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NOVA2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 4858 neuro-oncological ventral antigen 2 chr19 - 46476157 - 46481657 46476657 Transcription Factor Binding Sites   Download all TFBS in the NOVA2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 46479369 46479381 4.0E-06 GTAAACACACACA 13 SP3_C2H2_DBD_monomeric_11_1 SELEX + 46477397 46477407 1.0E-05 GCCACGCCCCT 11 TBX1_TBX_DBD_dimeric_20_2 SELEX + 46475374 46475393 6.0E-06 TACACACAGCTGGGTGTCAT 20 TBX1_TBX_DBD_dimeric_20_2 SELEX + 46475536 46475555 3.0E-06 TGCACACCTCCATGTGTCAC 20 TBX1_TBX_DBD_dimeric_20_2 SELEX - 46475536 46475555 1.0E-06 GTGACACATGGAGGTGTGCA 20 ZNF306_C2H2_full_monomeric_14_1 SELEX + 46477357 46477370 4.0E-06 TGGTCCAGCCTTGA 14 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 46477397 46477407 7.0E-06 GCCACGCCCCT 11 RFX4_RFX_DBD_dimeric_16_1 SELEX - 46478833 46478848 2.0E-06 CATCTCCATGGCAACC 16 RFX4_RFX_DBD_dimeric_16_1 SELEX + 46479646 46479661 2.0E-06 TGCTGCCATGGCAACC 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 46479646 46479661 4.0E-06 GGTTGCCATGGCAGCA 16 RFX4_RFX_DBD_dimeric_16_1 SELEX + 46479672 46479687 4.0E-06 CATCACCATAGCAACC 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 46479672 46479687 9.0E-06 GGTTGCTATGGTGATG 16 KLF14_C2H2_DBD_monomeric_14_1 SELEX + 46477396 46477409 3.0E-06 GGCCACGCCCCTCC 14 ZNF435_C2H2_full_dimeric_18_1 SELEX + 46477497 46477514 3.0E-06 AACGTTTATTGAGCACTT 18 TBX20_TBX_DBD_dimeric_19_1 SELEX + 46475385 46475403 3.0E-06 GGGTGTCATATGCACACGT 19 TBX20_TBX_DBD_dimeric_19_1 SELEX - 46475385 46475403 2.0E-06 ACGTGTGCATATGACACCC 19 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX - 46477485 46477502 8.0E-06 AACGTTCATTCAAGGTGA 18 KLF13_C2H2_full_monomeric_18_1 SELEX + 46477395 46477412 5.0E-06 TGGCCACGCCCCTCCCGG 18 TBX1_TBX_DBD_dimeric_19_1 SELEX + 46475385 46475403 2.0E-06 GGGTGTCATATGCACACGT 19 TBX1_TBX_DBD_dimeric_19_1 SELEX - 46475385 46475403 2.0E-06 ACGTGTGCATATGACACCC 19 FOXK1_forkhead_DBD_putatively-multimeric_10_1 SELEX + 46479418 46479427 7.0E-06 CGCACACAAT 10 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 46478833 46478848 2.0E-06 GGTTGCCATGGAGATG 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 46479646 46479661 1.0E-06 TGCTGCCATGGCAACC 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 46479646 46479661 3.0E-06 GGTTGCCATGGCAGCA 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 46479672 46479687 1.0E-06 GGTTGCTATGGTGATG 16 SP4_C2H2_full_monomeric_17_1 SELEX + 46477394 46477410 1.0E-06 TTGGCCACGCCCCTCCC 17 HEY1_bHLH_DBD_dimeric_10_1 SELEX + 46475397 46475406 8.0E-06 CACACGTGCC 10 RFX2_RFX_DBD_dimeric_16_1 SELEX + 46478833 46478848 3.0E-06 