACAGCTGCTAG 13 V_STAT5A_Q6_M01890 TRANSFAC - 5538834 5538846 1.0E-06 CTTTTTCTCAGAA 13 V_GATA1_Q6_M02004 TRANSFAC + 5538112 5538126 7.0E-06 GCAAAAGATAAGGGT 15 V_TCFE2A_04_M02927 TRANSFAC - 5541220 5541236 3.0E-06 CCGGCCAGATGGCTCCG 17 V_ATF5_01_M01295 TRANSFAC + 5541290 5541300 7.0E-06 CCTCTCCCTTC 11 V_XFD1_01_M00267 TRANSFAC - 5542980 5542993 5.0E-06 CACATAAACAAGTC 14 V_GATA2_02_M00348 TRANSFAC + 5538115 5538124 9.0E-06 AAAGATAAGG 10 V_ESR1_01_M02261 TRANSFAC + 5544477 5544496 7.0E-06 GGGGCATGGCACACTGCCCT 20 V_CEBP_Q3_M00770 TRANSFAC - 5538109 5538120 7.0E-06 ATCTTTTGCAAT 12 V_CEBP_Q3_M00770 TRANSFAC + 5538941 5538952 8.0E-06 ATATTTGGCAAG 12 V_PAX4_03_M00378 TRANSFAC - 5540997 5541008 4.0E-06 AACCCCCACCCT 12 V_ZEC_01_M01081 TRANSFAC + 5542914 5542926 5.0E-06 GAATGGAGGTTGC 13 V_POU5F1_02_M02245 TRANSFAC - 5539106 5539120 7.0E-06 ATTTGTTCTGCAGAT 15 V_DR4_Q2_M00965 TRANSFAC - 5541003 5541019 9.0E-06 TATTCTTCAGTAACCCC 17 V_P53_DECAMER_Q2_M00761 TRANSFAC - 5542979 5542988 7.0E-06 AAACAAGTCC 10 V_SP1_03_M02281 TRANSFAC + 5539199 5539208 9.0E-06 CCCCTCCTCC 10 V_SP1_03_M02281 TRANSFAC - 5542140 5542149 3.0E-06 CCCCTCCCCC 10 V_SP1_02_M01303 TRANSFAC + 5540745 5540755 5.0E-06 GGGGTGGGGAG 11 V_HTF_01_M00538 TRANSFAC + 5538051 5538074 9.0E-06 ATTCAATCCCACGTTGCCGTTTTG 24 V_PU1_Q4_M01172 TRANSFAC + 5539151 5539169 5.0E-06 TTCTTCTCCTTCCTTTCTT 19 V_ZFP281_05_M02935 TRANSFAC - 5538168 5538184 2.0E-06 TGAAAACCCCCTTTAAA 17 V_FOXP3_01_M01599 TRANSFAC - 5542983 5542990 5.0E-06 ATAAACAA 8 V_CEBPB_01_M00109 TRANSFAC - 5538107 5538120 9.0E-06 ATCTTTTGCAATAG 14 V_CEBPB_01_M00109 TRANSFAC + 5538941 5538954 5.0E-06 ATATTTGGCAAGAT 14 V_MEF2A_Q6_M02024 TRANSFAC - 5543114 5543123 4.0E-06 TATTTAAAAA 10 V_TAL1_GATA1_01_M02243 TRANSFAC + 5538027 5538044 5.0E-06 CTGTTTTCACAAGATAAA 18 V_WT1_Q6_01_M02036 TRANSFAC - 5543002 5543011 4.0E-06 CGCCCCCGCC 10 V_CP2_02_M00947 TRANSFAC + 5541241 5541255 7.0E-06 GCTGGTTATAACCGC 15 V_ZNF219_01_M01122 TRANSFAC - 5542135 5542146 7.0E-06 CTCCCCCCAGCC 12 V_LMX1_01_M01409 TRANSFAC - 5543112 5543128 4.0E-06 CTCTTTATTTAAAAAGC 17 V_ZFP105_03_M02827 TRANSFAC + 5538180 5538194 6.0E-06 TTTCAAAAACAAGAT 15 V_FOXO1_02_M00474 TRANSFAC + 5542980 5542993 7.0E-06 GACTTGTTTATGTG 14 V_HNF3G_Q4_M02015 TRANSFAC + 5540363 5540370 7.0E-06 TGTTTGTT 8 V_KROX_Q6_M00982 TRANSFAC - 5543000 5543013 2.0E-06 CTCGCCCCCGCCTC 14 V_MAZ_Q6_01_M02023 TRANSFAC - 5539198 5539211 4.0E-06 GAGGGAGGAGGGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC + 5540744 5540757 7.0E-06 GGGGGTGGGGAGAG 14 V_ISRE_01_M00258 TRANSFAC - 5539358 5539372 1.0E-06 CAGTTTCAGATCCAC 15 Tal1_Gata1_MA0140.1 JASPAR + 5538027 5538044 5.0E-06 CTGTTTTCACAAGATAAA 18 V_SOX12_04_M02900 TRANSFAC - 5542981 5542996 9.0E-06 ACACACATAAACAAGT 16 V_GATA1_09_M02254 TRANSFAC + 5538115 5538125 8.0E-06 AAAGATAAGGG 11 V_HFH1_01_M00129 TRANSFAC + 5542981 5542992 8.0E-06 ACTTGTTTATGT 12 V_STAT4_Q5_M02117 TRANSFAC + 5538834 5538843 5.0E-06 TTCTGAGAAA 10 V_ARID3A_04_M02735 TRANSFAC - 5543112 5543128 6.0E-06 CTCTTTATTTAAAAAGC 17 V_TBP_06_M02814 TRANSFAC + 5543112 5543127 2.0E-06 GCTTTTTAAATAAAGA 16 V_TBP_06_M02814 TRANSFAC - 5543112 5543127 2.0E-06 TCTTTATTTAAAAAGC 16 V_FOXO1_Q5_M01216 TRANSFAC + 5538184 5538192 8.0E-06 AAAAACAAG 9 V_EVI1_06_M00011 TRANSFAC + 5538035 5538043 2.0E-06 ACAAGATAA 9 V_NEUROD_02_M01288 TRANSFAC + 5537628 5537639 5.0E-06 TAGCAGCTGTCT 12 V_FREAC2_01_M00290 TRANSFAC - 5542980 5542995 5.0E-06 CACACATAAACAAGTC 16 V_HFH8_01_M00294 TRANSFAC + 5542981 5542993 1.0E-06 ACTTGTTTATGTG 13 V_MYOD_Q6_02_M02100 TRANSFAC + 5537631 5537639 8.0E-06 CAGCTGTCT 9 V_MYF6_04_M02885 TRANSFAC + 5538998 5539012 1.0E-06 AAAGACAGACCCACC 15 V_TAL1_01_M01591 TRANSFAC + 5539144 5539156 8.0E-06 CTGCCTTTTCTTC 13 V_TAL1_01_M01591 TRANSFAC + 5541346 5541358 0.0E+00 CTTTCTTCTCTCT 13 V_CEBPA_01_M00116 TRANSFAC + 5538107 5538120 3.0E-06 CTATTGCAAAAGAT 14 V_GATA1_04_M00128 TRANSFAC + 5538114 5538126 3.0E-06 AAAAGATAAGGGT 13 V_PXR_Q2_M00964 TRANSFAC - 5537534 5537545 9.0E-06 AGGGTCAGGAAA 12 V_GATA6_01_M00462 TRANSFAC + 5538115 5538124 3.0E-06 AAAGATAAGG 10 V_LMX1B_01_M01363 TRANSFAC + 5543112 5543128 6.0E-06 GCTTTTTAAATAAAGAG 17 V_FPM315_01_M01587 TRANSFAC - 5538908 5538919 4.0E-06 AGGGGAGGAGGG 12 V_FPM315_01_M01587 TRANSFAC - 5539200 5539211 0.0E+00 GAGGGAGGAGGG 12 V_MTATA_B_M00320 TRANSFAC - 5538160 5538176 1.0E-05 CCCTTTAAAACTCTCTC 17 V_ZFP281_01_M01597 TRANSFAC + 5540743 5540753 5.0E-06 AGGGGGTGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 5542139 5542149 2.0E-06 GGGGGGAGGGG 11 V_CEBPB_Q6_M01896 TRANSFAC - 5538108 5538117 4.0E-06 TTTTGCAATA 10 V_SRF_Q4_M00810 TRANSFAC + 5538938 5538955 4.0E-06 CACATATTTGGCAAGATT 18 V_PBX_Q3_M00998 TRANSFAC - 5538047 5538058 4.0E-06 GATTGAATTTTG 12 V_EWSR1FLI1_01_M02252 TRANSFAC - 5538892 5538909 5.0E-06 GGACTGAGGGAAGGAGGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 5538896 5538913 7.0E-06 GGAGGGACTGAGGGAAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 5538908 5538925 1.0E-06 GGAGAGAGGGGAGGAGGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 5539139 5539156 9.0E-06 GAAGAAAAGGCAGCAAGC 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 5539154 5539171 1.0E-06 AGAAGAAAGGAAGGAGAA 18 V_FOXO1_01_M00473 TRANSFAC + 5538183 5538192 9.0E-06 CAAAAACAAG 10 V_FOXO1_01_M00473 TRANSFAC - 5542982 5542991 2.0E-06 CATAAACAAG 10 V_NFE2_01_M00037 TRANSFAC - 5543076 5543086 9.0E-06 AGCTGAGTTAC 11 V_HNF3B_Q6_M02014 TRANSFAC + 5540362 5540370 1.0E-05 TTGTTTGTT 9 V_DR3_Q4_M00966 TRANSFAC + 5541779 5541799 8.0E-06 GGACACCCTTCTCCACCTCCT 21 V_FOXO4_01_M00472 TRANSFAC - 5542980 5542990 1.0E-06 ATAAACAAGTC 11 V_GATA1_02_M00126 TRANSFAC + 5538113 5538126 2.0E-06 CAAAAGATAAGGGT 14 V_GATA6_04_M02757 TRANSFAC + 5538112 5538128 7.0E-06 GCAAAAGATAAGGGTAA 17 V_TAACC_B_M00331 TRANSFAC + 5538114 5538136 7.0E-06 AAAAGATAAGGGTAACCAGAAGG 23 V_GLIS2_04_M02863 TRANSFAC - 5543112 5543125 9.0E-06 TTTATTTAAAAAGC 14 V_GLIS2_04_M02863 TRANSFAC + 5543114 5543127 6.0E-06 TTTTTAAATAAAGA 14 V_SMAD1_01_M01590 TRANSFAC - 5539161 5539172 3.0E-06 CAGAAGAAAGGA 12 V_CEBPA_Q6_M01866 TRANSFAC - 5538108 5538120 1.0E-06 ATCTTTTGCAATA 13 V_NANOG_02_M01247 TRANSFAC - 5539157 5539176 3.0E-06 AAATCAGAAGAAAGGAAGGA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.