Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

NFIX Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 4784 nuclear factor I/X (CCAAT-binding transcription factor) chr19 + 13101583 - 13107083 13106583 NFIX_NFI_full_monomeric_9_2 NFIX_NFI_full_dimeric_15_2 Transcription Factor Binding Sites   Download all TFBS in the NFIX promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CENPB_CENPB_full_monomeric_15_1 SELEX + 13107624 13107638 2.0E-06 CCCGCCTGCAGCGAA 15 HES5_bHLH_DBD_dimeric_12_1 SELEX + 13106089 13106100 8.0E-06 CAGCACGTGTCA 12 IRF7_IRF_DBD_dimeric_14_1 SELEX - 13106295 13106308 2.0E-06 GTGAAAGTGAAAGT 14 IRF8_IRF_full_dimeric_14_1 SELEX - 13106295 13106308 1.0E-06 GTGAAAGTGAAAGT 14 HINFP1_C2H2_full_dimeric_20_1 SELEX - 13107388 13107407 9.0E-06 GCAGAGGCTGCGACGTCCGG 20 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX - 13107714 13107724 8.0E-06 AGCCTCAGGCC 11 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 13109189 13109204 9.0E-06 TTAAAGTCAATAAATG 16 IRF1_MA0050.1 JASPAR - 13106295 13106306 1.0E-06 GAAAGTGAAAGT 12 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 13109189 13109204 7.0E-06 TTAAAGTCAATAAATG 16 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 13109197 13109211 7.0E-06 AATAAATGATTGAGC 15 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX + 13109192 13109205 1.0E-06 AAGTCAATAAATGA 14 SP1_MA0079.2 JASPAR + 13106225 13106234 9.0E-06 CCCCTCCTCC 10 FOXB1_forkhead_DBD_putative-multimer_14_1 SELEX - 13105756 13105769 9.0E-06 GCATGACACATAGA 14 BARHL2_homeodomain_full_monomeric_10_1 SELEX + 13109197 13109206 9.0E-06 AATAAATGAT 10 YY2_C2H2_full_monomeric_11_1 SELEX - 13107300 13107310 1.0E-06 CCCGCCATTTT 11 MZF1_5-13_MA0057.1 JASPAR - 13110350 13110359 4.0E-06 GGAGGGGGAA 10 NRL_bZIP_DBD_monomeric_11_1 SELEX + 13110392 13110402 8.0E-06 CATTTGCTGAC 11 ZSCAN4_C2H2_full_monomeric_15_1 SELEX - 13106057 13106071 2.0E-06 GACACACGCTGACAC 15 TEAD3_TEA_DBD_monomeric_8_1 SELEX - 13110874 13110881 1.0E-05 ACATTCCA 8 IRF9_IRF_full_trimeric_15_1 SELEX - 13106295 13106309 7.0E-06 TGTGAAAGTGAAAGT 15 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 13106293 13106307 0.0E+00 TGAAAGTGAAAGTTT 15 Tp53_p53l_DBD_dimeric_17_1 SELEX - 13110979 13110995 5.0E-06 GCAAGATTAGAACATGT 17 IRF4_IRF_full_dimeric_15_1 SELEX - 13106294 13106308 9.0E-06 GTGAAAGTGAAAGTT 15 MAFK_bZIP_full_monomeric_12_1 SELEX + 13110391 13110402 