Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

NINJ1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 4814 ninjurin 1 chr9 - 95896070 - 95901570 95896570 Transcription Factor Binding Sites   Download all TFBS in the NINJ1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Foxa2_MA0047.2 JASPAR - 95895659 95895670 0.0E+00 TGTTTACTTTGA 12 Pax5_MA0014.1 JASPAR + 95895743 95895762 2.0E-06 AGAATTCTGAAGCGGGACCA 20 SOX10_HMG_full_dimeric_16_1 SELEX + 95896319 95896334 6.0E-06 AACACTCTGCAGTGCG 16 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 95894855 95894865 1.0E-05 GCCCCGCCCCC 11 FOXA1_MA0148.1 JASPAR - 95895660 95895670 0.0E+00 TGTTTACTTTG 11 FOXF2_MA0030.1 JASPAR + 95895659 95895672 1.0E-06 TCAAAGTAAACAAG 14 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 95895661 95895672 1.0E-06 AAAGTAAACAAG 12 EBF1_EBF_full_dimeric_14_1 SELEX + 95894880 95894893 6.0E-06 AGCCCCCAGGGAAC 14 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 95895661 95895671 2.0E-06 AAAGTAAACAA 11 FOXO1_forkhead_DBD_monomeric_8_1 SELEX + 95895664 95895671 7.0E-06 GTAAACAA 8 Creb5_bZIP_DBD_dimeric_12_1 SELEX - 95895951 95895962 9.0E-06 AGTTACGTCACC 12 SCRT2_C2H2_DBD_monomeric_13_1 SELEX - 95897223 95897235 4.0E-06 ATACAACAGGTGG 13 GLIS1_C2H2_DBD_monomeric_16_1 SELEX + 95894858 95894873 6.0E-06 CCGCCCCCCACGATGG 16 RORA_nuclearreceptor_DBD_dimeric_19_1 SELEX + 95897065 95897083 2.0E-06 AATGGGGGTTATGAGGGCA 19 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX + 95896448 95896459 6.0E-06 TGCCCGGAGGCA 12 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX - 95896448 95896459 7.0E-06 TGCCTCCGGGCA 12 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 95895657 95895670 5.0E-06 GTTCAAAGTAAACA 14 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX + 95895662 95895675 3.0E-06 AAGTAAACAAGTCA 14 Rarb_nuclearreceptor_DBD_dimeric_17_1 SELEX - 95897040 95897056 9.0E-06 AGGAAAACCTAAGGTCA 17 ATF7_bZIP_DBD_dimeric_14_1 SELEX - 95895950 95895963 9.0E-06 CAGTTACGTCACCC 14 SP1_MA0079.2 JASPAR + 95894856 95894865 7.0E-06 CCCCGCCCCC 10 SOX14_HMG_DBD_dimeric_13_1 SELEX - 95898585 95898597 9.0E-06 TAAACAGCATTGA 13 RARA_nuclearreceptor_full_dimeric_17_1 SELEX - 95897040 95897056 8.0E-06 AGGAAAACCTAAGGTCA 17 SP4_C2H2_full_monomeric_17_1 SELEX + 95894852 95894868 6.0E-06 CATGCCCCGCCCCCCAC 17 SPDEF_ETS_full_putative-multimer_15_1 SELEX - 95895005 95895019 1.0E-06 TTGTTCCCGGATCAC 