GGTTGCCATGGAGATG 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 46478833 46478848 4.0E-06 CATCTCCATGGCAACC 16 RFX2_RFX_DBD_dimeric_16_1 SELEX + 46479646 46479661 2.0E-06 TGCTGCCATGGCAACC 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 46479646 46479661 2.0E-06 GGTTGCCATGGCAGCA 16 RFX2_RFX_DBD_dimeric_16_1 SELEX + 46479672 46479687 4.0E-06 CATCACCATAGCAACC 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 46479672 46479687 2.0E-06 GGTTGCTATGGTGATG 16 TBX20_TBX_full_dimeric_16_1 SELEX - 46479580 46479595 1.0E-06 GAGTGTGAGTGCGTGA 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 46478833 46478848 4.0E-06 CATCTCCATGGCAACC 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 46479646 46479661 1.0E-06 TGCTGCCATGGCAACC 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 46479646 46479661 1.0E-06 GGTTGCCATGGCAGCA 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 46479672 46479687 1.0E-06 CATCACCATAGCAACC 16 TBX15_TBX_DBD_dimeric_19_1 SELEX + 46475385 46475403 3.0E-06 GGGTGTCATATGCACACGT 19 TBX15_TBX_DBD_dimeric_19_1 SELEX - 46475385 46475403 4.0E-06 ACGTGTGCATATGACACCC 19 Klf12_C2H2_DBD_monomeric_15_1 SELEX + 46477333 46477347 3.0E-06 GGCCACGCCCTTCGG 15 Klf12_C2H2_DBD_monomeric_15_1 SELEX + 46477396 46477410 5.0E-06 GGCCACGCCCCTCCC 15 TBX21_TBX_full_dimeric_19_1 SELEX - 46475585 46475603 6.0E-06 TGACAAGAAAAGGGTGTGG 19 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 46479369 46479381 3.0E-06 GTAAACACACACA 13 V_MEQ_01_M02049 TRANSFAC + 46479372 46479380 7.0E-06 AACACACAC 9 V_MEQ_01_M02049 TRANSFAC + 46479381 46479389 7.0E-06 AACACACAC 9 V_MEQ_01_M02049 TRANSFAC + 46479462 46479470 2.0E-06 AACACACAT 9 V_FOXP1_01_M00987 TRANSFAC - 46479590 46479609 5.0E-06 TTGTGTTTGTGTGTGAGTGT 20 V_FOXP1_01_M00987 TRANSFAC - 46479594 46479613 5.0E-06 AGGTTTGTGTTTGTGTGTGA 20 V_TBX15_01_M01263 TRANSFAC + 46475385 46475403 2.0E-06 GGGTGTCATATGCACACGT 19 V_TBX15_01_M01263 TRANSFAC - 46475385 46475403 1.0E-06 ACGTGTGCATATGACACCC 19 V_SOX14_05_M02902 TRANSFAC + 46479418 46479432 6.0E-06 CGCACACAATAACTG 15 V_ZTA_Q2_M00711 TRANSFAC + 46475529 46475541 2.0E-06 TCACTGTTGCACA 13 V_RFX4_03_M02789 TRANSFAC - 46478831 46478845 5.0E-06 CTCCATGGCAACCAG 15 V_RFX4_03_M02789 TRANSFAC + 46479649 46479663 8.0E-06 TGCCATGGCAACCGC 15 V_RFX4_03_M02789 TRANSFAC + 46479675 46479689 0.0E+00 CACCATAGCAACCCA 15 V_GKLF_02_M01588 TRANSFAC + 46477334 46477345 1.0E-06 GCCACGCCCTTC 12 V_PITX2_Q6_M02114 TRANSFAC + 46472158 46472167 1.0E-06 TGTAATCCCA 10 V_AFP1_Q6_M00616 TRANSFAC + 46479425 46479435 5.0E-06 AATAACTGGAC 11 V_AIRE_02_M01000 TRANSFAC + 46472095 46472119 3.0E-06 GCTCTTAACCTGGTGATGTTGACTT 25 V_CACCCBINDINGFACTOR_Q6_M00721 TRANSFAC - 46475585 46475600 2.0E-06 CAAGAAAAGGGTGTGG 16 