Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

NFYC Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 4802 nuclear transcription factor Y, gamma chr1 + 41152241 - 41158179 41157679 V_NFYC_Q5_M02107 Transcription Factor Binding Sites   Download all TFBS in the NFYC promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints MESP1_bHLH_DBD_dimeric_10_1 SELEX - 41161968 41161977 2.0E-06 AACACCTGTA 10 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 41162011 41162027 2.0E-06 CATTTACATAAGAATTA 17 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 41157022 41157038 8.0E-06 AAAAACACAAATACACA 17 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 41157181 41157194 5.0E-06 GACCCCGCCCCCTT 14 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 41157219 41157232 7.0E-06 AACCCCGCCCCCTT 14 POU5F1P1_POU_DBD_monomeric_9_1 SELEX + 41162018 41162026 3.0E-06 TATGTAAAT 9 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX + 41157189 41157202 5.0E-06 GGGGTCAAAACTCA 14 POU2F3_POU_DBD_monomeric_9_1 SELEX + 41162018 41162026 4.0E-06 TATGTAAAT 9 POU1F1_POU_DBD_monomeric_14_1 SELEX + 41162016 41162029 1.0E-06 CTTATGTAAATGAA 14 SOX15_HMG_full_dimeric_15_3 SELEX - 41158410 41158424 6.0E-06 CTCAATAGCATTCCT 15 POU2F2_POU_DBD_monomeric_11_1 SELEX + 41162017 41162027 2.0E-06 TTATGTAAATG 11 IRF5_IRF_full_monomeric_11_1 SELEX + 41158146 41158156 6.0E-06 CACCGAAACCC 11 POU3F4_POU_DBD_monomeric_9_1 SELEX + 41162018 41162026 4.0E-06 TATGTAAAT 9 Sox1_HMG_DBD_dimeric_13_1 SELEX - 41158411 41158423 3.0E-06 TCAATAGCATTCC 13 Pou2f2_POU_DBD_monomeric_9_1 SELEX + 41162018 41162026 5.0E-06 TATGTAAAT 9 Pax4_MA0068.1 JASPAR + 41157017 41157046 0.0E+00 AAATTAAAAACACAAATACACACACACGCC 30 Pax4_MA0068.1 JASPAR + 41157018 41157047 1.0E-05 AATTAAAAACACAAATACACACACACGCCC 30 ZIC4_C2H2_DBD_monomeric_15_1 SELEX + 41157935 41157949 1.0E-06 GACCCCCTGCGGCGC 15 POU3F3_POU_DBD_monomeric_13_1 SELEX + 41162016 41162028 5.0E-06 CTTATGTAAATGA 13 TCF4_bHLH_full_dimeric_10_1 SELEX - 41161968 41161977 1.0E-06 AACACCTGTA 10 E2F8_E2F_DBD_dimeric_12_1 SELEX + 41157008 41157019 1.0E-06 TTTCTCCCCAAA 12 FIGLA_bHLH_DBD_dimeric_10_1 SELEX - 41161968 41161977 2.0E-06 AACACCTGTA 10 SOX2_HMG_full_dimeric_15_1 SELEX - 41158410 41158424 9.0E-06 CTCAATAGCATTCCT 15 SP1_MA0079.2 JASPAR - 41157183 41157192 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 41157221 41157230 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 41157592 41157601 3.0E-06 CCCCTCCCCC 10 FOXI1_MA0042.1 JASPAR - 41160231 41160242 6.0E-06 TCATATTTGGTT 12 ZIC3_C2H2_full_monomeric_15_1 SELEX + 41157935 41157949 0.0E+00 GACCCCCTGCGGCGC 