15 CREB3_bZIP_full_dimeric_14_1 SELEX - 95895950 95895963 5.0E-06 CAGTTACGTCACCC 14 MAFK_bZIP_full_dimeric_15_1 SELEX - 95893578 95893592 7.0E-06 GTGCTGAGTCCGCGG 15 SCRT1_C2H2_DBD_monomeric_15_1 SELEX - 95897151 95897165 7.0E-06 CTGCCACAGGTGGCA 15 SCRT1_C2H2_DBD_monomeric_15_1 SELEX - 95897221 95897235 6.0E-06 ATACAACAGGTGGGG 15 NR2F1_nuclearreceptor_DBD_dimeric_16_1 SELEX + 95897069 95897084 8.0E-06 GGGGTTATGAGGGCAC 16 PITX1_homeodomain_full_monomeric_9_1 SELEX + 95896809 95896817 5.0E-06 TTTAATCCA 9 TFAP2C_TFAP_full_dimeric_12_1 SELEX - 95896448 95896459 7.0E-06 TGCCTCCGGGCA 12 PPARG_MA0066.1 JASPAR + 95893556 95893575 8.0E-06 CTGGGCCAGGCAGACCCACT 20 FOXI1_forkhead_full_dimeric_17_1 SELEX + 95891602 95891618 7.0E-06 CTGTGTCCGGACAACTA 17 FOXI1_forkhead_full_dimeric_17_1 SELEX + 95895655 95895671 1.0E-06 ATGTTCAAAGTAAACAA 17 NR3C1_MA0113.1 JASPAR + 95895646 95895663 8.0E-06 AAGGAAAGAATGTTCAAA 18 GLIS3_C2H2_DBD_monomeric_14_1 SELEX + 95894859 95894872 7.0E-06 CGCCCCCCACGATG 14 FOXB1_forkhead_full_monomeric_9_1 SELEX + 95895663 95895671 7.0E-06 AGTAAACAA 9 TP53_MA0106.1 JASPAR - 95895488 95895507 3.0E-06 CAGGACATGTTCGGGGAGGC 20 FOXO3_forkhead_full_monomeric_8_1 SELEX + 95895664 95895671 7.0E-06 GTAAACAA 8 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX + 95896448 95896459 6.0E-06 TGCCCGGAGGCA 12 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX - 95896448 95896459 6.0E-06 TGCCTCCGGGCA 12 BHLHA15_bHLH_DBD_dimeric_10_1 SELEX + 95897265 95897274 9.0E-06 TCCATATGTT 10 BHLHA15_bHLH_DBD_dimeric_10_1 SELEX - 95897265 95897274 7.0E-06 AACATATGGA 10 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 95895661 95895671 5.0E-06 AAAGTAAACAA 11 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX + 95896448 95896459 5.0E-06 TGCCCGGAGGCA 12 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX - 95896448 95896459 5.0E-06 TGCCTCCGGGCA 12 NFE2L2_MA0150.1 JASPAR - 95900766 95900776 7.0E-06 GTGACTGAGCA 11 RREB1_MA0073.1 JASPAR - 95897160 95897179 5.0E-06 CCCCAGCCCACCCCCTGCCA 20 V_TAXCREB_01_M00114 TRANSFAC + 95895947 95895961 2.0E-06 GTGGGGTGACGTAAC 15 V_AP2ALPHA_Q6_M01857 TRANSFAC - 95895985 95895995 6.0E-06 AGCCTCCGGGC 11 V_AP2ALPHA_Q6_M01857 TRANSFAC + 95896575 95896585 6.0E-06 CGCCCCCGGCC 11 V_AP2ALPHA_Q6_M01857 TRANSFAC + 95896586 95896596 6.0E-06 CGCCCCCGGCC 11 V_HNF3B_01_M00131 TRANSFAC - 95895661 95895675 0.0E+00 TGACTTGTTTACTTT 15 