Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

NDUFB6 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 4712 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa chr9 - 32572682 - 32578182 32573182 Transcription Factor Binding Sites   Download all TFBS in the NDUFB6 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 32572453 32572471 0.0E+00 CAACCACCAGAGGGCACAG 19 TBX1_TBX_DBD_dimeric_20_2 SELEX - 32572499 32572518 8.0E-06 GTCTGACTTTTAAGTGTGAG 20 NHLH1_MA0048.1 JASPAR + 32573011 32573022 5.0E-06 TCGCAGCTGCTG 12 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 32574986 32575002 5.0E-06 AAAATCAAGTAAAAACC 17 SRY_HMG_DBD_dimeric_13_2 SELEX - 32572371 32572383 8.0E-06 TGAGTCACATTCA 13 SRF_MADS_DBD_dimeric_12_1 SELEX + 32573301 32573312 7.0E-06 ACCAAATTAGGA 12 TEF_bZIP_DBD_dimeric_12_1 SELEX + 32573177 32573188 1.0E-05 TATTACGTCACA 12 Creb5_bZIP_DBD_dimeric_12_1 SELEX + 32573177 32573188 3.0E-06 TATTACGTCACA 12 MSX1_homeodomain_full_monomeric_8_1 SELEX - 32575011 32575018 7.0E-06 CCAATTAA 8 JDP2_bZIP_full_dimeric_12_1 SELEX + 32573177 32573188 4.0E-06 TATTACGTCACA 12 MSX2_homeodomain_DBD_monomeric_8_1 SELEX - 32575011 32575018 7.0E-06 CCAATTAA 8 GBX2_homeodomain_full_monomeric_10_1 SELEX - 32575010 32575019 5.0E-06 ACCAATTAAG 10 RFX2_RFX_DBD_dimeric_15_1 SELEX + 32573401 32573415 7.0E-06 TTTTGCTAAGGAAGA 15 HMX3_homeodomain_DBD_monomeric_11_1 SELEX - 32575009 32575019 3.0E-06 ACCAATTAAGA 11 POU3F3_POU_DBD_monomeric_13_1 SELEX + 32573375 32573387 4.0E-06 AGTATGCTAAATT 13 Sox17_HMG_DBD_dimeric_15_2 SELEX - 32572370 32572384 6.0E-06 GTGAGTCACATTCAA 15 ATF7_bZIP_DBD_dimeric_14_1 SELEX + 32573176 32573189 4.0E-06 TTATTACGTCACAT 14 ATF7_bZIP_DBD_dimeric_14_1 SELEX - 32573176 32573189 4.0E-06 ATGTGACGTAATAA 14 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX + 32572500 32572515 4.0E-06 TCACACTTAAAAGTCA 16 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX - 32572500 32572515 5.0E-06 TGACTTTTAAGTGTGA 16 Gfi_MA0038.1 JASPAR + 32572536 32572545 2.0E-06 TAAATCACAG 10 Gfi_MA0038.1 JASPAR + 32577464 32577473 7.0E-06 TCAATCACTG 10 ATF4_bZIP_DBD_dimeric_13_1 SELEX - 32573177 32573189 8.0E-06 ATGTGACGTAATA 13 CTCF_C2H2_full_monomeric_17_1 SELEX + 32572454 32572470 1.0E-06 TGTGCCCTCTGGTGGTT 17 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX + 32573319 32573335 9.0E-06 GGGGACAAGGAGTACTC 17 NFIL3_bZIP_DBD_dimeric_12_1 SELEX + 32573177 32573188 3.0E-06 TATTACGTCACA 12 BSX_homeodomain_DBD_monomeric_8_1 SELEX - 32575011 32575018 7.0E-06 CCAATTAA 8 Msx3_homeodomain_DBD_monomeric_8_1 SELEX - 32575011 32575018 7.0E-06 CCAATTAA 8 POU2F1_POU_DBD_monomeric_12_1 SELEX + 32573375 32573386 7.0E-06 AGTATGCTAAAT 