15 SP4_C2H2_full_monomeric_17_1 SELEX - 41157180 41157196 0.0E+00 TTGACCCCGCCCCCTTT 17 SP4_C2H2_full_monomeric_17_1 SELEX - 41157218 41157234 0.0E+00 TTAACCCCGCCCCCTTT 17 SP1_C2H2_DBD_monomeric_11_1 SELEX - 41157183 41157193 4.0E-06 ACCCCGCCCCC 11 SP1_C2H2_DBD_monomeric_11_1 SELEX - 41157221 41157231 4.0E-06 ACCCCGCCCCC 11 YY2_C2H2_full_monomeric_11_1 SELEX + 41157388 41157398 4.0E-06 GCCGCCATCTT 11 YY2_C2H2_full_monomeric_11_1 SELEX + 41157674 41157684 8.0E-06 GCCGCCATGTT 11 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 41160210 41160230 7.0E-06 AACTTGATGACTGAGCCAAAT 21 MZF1_5-13_MA0057.1 JASPAR + 41157348 41157357 4.0E-06 GGAGGGGGAA 10 MZF1_5-13_MA0057.1 JASPAR - 41157445 41157454 4.0E-06 GGAGGGGGAA 10 POU3F1_POU_DBD_monomeric_12_1 SELEX + 41162017 41162028 0.0E+00 TTATGTAAATGA 12 MAFG_bZIP_full_dimeric_21_1 SELEX - 41160210 41160230 6.0E-06 AACTTGATGACTGAGCCAAAT 21 Pou5f1_MA0142.1 JASPAR + 41162012 41162026 0.0E+00 AATTCTTATGTAAAT 15 POU2F1_POU_DBD_monomeric_12_1 SELEX + 41162016 41162027 3.0E-06 CTTATGTAAATG 12 SRY_HMG_DBD_dimeric_13_1 SELEX - 41158411 41158423 3.0E-06 TCAATAGCATTCC 13 POU3F3_POU_DBD_dimeric_12_1 SELEX - 41162013 41162024 9.0E-06 TTACATAAGAAT 12 POU3F2_POU_DBD_monomeric_12_1 SELEX + 41162017 41162028 0.0E+00 TTATGTAAATGA 12 Sox2_MA0143.1 JASPAR + 41162011 41162025 8.0E-06 TAATTCTTATGTAAA 15 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 41157022 41157034 3.0E-06 AAAAACACAAATA 13 TBX1_TBX_DBD_dimeric_20_1 SELEX + 41161959 41161978 0.0E+00 TGGTGGGATTACAGGTGTTA 20 GLIS2_C2H2_DBD_monomeric_14_1 SELEX + 41157935 41157948 4.0E-06 GACCCCCTGCGGCG 14 RORA_2_MA0072.1 JASPAR - 41158198 41158211 6.0E-06 CCAAACTGGGTCAC 14 TCF3_bHLH_DBD_dimeric_10_1 SELEX - 41161968 41161977 1.0E-06 AACACCTGTA 10 ZIC1_C2H2_full_monomeric_14_1 SELEX + 41157935 41157948 1.0E-06 GACCCCCTGCGGCG 14 Zfx_MA0146.1 JASPAR + 41157462 41157475 8.0E-06 CGCGCCTGGGCCTC 14 V_FOXP1_01_M00987 TRANSFAC - 41157016 41157035 0.0E+00 GTATTTGTGTTTTTAATTTG 20 V_FOXP1_01_M00987 TRANSFAC - 41157022 41157041 0.0E+00 GTGTGTGTATTTGTGTTTTT 20 V_FOXP1_01_M00987 TRANSFAC - 41157024 41157043 4.0E-06 GTGTGTGTGTATTTGTGTTT 20 V_DBX1_01_M01483 TRANSFAC - 41162004 41162020 6.0E-06 ATAAGAATTAAGAATTA 17 V_GEN_INI_B_M00315 TRANSFAC + 41160206 41160213 1.0E-05 CCTCATTT 8 V_CDX2_Q5_01_M01659 TRANSFAC - 41156921 41156931 4.0E-06 TTCATAAAAGA 11 V_ZFP410_04_M02936 TRANSFAC + 41157005 41157021 7.0E-06 TTCTTTCTCCCCAAATT 17 V_YY1_02_M00069 TRANSFAC + 41157386 41157405 2.0E-06 TGGCCGCCATCTTGCTTGTG 20 V_ZFX_01_M01593 TRANSFAC + 41157820 41157835 7.0E-06 GGGGAGGCCGCGGACC 16 V_POU5F1_02_M02245 