9.0E-06 ACATTTGCTGAC 12 ZNF524_C2H2_full_monomeric_14_1 SELEX - 13110955 13110968 6.0E-06 CTCGAACCCATTTC 14 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 13109197 13109211 1.0E-05 AATAAATGATTGAGC 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 13109192 13109204 4.0E-06 AAGTCAATAAATG 13 IRF2_MA0051.1 JASPAR - 13106290 13106307 0.0E+00 TGAAAGTGAAAGTTTAGA 18 V_MINI20_B_M00324 TRANSFAC + 13106663 13106683 1.0E-05 GTACTGCCTCACCCAGGTACC 21 V_FOXP1_01_M00987 TRANSFAC + 13106163 13106182 5.0E-06 ATGTGTGTGCTTGTGTGTGT 20 V_FOXP1_01_M00987 TRANSFAC - 13110401 13110420 4.0E-06 ATGTATGTCTTTGTGTGTGT 20 V_DBX1_01_M01483 TRANSFAC + 13109192 13109208 4.0E-06 AAGTCAATAAATGATTG 17 V_BCL6_Q3_01_M02085 TRANSFAC - 13109291 13109300 2.0E-06 TTTTCTAGAA 10 V_CDX2_Q5_01_M01659 TRANSFAC + 13109195 13109205 3.0E-06 TCAATAAATGA 11 V_MAX_Q6_M01830 TRANSFAC - 13106091 13106102 2.0E-06 CCTGACACGTGC 12 V_FOXA2_04_M02749 TRANSFAC + 13109189 13109205 2.0E-06 TTAAAGTCAATAAATGA 17 V_NRSF_Q4_M01028 TRANSFAC + 13106921 13106939 9.0E-06 GCGCTGCCCGTGGAGCGCA 19 V_MAFB_05_M02775 TRANSFAC + 13110391 13110407 3.0E-06 ACATTTGCTGACACACA 17 V_IRF_Q6_01_M00972 TRANSFAC - 13106296 13106306 0.0E+00 GAAAGTGAAAG 11 V_IRF2_Q6_M01882 TRANSFAC - 13106293 13106308 0.0E+00 GTGAAAGTGAAAGTTT 16 V_SP1_03_M02281 TRANSFAC + 13106225 13106234 9.0E-06 CCCCTCCTCC 10 V_CACCCBINDINGFACTOR_Q6_M00721 TRANSFAC - 13106669 13106684 3.0E-06 CGGTACCTGGGTGAGG 16 V_GM497_04_M02864 TRANSFAC - 13106151 13106166 9.0E-06 ACATGCACACACACAC 16 V_GM497_04_M02864 TRANSFAC - 13106161 13106176 8.0E-06 ACAAGCACACACATGC 16 V_GM497_04_M02864 TRANSFAC - 13106953 13106968 8.0E-06 ACACACACACACGTAC 16 V_GM497_04_M02864 TRANSFAC + 13109609 13109624 1.0E-05 ATTAACACACACGCAC 16 V_GM497_04_M02864 TRANSFAC + 13110421 13110436 4.0E-06 GGCCGCACACACGGAT 16 V_CDX_Q5_M00991 TRANSFAC + 13110402 13110419 2.0E-06 CACACACAAAGACATACA 18 V_LDSPOLYA_B_M00317 TRANSFAC - 13109608 13109623 2.0E-06 TGCGTGTGTGTTAATG 16 V_MYCMAX_02_M00123 TRANSFAC + 13106089 13106100 1.0E-06 CAGCACGTGTCA 12 V_XFD3_01_M00269 TRANSFAC + 13109191 13109204 5.0E-06 AAAGTCAATAAATG 14 V_SP4_03_M02810 TRANSFAC - 13107341 13107357 8.0E-06 GCGCCCGCCCCCCTCTC 17 V_IRX4_01_M01410 TRANSFAC - 13110973 13110989 6.0E-06 TTAGAACATGTAGAGCT 17 V_IRX4_01_M01410 TRANSFAC + 13110974 13110990 7.0E-06 GCTCTACATGTTCTAAT 17 V_EGR1_Q6_M01873 TRANSFAC - 13106689 13106698 4.0E-06 