V_PU1_Q4_M01172 TRANSFAC + 46475423 46475441 6.0E-06 CATCCTTCCTTCTCCTTTT 19 V_GM497_04_M02864 TRANSFAC + 46475935 46475950 9.0E-06 ACACGCACACACATAC 16 V_GM497_04_M02864 TRANSFAC + 46479415 46479430 8.0E-06 TAACGCACACAATAAC 16 V_P53_02_M00272 TRANSFAC + 46479504 46479513 9.0E-06 AGGCATGCCT 10 V_P53_02_M00272 TRANSFAC - 46479504 46479513 9.0E-06 AGGCATGCCT 10 V_MEF2A_Q6_M02024 TRANSFAC + 46479623 46479632 1.0E-06 TATTTTTAAA 10 V_BARBIE_01_M00238 TRANSFAC - 46475430 46475444 1.0E-05 GTAAAAAGGAGAAGG 15 V_FREAC3_01_M00291 TRANSFAC + 46479364 46479379 3.0E-06 ATTGGGTAAACACACA 16 V_SOX7_04_M02911 TRANSFAC - 46479377 46479398 1.0E-05 TATCTAAATGTGTGTGTTGTGT 22 V_XFD3_01_M00269 TRANSFAC + 46479366 46479379 1.0E-05 TGGGTAAACACACA 14 V_KROX_Q6_M00982 TRANSFAC + 46479488 46479501 7.0E-06 TCAGCCCCCACCCC 14 V_MAZ_Q6_01_M02023 TRANSFAC + 46478757 46478770 9.0E-06 GGGGGATGGGAGGG 14 V_RFXDC2_03_M02790 TRANSFAC + 46479675 46479689 4.0E-06 CACCATAGCAACCCA 15 V_HBP1_03_M02762 TRANSFAC + 46477487 46477502 2.0E-06 ACCTTGAATGAACGTT 16 V_EVI1_Q3_M02002 TRANSFAC + 46475594 46475602 6.0E-06 TTTCTTGTC 9 V_KLF7_03_M02773 TRANSFAC + 46477394 46477409 4.0E-06 TTGGCCACGCCCCTCC 16 V_ATF3_Q6_M00513 TRANSFAC + 46475521 46475534 5.0E-06 CTCTGATGTCACTG 14 V_BRACH_01_M00150 TRANSFAC + 46475373 46475396 1.0E-06 ATACACACAGCTGGGTGTCATATG 24 V_MZF1_02_M00084 TRANSFAC + 46478841 46478853 1.0E-05 TGGAGATGGGGAA 13 V_KAISO_01_M01119 TRANSFAC + 46479612 46479621 9.0E-06 CTCCTGCTAG 10 V_FAC1_01_M00456 TRANSFAC + 46479375 46479388 0.0E+00 ACACACAACACACA 14 V_FAC1_01_M00456 TRANSFAC + 46479456 46479469 1.0E-06 ACGCACAACACACA 14 V_TAL1_01_M01591 TRANSFAC + 46475427 46475439 9.0E-06 CTTCCTTCTCCTT 13 V_SP4_04_M02914 TRANSFAC - 46477331 46477345 4.0E-06 GAAGGGCGTGGCCCT 15 V_AREB6_02_M00413 TRANSFAC + 46475949 46475960 6.0E-06 ACACACCTGTCC 12 V_ZBTB3_03_M02825 TRANSFAC + 46478776 46478792 7.0E-06 TGGTCCACTGCAGTCTG 17 V_ZSCAN4_04_M02942 TRANSFAC + 46479352 46479367 3.0E-06 CCTTGCACACAAATTG 16 V_ZSCAN4_04_M02942 TRANSFAC + 46479415 46479430 1.0E-06 TAACGCACACAATAAC 16 V_PITX2_Q2_M00482 TRANSFAC + 46472158 46472168 1.0E-06 TGTAATCCCAG 11 V_OCT1_06_M00162 TRANSFAC + 46479387 46479400 3.0E-06 CACATTTAGATACA 14 V_FOXO1_04_M01969 TRANSFAC - 46472098 46472117 3.0E-06 GTCAACATCACCAGGTTAAG 20 V_RFX3_04_M02788 TRANSFAC + 46479671 46479693 7.0E-06 CCATCACCATAGCAACCCAACGT 23 V_MEF2A_05_M01301 TRANSFAC + 46479620 46479631 1.0E-05 AGATATTTTTAA 12 V_HMEF2_Q6_M00406 TRANSFAC - 46479618 46479633 9.0E-06 GTTTAAAAATATCTAG 16 V_MTF1_05_M02778 TRANSFAC - 46475391 46475406 5.0E-06 GGCACGTGTGCATATG 16 V_RFX1_02_M00281 TRANSFAC + 46479645 46479662 1.0E-05 CTGCTGCCATGGCAACCG 18

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.