TRANSFAC + 41162012 41162026 0.0E+00 AATTCTTATGTAAAT 15 V_RORA_Q4_M01138 TRANSFAC - 41158199 41158209 3.0E-06 AAACTGGGTCA 11 V_SP1_Q6_01_M00931 TRANSFAC + 41157184 41157193 7.0E-06 GGGGCGGGGT 10 V_SP1_Q6_01_M00931 TRANSFAC + 41157222 41157231 7.0E-06 GGGGCGGGGT 10 V_OCT1_Q5_01_M00930 TRANSFAC - 41162018 41162028 2.0E-06 TCATTTACATA 11 V_OCT1_01_M00135 TRANSFAC + 41162013 41162031 9.0E-06 ATTCTTATGTAAATGAAGC 19 V_CEBP_01_M00159 TRANSFAC - 41160227 41160239 2.0E-06 TATTTGGTTAACT 13 V_POU2F3_01_M01476 TRANSFAC + 41156810 41156825 8.0E-06 CTGCATTCAAATAAGA 16 V_POU2F3_01_M01476 TRANSFAC + 41162015 41162030 1.0E-06 TCTTATGTAAATGAAG 16 V_POU3F2_02_M00464 TRANSFAC + 41162017 41162026 9.0E-06 TTATGTAAAT 10 V_YY1_Q6_M00793 TRANSFAC + 41157391 41157399 7.0E-06 GCCATCTTG 9 V_MAF_Q6_M00648 TRANSFAC - 41157438 41157453 8.0E-06 GAGGGGGAAGTGTGCG 16 V_GABPA_04_M02858 TRANSFAC - 41157988 41158003 1.0E-06 CTCTCTTCCCCCTTAA 16 V_SP1_03_M02281 TRANSFAC - 41157183 41157192 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 41157221 41157230 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 41157592 41157601 3.0E-06 CCCCTCCCCC 10 V_PITX2_Q6_M02114 TRANSFAC - 41161962 41161971 1.0E-06 TGTAATCCCA 10 V_SP1_02_M01303 TRANSFAC + 41157184 41157194 8.0E-06 GGGGCGGGGTC 11 V_AIRE_02_M01000 TRANSFAC - 41160221 41160245 6.0E-06 TCTTCATATTTGGTTAACTTGATGA 25 V_NFY_Q6_01_M00775 TRANSFAC - 41157805 41157817 9.0E-06 CACCGACCAATCA 13 V_STAT4_Q4_M01666 TRANSFAC + 41156815 41156828 0.0E+00 TTCAAATAAGAACA 14 V_NFY_C_M00209 TRANSFAC + 41157803 41157816 3.0E-06 CGTGATTGGTCGGT 14 V_HMBOX1_01_M01456 TRANSFAC - 41160225 41160241 5.0E-06 CATATTTGGTTAACTTG 17 V_SOX13_03_M02797 TRANSFAC + 41156820 41156835 8.0E-06 ATAAGAACAACTATGT 16 V_GC_01_M00255 TRANSFAC + 41157182 41157195 7.0E-06 AGGGGGCGGGGTCA 14 V_GC_01_M00255 TRANSFAC + 41157220 41157233 2.0E-06 AGGGGGCGGGGTTA 14 V_GEN_INI3_B_M00314 TRANSFAC + 41160206 41160213 1.0E-05 CCTCATTT 8 V_DBP_Q6_01_M01872 TRANSFAC + 41162017 41162024 5.0E-06 TTATGTAA 8 V_SPI1_03_M02078 TRANSFAC - 41157630 41157639 1.0E-05 CGAGGAAGTG 10 V_SOX8_04_M02912 TRANSFAC - 41156921 41156934 1.0E-06 AAATTCATAAAAGA 14 V_SOX1_04_M02906 TRANSFAC - 41156821 41156835 4.0E-06 ACATAGTTGTTCTTA 15 V_SP4_03_M02810 TRANSFAC - 41157178 41157194 1.0E-06 GACCCCGCCCCCTTTCG 17 V_SP4_03_M02810 TRANSFAC - 41157216 41157232 3.0E-06 AACCCCGCCCCCTTTCG 17 V_SP1_Q6_M00196 TRANSFAC + 41157182 41157194 0.0E+00 AGGGGGCGGGGTC 13 V_SP1_Q6_M00196 TRANSFAC + 41157220 41157232 0.0E+00 AGGGGGCGGGGTT 13 V_E47_02_M00071 TRANSFAC + 41161965 41161980 1.0E-06 GATTACAGGTGTTAGC 16 V_MAZ_Q6_01_M02023 