V_GEN_INI_B_M00315 TRANSFAC - 95896820 95896827 1.0E-05 CCTCATTT 8 V_GEN_INI_B_M00315 TRANSFAC + 95898546 95898553 1.0E-05 CCTCATTT 8 V_FLI1_Q6_M01208 TRANSFAC + 95893522 95893532 7.0E-06 CAGGAAGTGCT 11 V_BACH2_01_M00490 TRANSFAC - 95897130 95897140 5.0E-06 CATGAGTCAGC 11 V_XFD1_01_M00267 TRANSFAC + 95895661 95895674 4.0E-06 AAAGTAAACAAGTC 14 V_FOXA2_04_M02749 TRANSFAC + 95895659 95895675 1.0E-06 TCAAAGTAAACAAGTCA 17 V_SREBP2_Q6_M01177 TRANSFAC - 95895947 95895958 5.0E-06 ACGTCACCCCAC 12 V_ZFX_01_M01593 TRANSFAC - 95896644 95896659 1.0E-05 CTCCAGGCCCCGGGCC 16 V_CREB_Q4_M00178 TRANSFAC + 95895951 95895962 6.0E-06 GGTGACGTAACT 12 V_FOXO4_02_M00476 TRANSFAC - 95895661 95895674 4.0E-06 GACTTGTTTACTTT 14 V_SP1_Q6_01_M00931 TRANSFAC - 95894855 95894864 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 95894959 95894968 4.0E-06 GGGGCGGGGC 10 V_DR4_Q2_M00965 TRANSFAC - 95895636 95895652 4.0E-06 TTTCCTTTTCTAACCCC 17 V_NFMUE1_Q6_M00651 TRANSFAC + 95891757 95891765 6.0E-06 CGGCCATCT 9 V_IRF2_Q6_M01882 TRANSFAC + 95895641 95895656 7.0E-06 TAGAAAAGGAAAGAAT 16 V_AP4_Q6_M00176 TRANSFAC - 95891597 95891606 5.0E-06 CACAGCTGGA 10 V_FOXO3A_Q1_M01137 TRANSFAC + 95895663 95895674 9.0E-06 AGTAAACAAGTC 12 V_SP1_03_M02281 TRANSFAC + 95894856 95894865 7.0E-06 CCCCGCCCCC 10 V_P50RELAP65_Q5_01_M01224 TRANSFAC - 95891904 95891915 9.0E-06 GGAGTTTCCCAG 12 V_CREB_01_M00039 TRANSFAC + 95895953 95895960 1.0E-05 TGACGTAA 8 V_SPZ1_01_M00446 TRANSFAC - 95898333 95898347 8.0E-06 GAAGGTGGGAATGGG 15 V_JUNDM2_03_M02772 TRANSFAC + 95895949 95895964 8.0E-06 GGGGTGACGTAACTGT 16 V_NERF_Q2_M00531 TRANSFAC - 95891759 95891776 7.0E-06 GGACAGGAAGCAGATGGC 18 V_E2A_Q2_M00804 TRANSFAC + 95897223 95897236 3.0E-06 CCACCTGTTGTATG 14 V_HEN1_01_M00068 TRANSFAC + 95897137 95897158 7.0E-06 CATGGGCCCATCTGTGCCACCT 22 V_HEN1_01_M00068 TRANSFAC - 95897137 95897158 8.0E-06 AGGTGGCACAGATGGGCCCATG 22 V_PRX2_Q2_M02115 TRANSFAC + 95895659 95895667 7.0E-06 TCAAAGTAA 9 V_AP4_Q6_01_M00927 TRANSFAC - 95895971 95895979 6.0E-06 ACCAGCTGC 9 V_NR3C1_01_M02219 TRANSFAC + 95895646 95895663 8.0E-06 AAGGAAAGAATGTTCAAA 18 V_PAX5_02_M00144 TRANSFAC + 95895739 95895766 4.0E-06 ATGAAGAATTCTGAAGCGGGACCACTAC 28 V_ETS_Q4_M00771 TRANSFAC + 95891762 95891773 9.0E-06 ATCTGCTTCCTG 12 V_ETS_Q4_M00771 TRANSFAC - 95893522 95893533 7.0E-06 CAGCACTTCCTG 12 V_TST1_01_M00133 TRANSFAC - 95896804 95896818 8.0E-06 GTGGATTAAAAGTGT 15 V_GC_01_M00255 