Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

NPY1R Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 4886 neuropeptide Y receptor Y1 chr4 - 164253447 - 164258947 164253947 Transcription Factor Binding Sites   Download all TFBS in the NPY1R promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 164254065 164254083 0.0E+00 CGGCCACAAGATGGCACTG 19 IRF7_IRF_DBD_dimeric_14_1 SELEX - 164254184 164254197 7.0E-06 AAGAAAGCAAAAGA 14 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 164254044 164254060 3.0E-06 GCAAACAAAGAAAAGCA 17 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX + 164253801 164253810 1.0E-06 ATCACGTGAC 10 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX - 164253801 164253810 6.0E-06 GTCACGTGAT 10 FOXC1_forkhead_DBD_monomeric_11_1 SELEX - 164254178 164254188 7.0E-06 AAAGAAAATAT 11 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 164254173 164254186 2.0E-06 CACTAATATTTTCT 14 Tcfcp2l1_MA0145.1 JASPAR + 164254113 164254126 0.0E+00 CCAGCCCAAACCAG 14 USF1_bHLH_DBD_dimeric_10_1 SELEX + 164253801 164253810 1.0E-06 ATCACGTGAC 10 USF1_bHLH_DBD_dimeric_10_1 SELEX - 164253801 164253810 2.0E-06 GTCACGTGAT 10 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 164254173 164254186 3.0E-06 CACTAATATTTTCT 14 BHLHE41_bHLH_full_dimeric_10_1 SELEX + 164253801 164253810 2.0E-06 ATCACGTGAC 10 BHLHE41_bHLH_full_dimeric_10_1 SELEX - 164253801 164253810 3.0E-06 GTCACGTGAT 10 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX + 164254327 164254340 8.0E-06 AATGCATTAAGTCA 14 SREBF2_bHLH_DBD_dimeric_10_1 SELEX + 164253801 164253810 1.0E-06 ATCACGTGAC 10 SREBF2_bHLH_DBD_dimeric_10_1 SELEX - 164253801 164253810 2.0E-06 GTCACGTGAT 10 Bhlhb2_bHLH_DBD_monomeric_10_1 SELEX + 164253801 164253810 1.0E-06 ATCACGTGAC 10 SOX14_HMG_DBD_dimeric_13_1 SELEX - 164254424 164254436 2.0E-06 AAAATTGCATTGA 13 Srebf1_bHLH_DBD_dimeric_10_1 SELEX + 164253801 164253810 1.0E-06 ATCACGTGAC 10 Srebf1_bHLH_DBD_dimeric_10_1 SELEX - 164253801 164253810 2.0E-06 GTCACGTGAT 10 TFEB_bHLH_full_dimeric_10_1 SELEX + 164253801 164253810 1.0E-06 ATCACGTGAC 10 TFEB_bHLH_full_dimeric_10_1 SELEX - 164253801 164253810 5.0E-06 GTCACGTGAT 10 CTCF_C2H2_full_monomeric_17_1 SELEX + 164254066 164254082 1.0E-06 AGTGCCATCTTGTGGCC 17 PBX1_MA0070.1 JASPAR - 164253742 164253753 7.0E-06 TCATCAATCTTT 12 Foxd3_MA0041.1 JASPAR + 164254176 164254187 9.0E-06 TAATATTTTCTT 12 MLXIPL_bHLH_full_dimeric_10_1 SELEX + 164253801 164253810 5.0E-06 ATCACGTGAC 10 MLXIPL_bHLH_full_dimeric_10_1 SELEX - 164253801 164253810 1.0E-06 GTCACGTGAT 10 GSC_homeodomain_full_monomeric_10_1 SELEX + 164253971 164253980 8.0E-06 CCTAATCCCC 10 MAX_MA0058.1 JASPAR + 164253800 164253809 8.0E-06 GATCACGTGA 10 TFE3_bHLH_DBD_dimeric_10_1 