TRANSFAC - 41157449 41157462 0.0E+00 GGCGGAGGGGAGGG 14 V_EGR1_Q6_M01873 TRANSFAC + 41157500 41157509 4.0E-06 GCGGGGGCGG 10 V_HNF1_Q6_01_M01011 TRANSFAC - 41162005 41162025 5.0E-06 TTTACATAAGAATTAAGAATT 21 V_YY1_Q6_02_M01035 TRANSFAC + 41157388 41157398 7.0E-06 GCCGCCATCTT 11 V_OCT1_04_M00138 TRANSFAC - 41156801 41156823 1.0E-06 TTATTTGAATGCAGATTTTAAAG 23 V_OCT1_04_M00138 TRANSFAC + 41156806 41156828 4.0E-06 AAATCTGCATTCAAATAAGAACA 23 V_OCT1_04_M00138 TRANSFAC + 41162011 41162033 8.0E-06 TAATTCTTATGTAAATGAAGCCC 23 V_REX1_03_M01744 TRANSFAC - 41157387 41157398 0.0E+00 AAGATGGCGGCC 12 V_REX1_03_M01744 TRANSFAC - 41157673 41157684 2.0E-06 AACATGGCGGCG 12 V_KLF7_03_M02773 TRANSFAC - 41157181 41157196 0.0E+00 TTGACCCCGCCCCCTT 16 V_KLF7_03_M02773 TRANSFAC - 41157219 41157234 0.0E+00 TTAACCCCGCCCCCTT 16 V_NCX_02_M01420 TRANSFAC - 41162004 41162020 8.0E-06 ATAAGAATTAAGAATTA 17 V_PPARA_02_M00518 TRANSFAC + 41157138 41157156 5.0E-06 CAGGGTGGTGGAGGTCACT 19 V_SP3_Q3_M00665 TRANSFAC - 41157272 41157285 0.0E+00 AGAATTGGGAAGGG 14 V_SP1_01_M00008 TRANSFAC + 41157184 41157193 3.0E-06 GGGGCGGGGT 10 V_SP1_01_M00008 TRANSFAC + 41157222 41157231 3.0E-06 GGGGCGGGGT 10 V_OCT4_02_M01124 TRANSFAC - 41157018 41157032 2.0E-06 TTTGTGTTTTTAATT 15 V_OCT4_02_M01124 TRANSFAC + 41162013 41162027 1.0E-06 ATTCTTATGTAAATG 15 V_MZF1_02_M00084 TRANSFAC - 41157445 41157457 6.0E-06 AGGGGAGGGGGAA 13 V_ISGF4G_04_M02875 TRANSFAC + 41157021 41157034 3.0E-06 TAAAAACACAAATA 14 V_OCT_Q6_M00795 TRANSFAC - 41162018 41162028 1.0E-06 TCATTTACATA 11 V_TFIII_Q6_M00706 TRANSFAC - 41157255 41157263 6.0E-06 AGAGGGAGG 9 V_SP4_Q5_M01273 TRANSFAC - 41157592 41157602 5.0E-06 GCCCCTCCCCC 11 V_GCNF_01_M00526 TRANSFAC + 41157059 41157076 8.0E-06 CTAAAACTCAAGGGCACG 18 V_GCNF_01_M00526 TRANSFAC + 41157097 41157114 8.0E-06 CTAAAATTCAAGCTCGCA 18 V_YY1_03_M02044 TRANSFAC + 41157388 41157399 1.0E-06 GCCGCCATCTTG 12 V_YY1_03_M02044 TRANSFAC + 41157674 41157685 1.0E-06 GCCGCCATGTTG 12 V_MTF1_06_M02882 TRANSFAC + 41157017 41157030 9.0E-06 AAATTAAAAACACA 14 V_MTF1_06_M02882 TRANSFAC + 41160235 41160248 6.0E-06 AAATATGAAGAATG 14 V_MTF1_06_M02882 TRANSFAC - 41162009 41162022 5.0E-06 ACATAAGAATTAAG 14 V_IRF5_03_M02769 TRANSFAC + 41158143 41158157 7.0E-06 AAACACCGAAACCCA 15 V_FAC1_01_M00456 TRANSFAC + 41157019 41157032 4.0E-06 ATTAAAAACACAAA 14 V_OCT2_01_M01368 TRANSFAC + 41156810 41156825 6.0E-06 CTGCATTCAAATAAGA 16 V_OCT2_01_M01368 TRANSFAC + 41162015 41162030 1.0E-06 TCTTATGTAAATGAAG 16 V_AREB6_02_M00413 TRANSFAC - 41161967 41161978 5.0E-06 TAACACCTGTAA 12 V_LUN1_01_M00480 TRANSFAC + 41158014 41158030 8.0E-06 TGGCAGGTACTTTGGGG 