GCGGGGGCGG 10 V_IRF_Q6_M00772 TRANSFAC + 13106292 13106306 0.0E+00 TAAACTTTCACTTTC 15 V_LXR_DR4_Q3_M00766 TRANSFAC - 13107572 13107587 3.0E-06 TGCCCGAGGCTGACCC 16 V_ISRE_01_M00258 TRANSFAC + 13106294 13106308 8.0E-06 AACTTTCACTTTCAC 15 V_YY1_Q6_02_M01035 TRANSFAC - 13107300 13107310 1.0E-06 CCCGCCATTTT 11 V_SOX12_04_M02900 TRANSFAC + 13110401 13110416 1.0E-06 ACACACACAAAGACAT 16 V_NCX_02_M01420 TRANSFAC - 13109192 13109208 3.0E-06 CAATCATTTATTGACTT 17 V_STAT3_03_M01595 TRANSFAC + 13110837 13110852 6.0E-06 TCTGCCGGGAACAGGG 16 V_IRX3_01_M01318 TRANSFAC - 13110973 13110989 6.0E-06 TTAGAACATGTAGAGCT 17 V_IRX3_01_M01318 TRANSFAC + 13110974 13110990 6.0E-06 GCTCTACATGTTCTAAT 17 V_MZF1_02_M00084 TRANSFAC + 13109258 13109270 1.0E-06 GGGCGAGGGGGAA 13 V_IRX5_01_M01472 TRANSFAC + 13108241 13108257 6.0E-06 TGCATACATGTTGCAGT 17 V_IRX5_01_M01472 TRANSFAC - 13110973 13110989 4.0E-06 TTAGAACATGTAGAGCT 17 V_IRX5_01_M01472 TRANSFAC + 13110974 13110990 7.0E-06 GCTCTACATGTTCTAAT 17 V_SP4_Q5_M01273 TRANSFAC + 13106212 13106222 7.0E-06 GCCCCTCCCCG 11 V_IRX3_02_M01485 TRANSFAC - 13110973 13110989 5.0E-06 TTAGAACATGTAGAGCT 17 V_IRX3_02_M01485 TRANSFAC + 13110974 13110990 3.0E-06 GCTCTACATGTTCTAAT 17 V_MINI19_B_M00323 TRANSFAC + 13106663 13106683 6.0E-06 GTACTGCCTCACCCAGGTACC 21 V_FAC1_01_M00456 TRANSFAC - 13105840 13105853 8.0E-06 GCACACAACAAGGA 14 V_SMAD4_04_M02898 TRANSFAC - 13107299 13107315 6.0E-06 GGAGCCCCGCCATTTTC 17 V_FOXL1_04_M02753 TRANSFAC + 13109189 13109205 3.0E-06 TTAAAGTCAATAAATGA 17 V_ZSCAN4_04_M02942 TRANSFAC - 13105842 13105857 0.0E+00 CCAGGCACACAACAAG 16 V_IRX2_01_M01405 TRANSFAC + 13108241 13108257 5.0E-06 TGCATACATGTTGCAGT 17 V_IRX2_01_M01405 TRANSFAC - 13110973 13110989 4.0E-06 TTAGAACATGTAGAGCT 17 V_IRF1_Q6_01_M01881 TRANSFAC + 13106294 13106307 0.0E+00 AACTTTCACTTTCA 14 V_AP2ALPHA_02_M01045 TRANSFAC - 13107712 13107726 1.0E-05 AGAGCCTCAGGCCAC 15 V_UF1H3BETA_Q6_M01068 TRANSFAC - 13106192 13106205 2.0E-06 GGCGGGGGAGCGGC 14 V_ZFP128_04_M02932 TRANSFAC + 13105822 13105835 8.0E-06 TGTATGTCTATACG 14 V_IRXB3_01_M01377 TRANSFAC - 13110973 13110989 2.0E-06 TTAGAACATGTAGAGCT 17 V_IRXB3_01_M01377 TRANSFAC + 13110974 13110990 3.0E-06 GCTCTACATGTTCTAAT 17 V_COUP_DR1_Q6_M00765 TRANSFAC + 13107025 13107037 8.0E-06 TGACCTGTGGGCT 13 V_PPARA_01_M00242 TRANSFAC - 13107025 13107044 5.0E-06 CTACAGTAGCCCACAGGTCA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.