SELEX + 164253801 164253810 1.0E-06 ATCACGTGAC 10 TFE3_bHLH_DBD_dimeric_10_1 SELEX - 164253801 164253810 9.0E-06 GTCACGTGAT 10 TFEC_bHLH_DBD_dimeric_10_1 SELEX + 164253801 164253810 2.0E-06 ATCACGTGAC 10 TFEC_bHLH_DBD_dimeric_10_1 SELEX - 164253801 164253810 4.0E-06 GTCACGTGAT 10 Tp53_p53l_DBD_dimeric_17_1 SELEX - 164252345 164252361 5.0E-06 ACAGGCAGGGGACATGT 17 GSC2_homeodomain_DBD_monomeric_10_1 SELEX + 164253971 164253980 7.0E-06 CCTAATCCCC 10 MLX_bHLH_full_dimeric_10_1 SELEX + 164253801 164253810 2.0E-06 ATCACGTGAC 10 MLX_bHLH_full_dimeric_10_1 SELEX - 164253801 164253810 1.0E-06 GTCACGTGAT 10 ARNTL_bHLH_DBD_dimeric_10_1 SELEX + 164253801 164253810 3.0E-06 ATCACGTGAC 10 ARNTL_bHLH_DBD_dimeric_10_1 SELEX - 164253801 164253810 2.0E-06 GTCACGTGAT 10 BHLHB3_bHLH_full_dimeric_10_1 SELEX + 164253801 164253810 3.0E-06 ATCACGTGAC 10 RREB1_MA0073.1 JASPAR + 164253838 164253857 8.0E-06 CCCCCAACCCCACAAACACC 20 RREB1_MA0073.1 JASPAR + 164253839 164253858 9.0E-06 CCCCAACCCCACAAACACCT 20 RREB1_MA0073.1 JASPAR + 164253842 164253861 6.0E-06 CAACCCCACAAACACCTCAC 20 V_FOXP1_01_M00987 TRANSFAC + 164254178 164254197 3.0E-06 ATATTTTCTTTTGCTTTCTT 20 V_FOXP1_01_M00987 TRANSFAC + 164254182 164254201 6.0E-06 TTTCTTTTGCTTTCTTTTGT 20 V_FOXP3_Q4_M00992 TRANSFAC + 164252378 164252394 2.0E-06 GTCATGCTTTCTCATAG 17 V_USF_Q6_M00187 TRANSFAC - 164253801 164253810 7.0E-06 GTCACGTGAT 10 V_ARNT_02_M00539 TRANSFAC + 164253796 164253815 8.0E-06 CCCGGATCACGTGACGGCGT 20 V_ARNT_02_M00539 TRANSFAC - 164253796 164253815 8.0E-06 ACGCCGTCACGTGATCCGGG 20 V_HMGIY_Q3_M01010 TRANSFAC - 164254320 164254334 1.0E-05 AATGCATTTTCTCAG 15 V_HMGIY_Q3_M01010 TRANSFAC + 164254426 164254440 2.0E-06 AATGCAATTTTCTCG 15 V_FOXD3_01_M00130 TRANSFAC + 164254176 164254187 9.0E-06 TAATATTTTCTT 12 V_TCF4_Q5_01_M02033 TRANSFAC + 164254129 164254138 4.0E-06 ATCAAAGGGC 10 V_MEF2_02_M00231 TRANSFAC + 164254467 164254488 6.0E-06 TATGAAGAAAAAAATAGAATGT 22 V_IRF2_Q6_M01882 TRANSFAC - 164254182 164254197 1.0E-05 AAGAAAGCAAAAGAAA 16 V_GTF2IRD1_01_M01229 TRANSFAC - 164253971 164253979 7.0E-06 GGGATTAGG 9 V_ATF3_Q6_01_M01863 TRANSFAC + 164254332 164254342 6.0E-06 ATTAAGTCAGA 11 V_YY1_Q6_M00793 TRANSFAC + 164254069 164254077 7.0E-06 GCCATCTTG 9 V_PAX3_B_M00327 TRANSFAC + 164254193 164254213 2.0E-06 TTCTTTTGTGACGCTCAAATA 21 V_TCFAP2E_04_M02926 TRANSFAC + 164254469 164254482 3.0E-06 TGAAGAAAAAAATA 14 V_ELF4_04_M02850 TRANSFAC - 164254368 164254384 1.0E-05 TCCCCTAAAAAAACTAA 17 V_OCT1_02_M00136 TRANSFAC + 164254322 164254336 9.0E-06 GAGAAAATGCATTAA 15 V_ZFP105_03_M02827 TRANSFAC - 164254362 164254376 9.0E-06 AAAAACTAAAAAGCA 15 V_SREBP1_01_M00220 TRANSFAC + 164253800 164253810 1.0E-06 GATCACGTGAC 11 V_SREBP1_01_M00220 TRANSFAC - 164253801 