Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

NEK2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 4751 NIMA-related kinase 2 chr1 - 211848472 - 211853972 211848972 Transcription Factor Binding Sites   Download all TFBS in the NEK2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints MYBL2_MYB_DBD_dimeric_15_1 SELEX + 211848956 211848970 1.0E-05 CCCCGTTTAACCGTC 15 Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX - 211849272 211849285 2.0E-06 GAGTGCAAAGGTCA 14 NR4A2_nuclearreceptor_full_monomeric_11_1 SELEX - 211849272 211849282 5.0E-06 TGCAAAGGTCA 11 SOX9_HMG_full_dimeric_16_1 SELEX - 211848790 211848805 8.0E-06 AGGACTATGAAGTGTT 16 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX - 211849268 211849280 1.0E-06 CAAAGGTCAGAAG 13 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX - 211849060 211849071 5.0E-06 ACTTTTCCCAAA 12 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX - 211849108 211849119 9.0E-06 GGTTCTCCCACA 12 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX - 211849272 211849285 1.0E-06 GAGTGCAAAGGTCA 14 NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX - 211849272 211849285 1.0E-06 GAGTGCAAAGGTCA 14 NFYA_MA0060.1 JASPAR - 211849019 211849034 0.0E+00 CTTAGCCAATGAGAGA 16 NR2F1_MA0017.1 JASPAR + 211849272 211849285 0.0E+00 TGACCTTTGCACTC 14 SPIB_ETS_DBD_monomeric_14_1 SELEX - 211851154 211851167 2.0E-06 CAAAAGCAGAAGTG 14 NR2F1_nuclearreceptor_DBD_dimeric_15_1 SELEX - 211849271 211849285 2.0E-06 GAGTGCAAAGGTCAG 15 RFX3_RFX_DBD_dimeric_15_1 SELEX + 211849071 211849085 1.0E-06 TGTCACTAGGCAACC 15 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX - 211849272 211849285 1.0E-06 GAGTGCAAAGGTCA 14 HNF4A_nuclearreceptor_full_dimeric_15_1 SELEX - 211849271 211849285 0.0E+00 GAGTGCAAAGGTCAG 15 RFX4_RFX_DBD_dimeric_15_1 SELEX + 211849071 211849085 3.0E-06 TGTCACTAGGCAACC 15 MYBL1_MYB_DBD_dimeric_12_1 SELEX - 211848958 211848969 1.0E-06 ACGGTTAAACGG 12 HNF4A_MA0114.1 JASPAR - 211849272 211849284 0.0E+00 AGTGCAAAGGTCA 13 HNF4A_nuclearreceptor_full_dimeric_14_1 SELEX - 211849272 211849285 0.0E+00 GAGTGCAAAGGTCA 14 SPI1_ETS_full_monomeric_14_1 SELEX - 211851154 211851167 2.0E-06 CAAAAGCAGAAGTG 14 RXRA_nuclearreceptor_full_dimeric_14_1 SELEX - 211849272 211849285 1.0E-06 GAGTGCAAAGGTCA 14 V_E2F4_Q6_M02090 TRANSFAC + 211849143 211849152 1.0E-05 GCGGGAGAGA 10 V_BACH2_01_M00490 TRANSFAC - 211849424 211849434 2.0E-06 CGTGAGTCACC 11 V_ZFP410_04_M02936 TRANSFAC + 211851114 211851130 4.0E-06 TTATCCTGCCCCAAATC 17 V_YY1_02_M00069 TRANSFAC + 211851200 211851219 8.0E-06 CCACCACCATCTTTGCACCT 20 V_NFY_Q6_M00185 TRANSFAC - 211849022 211849032 3.0E-06 TAGCCAATGAG 11 V_MTF1_Q4_M00650 TRANSFAC + 211849277 211849290 4.0E-06 TTTGCACTCTGGCC 14 V_FOXJ1_04_M02854 TRANSFAC + 211849036 211849050 2.0E-06 AGAACACAACAATAC 15 V_NR2F2_03_M02783 TRANSFAC - 211849268 211849283 9.0E-06 GTGCAAAGGTCAGAAG 16 V_HNF4ALPHA_Q6_M00638 TRANSFAC + 211849271 211849283 1.0E-06 CTGACCTTTGCAC 13 V_EAR2_Q2_M01728 TRANSFAC + 211849272 211849285 3.0E-06 TGACCTTTGCACTC 14 V_HNF4A_03_M02220 TRANSFAC - 211849272 211849284 0.0E+00 AGTGCAAAGGTCA 13 V_TR4_Q2_M01725 TRANSFAC + 211849270 211849280 2.0E-06 TCTGACCTTTG 11 V_PPAR_DR1_Q2_M00763 TRANSFAC + 211849272 211849284 2.0E-06 TGACCTTTGCACT 13 