TRANSFAC + 95894957 95894970 9.0E-06 GTGGGGCGGGGCTG 14 V_GEN_INI3_B_M00314 TRANSFAC - 95896820 95896827 1.0E-05 CCTCATTT 8 V_GEN_INI3_B_M00314 TRANSFAC + 95898546 95898553 1.0E-05 CCTCATTT 8 V_TCF3_04_M02816 TRANSFAC + 95895653 95895669 5.0E-06 GAATGTTCAAAGTAAAC 17 V_FREAC3_01_M00291 TRANSFAC + 95895659 95895674 7.0E-06 TCAAAGTAAACAAGTC 16 V_FOXO1_02_M00474 TRANSFAC - 95895661 95895674 0.0E+00 GACTTGTTTACTTT 14 V_HNF3G_Q4_M02015 TRANSFAC - 95895701 95895708 7.0E-06 TGTTTGTT 8 V_KROX_Q6_M00982 TRANSFAC + 95896573 95896586 5.0E-06 CCCGCCCCCGGCCC 14 V_KROX_Q6_M00982 TRANSFAC + 95896584 95896597 5.0E-06 CCCGCCCCCGGCCC 14 V_HSF1_01_M00146 TRANSFAC + 95895652 95895661 7.0E-06 AGAATGTTCA 10 V_PXRRXR_02_M01153 TRANSFAC - 95891568 95891575 1.0E-05 AGAGTTCA 6 V_SP1_Q6_M00196 TRANSFAC - 95894854 95894866 6.0E-06 GGGGGGCGGGGCA 13 V_SP1_Q6_M00196 TRANSFAC - 95895482 95895494 8.0E-06 GGGAGGCGGGGCC 13 V_HNF3A_01_M01261 TRANSFAC + 95895662 95895671 1.0E-06 AAGTAAACAA 10 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 95895660 95895670 5.0E-06 TGTTTACTTTG 11 V_E4F1_Q6_01_M02091 TRANSFAC + 95895952 95895961 1.0E-06 GTGACGTAAC 10 V_CREBATF_Q6_M00981 TRANSFAC + 95895952 95895960 3.0E-06 GTGACGTAA 9 V_ERBETA_Q5_M01875 TRANSFAC - 95893556 95893570 9.0E-06 GTCTGCCTGGCCCAG 15 V_TCF7_03_M02817 TRANSFAC + 95895653 95895669 3.0E-06 GAATGTTCAAAGTAAAC 17 V_AP1_C_M00199 TRANSFAC - 95897131 95897139 3.0E-06 ATGAGTCAG 9 V_MAFK_Q3_M02022 TRANSFAC - 95897128 95897138 4.0E-06 TGAGTCAGCGC 11 V_AP1_01_M00517 TRANSFAC - 95897129 95897141 2.0E-06 CCATGAGTCAGCG 13 V_SP3_Q3_M00665 TRANSFAC + 95897085 95897098 5.0E-06 AGACTGCTGGAGGG 14 V_HIC1_02_M01072 TRANSFAC + 95896346 95896360 2.0E-06 CACAGGTGCCCGGGG 15 V_STAT3_03_M01595 TRANSFAC - 95893489 95893504 7.0E-06 CCTGCCAGGAACACAG 16 V_STAT3_03_M01595 TRANSFAC + 95893666 95893681 4.0E-06 TCTGCCAGGAAAGCGG 16 V_AP1_Q2_01_M00924 TRANSFAC + 95897132 95897143 4.0E-06 TGACTCATGGGC 12 V_BCL6B_04_M02844 TRANSFAC - 95894954 95894969 2.0E-06 AGCCCCGCCCCACCAA 16 V_BCL6B_04_M02844 TRANSFAC - 95896276 95896291 1.0E-05 CTTCCCGCCCCATCAG 16 V_NEUROD_02_M01288 TRANSFAC + 95891596 95891607 4.0E-06 CTCCAGCTGTGT 12 V_NEUROD_02_M01288 TRANSFAC - 95893516 95893527 1.0E-06 TTCCTGCTGTCT 12 V_SP4_Q5_M01273 TRANSFAC + 95894855 95894865 1.0E-06 GCCCCGCCCCC 11 V_FREAC2_01_M00290 TRANSFAC + 95895659 95895674 1.0E-06 TCAAAGTAAACAAGTC 16 V_AML2_Q3_01_M01854 TRANSFAC - 