164253811 4.0E-06 CGTCACGTGAT 11 V_ZBTB7B_04_M02930 TRANSFAC - 164254404 164254420 3.0E-06 TTTTCGACCACCAGGGA 17 V_HOXA3_07_M02869 TRANSFAC + 164254325 164254338 5.0E-06 AAAATGCATTAAGT 14 V_IRF3_Q3_M01279 TRANSFAC + 164254182 164254194 1.0E-06 TTTCTTTTGCTTT 13 V_SOX_Q6_M01014 TRANSFAC + 164254049 164254061 5.0E-06 TTCTTTGTTTGCA 13 V_SOX_Q6_M01014 TRANSFAC - 164254256 164254268 6.0E-06 CTCTTTGTTCACT 13 V_TATA_C_M00216 TRANSFAC + 164254273 164254282 6.0E-06 CCTTTAAAAA 10 V_USF_01_M00121 TRANSFAC + 164253799 164253812 8.0E-06 GGATCACGTGACGG 14 V_USF_01_M00121 TRANSFAC - 164253799 164253812 8.0E-06 CCGTCACGTGATCC 14 V_WHN_B_M00332 TRANSFAC - 164254418 164254428 4.0E-06 ATTGACGCTTT 11 V_RREB1_01_M00257 TRANSFAC + 164253839 164253852 4.0E-06 CCCCAACCCCACAA 14 V_CTCF_02_M01259 TRANSFAC - 164254067 164254086 0.0E+00 CTTCGGCCACAAGATGGCAC 20 V_OCT4_02_M01124 TRANSFAC - 164254274 164254288 4.0E-06 TTTGACTTTTTAAAG 15 V_SOX11_03_M02795 TRANSFAC + 164254255 164254271 8.0E-06 AAGTGAACAAAGAGAAG 17 V_CTCF_01_M01200 TRANSFAC - 164254065 164254084 0.0E+00 TCGGCCACAAGATGGCACTG 20 V_MTF1_06_M02882 TRANSFAC + 164254467 164254480 8.0E-06 TATGAAGAAAAAAA 14 V_POU5F1_01_M01307 TRANSFAC + 164254426 164254435 9.0E-06 AATGCAATTT 10 V_STRA13_01_M00985 TRANSFAC - 164253799 164253812 1.0E-06 CCGTCACGTGATCC 14 V_MYOD_Q6_01_M00929 TRANSFAC - 164253124 164253141 5.0E-06 CCGCGGCAGGTGTCGGGC 18 V_TFEB_01_M01768 TRANSFAC + 164253801 164253810 2.0E-06 ATCACGTGAC 10 V_TFEB_01_M01768 TRANSFAC - 164253801 164253810 2.0E-06 GTCACGTGAT 10 V_FOXL1_02_M02857 TRANSFAC - 164254179 164254194 4.0E-06 AAAGCAAAAGAAAATA 16 V_ASCL2_04_M02841 TRANSFAC - 164252390 164252405 7.0E-06 CACTCCCCATCCTATG 16 V_HSF_Q6_M00641 TRANSFAC + 164254013 164254025 6.0E-06 TTCCCGAGGCTTG 13 V_SRF_06_M02916 TRANSFAC - 164254365 164254381 1.0E-05 CCTAAAAAAACTAAAAA 17 V_SRF_06_M02916 TRANSFAC + 164254466 164254482 4.0E-06 TTATGAAGAAAAAAATA 17 V_SRF_06_M02916 TRANSFAC + 164254470 164254486 7.0E-06 GAAGAAAAAAATAGAAT 17 V_E2F_01_M00024 TRANSFAC - 164254430 164254444 6.0E-06 TCACCGAGAAAATTG 15 V_CP2_01_M00072 TRANSFAC + 164254116 164254126 9.0E-06 GCCCAAACCAG 11 V_MAFK_04_M02880 TRANSFAC - 164254425 164254439 0.0E+00 GAGAAAATTGCATTG 15 V_TCF11MAFG_01_M00284 TRANSFAC - 164252376 164252397 1.0E-05 ATCCTATGAGAAAGCATGACGG 22 V_SOX9_Q4_M01284 TRANSFAC - 164254048 164254058 3.0E-06 AAACAAAGAAA 11 V_SOX9_Q4_M01284 TRANSFAC + 164254128 164254138 6.0E-06 AATCAAAGGGC 11 V_NANOG_02_M01247 TRANSFAC - 164254185 164254204 7.0E-06 GTCACAAAAGAAAGCAAAAG 20 V_NANOG_02_M01247 TRANSFAC + 164254253 164254272 8.0E-06 ATAAGTGAACAAAGAGAAGA 20 V_NANOG_02_M01247 TRANSFAC + 164254276 164254295 6.0E-06 TTAAAAAGTCAAAGCAGTCA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.