V_COUPTF_Q6_M01036 TRANSFAC + 211849267 211849289 0.0E+00 CCTTCTGACCTTTGCACTCTGGC 23 V_AIRE_02_M01000 TRANSFAC - 211849201 211849225 0.0E+00 CCTTAGATCTCGGTTACCTTGGCGA 25 V_PU1_Q4_M01172 TRANSFAC - 211849147 211849165 8.0E-06 AGCTGCCGCTTCCTCTCTC 19 V_LYF1_01_M00141 TRANSFAC + 211849060 211849068 9.0E-06 TTTGGGAAA 9 V_NFY_Q6_01_M00775 TRANSFAC - 211849023 211849035 0.0E+00 TCTTAGCCAATGA 13 V_HELIOSA_01_M01003 TRANSFAC + 211849059 211849069 9.0E-06 TTTTGGGAAAA 11 V_BARBIE_01_M00238 TRANSFAC - 211851155 211851169 9.0E-06 AGCAAAAGCAGAAGT 15 V_TRF1_01_M01237 TRANSFAC - 211849178 211849192 1.0E-06 AGAGGGTTAGAGTTG 15 V_PR_01_M00954 TRANSFAC - 211849030 211849056 6.0E-06 CCTAGGGTATTGTTGTGTTCTTCTTAG 27 V_HNF4_01_B_M00411 TRANSFAC - 211849271 211849285 0.0E+00 GAGTGCAAAGGTCAG 15 V_COUP_01_M00158 TRANSFAC + 211849272 211849285 0.0E+00 TGACCTTTGCACTC 14 V_STAF_01_M00262 TRANSFAC - 211849048 211849069 4.0E-06 TTTTCCCAAAATGCCTAGGGTA 22 V_RFX1_01_M00280 TRANSFAC + 211849070 211849086 5.0E-06 GTGTCACTAGGCAACCG 17 V_E47_02_M00071 TRANSFAC - 211851210 211851225 4.0E-06 AATCACAGGTGCAAAG 16 V_HNF4A_Q6_01_M02016 TRANSFAC - 211849269 211849283 1.0E-06 GTGCAAAGGTCAGAA 15 V_NR1B1_Q6_M02110 TRANSFAC - 211849270 211849279 2.0E-06 AAAGGTCAGA 10 V_CAAT_01_M00254 TRANSFAC - 211849023 211849034 1.0E-06 CTTAGCCAATGA 12 V_RARA_04_M02891 TRANSFAC + 211849353 211849368 7.0E-06 TGGGTGGGGTCACGTT 16 V_ALPHACP1_01_M00687 TRANSFAC - 211849022 211849032 1.0E-06 TAGCCAATGAG 11 V_MTF1_06_M02882 TRANSFAC + 211849393 211849406 1.0E-06 AAATTAGAAATACA 14 V_NFYC_Q5_M02107 TRANSFAC - 211849019 211849032 8.0E-06 TAGCCAATGAGAGA 14 V_TCFE2A_03_M02823 TRANSFAC - 211851209 211851225 0.0E+00 AATCACAGGTGCAAAGA 17 V_OCT2_01_M01368 TRANSFAC + 211849385 211849400 9.0E-06 CTGAATACAAATTAGA 16 V_DR1_Q3_M00762 TRANSFAC - 211849272 211849284 2.0E-06 AGTGCAAAGGTCA 13 V_FOXL1_02_M02857 TRANSFAC + 211849036 211849051 6.0E-06 AGAACACAACAATACC 16 V_OCT1_Q6_M00195 TRANSFAC + 211849385 211849399 3.0E-06 CTGAATACAAATTAG 15 V_FOXJ3_06_M02855 TRANSFAC + 211849035 211849051 2.0E-06 AAGAACACAACAATACC 17 V_ZSCAN4_04_M02942 TRANSFAC + 211849033 211849048 5.0E-06 AGAAGAACACAACAAT 16 V_PLAG1_01_M01778 TRANSFAC - 211848944 211848959 6.0E-06 GGGGCCCAAGGCAGGG 16 NR1H2_RXRA_MA0115.1 JASPAR - 211849270 211849286 7.0E-06 AGAGTGCAAAGGTCAGA 17 V_HNF4_Q6_01_M01031 TRANSFAC - 211849271 211849284 1.0E-06 AGTGCAAAGGTCAG 14 V_PARP_Q3_M01211 TRANSFAC + 211849396 211849405 3.0E-06 TTAGAAATAC 10 V_NFY_01_M00287 TRANSFAC - 211849019 211849034 0.0E+00 CTTAGCCAATGAGAGA 16 V_RARA_03_M02787 TRANSFAC - 211849268 211849283 8.0E-06 GTGCAAAGGTCAGAAG 16 V_NUR77_Q5_M01217 TRANSFAC + 211849271 211849280 7.0E-06 CTGACCTTTG 10 V_PIT1_Q6_M00802 TRANSFAC - 211849386 211849403 6.0E-06 ATTTCTAATTTGTATTCA 18 V_RXRLXRB_01_M01198 TRANSFAC - 211849272 211849284 2.0E-06 AGTGCAAAGGTCA 13 V_HNF4_01_M00134 TRANSFAC - 211849269 211849287 1.0E-06 CAGAGTGCAAAGGTCAGAA 19 V_NFYA_Q5_M02106 TRANSFAC - 211849019 211849032 1.0E-06 TAGCCAATGAGAGA 14 V_RFX1_02_M00281 TRANSFAC + 211849198 211849215 6.0E-06 AGATCGCCAAGGTAACCG 18 V_TR4_03_M01782 TRANSFAC - 211849272 211849284 2.0E-06 AGTGCAAAGGTCA 13 V_PPARG_01_M00512 TRANSFAC - 211849268 211849288 3.0E-06 CCAGAGTGCAAAGGTCAGAAG 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.