95896496 95896506 9.0E-06 CCGCACCATGG 11 V_CREBP1_Q2_M00179 TRANSFAC + 95895951 95895962 0.0E+00 GGTGACGTAACT 12 V_MYOD_Q6_01_M00929 TRANSFAC - 95897148 95897165 7.0E-06 CTGCCACAGGTGGCACAG 18 V_FOXL1_04_M02753 TRANSFAC + 95895659 95895675 5.0E-06 TCAAAGTAAACAAGTCA 17 V_T3R_Q6_M00963 TRANSFAC - 95896377 95896385 7.0E-06 CCTGTCCTT 9 V_CBF_01_M01079 TRANSFAC + 95897237 95897252 4.0E-06 ATTGAAGTGGTTGTTT 16 V_PLAG1_01_M01778 TRANSFAC - 95891857 95891872 7.0E-06 GAGGCCAACGGAGGGG 16 V_ATF1_03_M02738 TRANSFAC + 95895949 95895964 1.0E-05 GGGGTGACGTAACTGT 16 V_PARP_Q3_M01211 TRANSFAC - 95895860 95895869 2.0E-06 TGAGAAATAG 10 V_GEN_INI2_B_M00313 TRANSFAC - 95896820 95896827 1.0E-05 CCTCATTT 8 V_GEN_INI2_B_M00313 TRANSFAC + 95898546 95898553 1.0E-05 CCTCATTT 8 V_CREB_Q2_M00177 TRANSFAC + 95895951 95895962 2.0E-06 GGTGACGTAACT 12 V_FOXO3_01_M00477 TRANSFAC - 95895661 95895674 1.0E-06 GACTTGTTTACTTT 14 V_FOXA2_03_M02260 TRANSFAC - 95895659 95895670 0.0E+00 TGTTTACTTTGA 12 V_ETS1_B_M00339 TRANSFAC + 95893521 95893535 1.0E-06 GCAGGAAGTGCTGGA 15 V_MYF6_03_M02781 TRANSFAC - 95898596 95898611 9.0E-06 AGAGAACAGTTGGGTA 16 V_ZFP281_04_M02831 TRANSFAC + 95894659 95894673 2.0E-06 TTCCCATCCCCCCAC 15 V_SREBP1_02_M00221 TRANSFAC - 95895947 95895957 2.0E-06 CGTCACCCCAC 11 V_HFH3_01_M00289 TRANSFAC - 95895661 95895673 9.0E-06 ACTTGTTTACTTT 13 V_FOXJ2_01_M00422 TRANSFAC + 95895658 95895675 2.0E-06 TTCAAAGTAAACAAGTCA 18 V_NFE2_Q6_M02104 TRANSFAC - 95897125 95897140 5.0E-06 CATGAGTCAGCGCACG 16 V_E4F1_Q6_M00694 TRANSFAC - 95895952 95895961 1.0E-06 GTTACGTCAC 10 V_FOXO1_01_M00473 TRANSFAC + 95895663 95895672 7.0E-06 AGTAAACAAG 10 V_NFE2_01_M00037 TRANSFAC + 95897129 95897139 4.0E-06 CGCTGACTCAT 11 V_HNF3B_Q6_M02014 TRANSFAC - 95895663 95895671 2.0E-06 TTGTTTACT 9 V_CREB_02_M00113 TRANSFAC + 95895949 95895960 4.0E-06 GGGGTGACGTAA 12 V_FREAC4_01_M00292 TRANSFAC - 95898588 95898603 2.0E-06 GTTGGGTAAACAGCAT 16 V_SP1_Q2_01_M00933 TRANSFAC + 95894856 95894865 4.0E-06 CCCCGCCCCC 10 V_NFE2L2_01_M02263 TRANSFAC - 95900766 95900776 7.0E-06 GTGACTGAGCA 11 V_FOXO4_01_M00472 TRANSFAC + 95895664 95895674 5.0E-06 GTAAACAAGTC 11 V_SP1_Q4_01_M00932 TRANSFAC - 95894854 95894866 5.0E-06 GGGGGGCGGGGCA 13 V_FOXK1_03_M02752 TRANSFAC + 95895659 95895675 6.0E-06 TCAAAGTAAACAAGTCA 17 V_PAX6_01_M00097 TRANSFAC - 95895000 95895020 1.0E-05 TTTGTTCCCGGATCACTGTCT 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.