17 V_NANOG_01_M01123 TRANSFAC - 41157929 41157940 4.0E-06 GGGGTCATTGCC 12 V_PARP_Q3_M01211 TRANSFAC - 41154330 41154339 3.0E-06 TAAGAAATAC 10 V_GEN_INI2_B_M00313 TRANSFAC + 41160206 41160213 1.0E-05 CCTCATTT 8 V_TCF1_06_M02815 TRANSFAC - 41160222 41160238 2.0E-06 ATTTGGTTAACTTGATG 17 V_TCF1_06_M02815 TRANSFAC + 41160223 41160239 0.0E+00 ATCAAGTTAACCAAATA 17 V_HNF1B_01_M01425 TRANSFAC - 41160221 41160237 5.0E-06 TTTGGTTAACTTGATGA 17 V_ASCL2_04_M02841 TRANSFAC - 41157219 41157234 4.0E-06 TTAACCCCGCCCCCTT 16 V_SPIC_02_M02077 TRANSFAC - 41157630 41157639 9.0E-06 CGAGGAAGTG 10 V_IRF6_04_M02874 TRANSFAC - 41158399 41158413 6.0E-06 TCCTCTCTCGGTTTA 15 V_PITX2_Q2_M00482 TRANSFAC - 41161961 41161971 2.0E-06 TGTAATCCCAC 11 V_ZFP281_01_M01597 TRANSFAC + 41157591 41157601 2.0E-06 GGGGGGAGGGG 11 V_IRF6_03_M02770 TRANSFAC + 41158144 41158160 4.0E-06 AACACCGAAACCCAAGT 17 V_EGR1_06_M02744 TRANSFAC - 41157497 41157510 4.0E-06 GCCGCCCCCGCGCT 14 V_SOX2_01_M02246 TRANSFAC + 41162011 41162025 8.0E-06 TAATTCTTATGTAAA 15 V_ZFP281_04_M02831 TRANSFAC - 41157348 41157362 4.0E-06 TTCCCTTCCCCCTCC 15 V_SRF_06_M02916 TRANSFAC + 41157019 41157035 8.0E-06 ATTAAAAACACAAATAC 17 V_VMAF_01_M00035 TRANSFAC - 41160211 41160229 2.0E-06 ACTTGATGACTGAGCCAAA 19 V_SOX18_04_M02905 TRANSFAC - 41156924 41156939 6.0E-06 ACCTTAAATTCATAAA 16 V_SOX1_03_M02802 TRANSFAC - 41156922 41156937 5.0E-06 CTTAAATTCATAAAAG 16 V_PIT1_Q6_M00802 TRANSFAC + 41162005 41162022 3.0E-06 AATTCTTAATTCTTATGT 18 V_SP1_Q2_01_M00933 TRANSFAC - 41157183 41157192 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC - 41157221 41157230 4.0E-06 CCCCGCCCCC 10 V_UF1H3BETA_Q6_M01068 TRANSFAC + 41157348 41157361 6.0E-06 GGAGGGGGAAGGGA 14 V_NFYA_Q5_M02106 TRANSFAC - 41157801 41157814 8.0E-06 CGACCAATCACGAG 14 V_SP1_Q4_01_M00932 TRANSFAC + 41157182 41157194 0.0E+00 AGGGGGCGGGGTC 13 V_SP1_Q4_01_M00932 TRANSFAC + 41157220 41157232 1.0E-06 AGGGGGCGGGGTT 13 V_STAT1_05_M01260 TRANSFAC - 41157084 41157105 1.0E-06 GAATTTTAGGAAATAAGTAGGT 22 V_PAX4_04_M00380 TRANSFAC + 41157015 41157044 3.0E-06 CCAAATTAAAAACACAAATACACACACACG 30 V_PAX4_04_M00380 TRANSFAC + 41157017 41157046 7.0E-06 AAATTAAAAACACAAATACACACACACGCC 30 V_RORA2_01_M00157 TRANSFAC - 41158198 41158210 5.0E-06 CAAACTGGGTCAC 13 V_NANOG_02_M01247 TRANSFAC + 41157020 41157039 8.0E-06 TTAAAAACACAAATACACAC 20 V_NANOG_02_M01247 TRANSFAC - 41162006 41162025 6.0E-06 TTTACATAAGAATTAAGAAT 20 V_OCT4_01_M01125 TRANSFAC - 41156808 41156822 6.0E-06 TATTTGAATGCAGAT 15 V_OCT4_01_M01125 TRANSFAC + 41162012 41162026 0.0E+00 AATTCTTATGTAAAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.