12 HLF_MA0043.1 JASPAR - 32573177 32573188 5.0E-06 TGTGACGTAATA 12 HMX2_homeodomain_DBD_monomeric_11_1 SELEX - 32575009 32575019 1.0E-06 ACCAATTAAGA 11 LBX2_homeodomain_DBD_monomeric_10_1 SELEX - 32575010 32575019 1.0E-05 ACCAATTAAG 10 Nobox_MA0125.1 JASPAR + 32575012 32575019 7.0E-06 TAATTGGT 8 NHLH1_bHLH_full_dimeric_10_1 SELEX + 32573012 32573021 4.0E-06 CGCAGCTGCT 10 NHLH1_bHLH_full_dimeric_10_1 SELEX - 32573012 32573021 5.0E-06 AGCAGCTGCG 10 HMX1_homeodomain_DBD_monomeric_11_1 SELEX - 32575009 32575019 2.0E-06 ACCAATTAAGA 11 V_HOXA9_01_M01351 TRANSFAC + 32574977 32574993 3.0E-06 CAGTCCATAAAAATCAA 17 V_SRF_Q6_M00186 TRANSFAC + 32573300 32573313 1.0E-06 GACCAAATTAGGAC 14 V_CEBPG_Q6_M00622 TRANSFAC - 32572313 32572325 1.0E-06 TTCATTAAAAAAA 13 V_CDX2_Q5_01_M01659 TRANSFAC + 32574980 32574990 2.0E-06 TCCATAAAAAT 11 V_FLI1_Q6_M01208 TRANSFAC - 32573183 32573193 4.0E-06 CAGGATGTGAC 11 V_OBOX5_05_M03066 TRANSFAC + 32572889 32572905 4.0E-06 CAAGGGGATTTATTCTC 17 V_ATF5_01_M01295 TRANSFAC - 32573407 32573417 6.0E-06 GTTCTTCCTTA 11 V_BCL6_01_M01183 TRANSFAC - 32573373 32573388 7.0E-06 TAATTTAGCATACTTT 16 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC + 32572910 32572921 8.0E-06 AATTTATTCCAG 12 V_CREB_Q4_M00178 TRANSFAC - 32573177 32573188 2.0E-06 TGTGACGTAATA 12 V_ISL2_01_M01328 TRANSFAC + 32572526 32572541 7.0E-06 CTCAAATACTTAAATC 16 V_OCT1_01_M00135 TRANSFAC + 32573372 32573390 3.0E-06 GAAAGTATGCTAAATTAGA 19 V_CREB_01_M00039 TRANSFAC - 32573179 32573186 1.0E-05 TGACGTAA 8 V_HOXD13_01_M01404 TRANSFAC + 32574977 32574992 5.0E-06 CAGTCCATAAAAATCA 16 V_BRN2_01_M00145 TRANSFAC + 32575050 32575065 1.0E-06 ATCATTCTAAATACAA 16 V_TCFAP2E_04_M02926 TRANSFAC - 32572312 32572325 5.0E-06 TTCATTAAAAAAAT 14 V_CDX_Q5_M00991 TRANSFAC + 32572629 32572646 7.0E-06 GAAAACCTAAGTATTAAA 18 V_HMGA2_01_M01300 TRANSFAC + 32572898 32572912 8.0E-06 TTATTCTCCAAAAAT 15 V_CP2_02_M00947 TRANSFAC - 32574991 32575005 2.0E-06 ACTGGTTTTTACTTG 15 V_ELF4_04_M02850 TRANSFAC - 32572311 32572327 1.0E-06 GTTTCATTAAAAAAATC 17 V_ELF4_04_M02850 TRANSFAC + 32572902 32572918 3.0E-06 TCTCCAAAAATTTATTC 17 V_SOX7_03_M02807 TRANSFAC + 32575054 32575075 4.0E-06 TTCTAAATACAATAGCCCTTGT 22 V_OBOX5_02_M01480 TRANSFAC + 32572889 32572905 4.0E-06 CAAGGGGATTTATTCTC 17 V_FOXA2_02_M02853 TRANSFAC - 32572564 32572578 5.0E-06 AATAATAACCAAGGA 15 V_HOXB13_01_M01467 TRANSFAC + 32574977 32574992 9.0E-06 CAGTCCATAAAAATCA 16 V_GFI1_01_M00250 TRANSFAC + 32572530 32572553 0.0E+00 AATACTTAAATCACAGAATTTTAA 24 V_POLY_C_M00212 TRANSFAC - 32572886 32572903 2.0E-06 GAATAAATCCCCTTGGAG 18 V_NKX61_01_M00424 TRANSFAC + 32575008 32575020 4.0E-06 CTCTTAATTGGTC 13 V_AMEF2_Q6_M00403 TRANSFAC + 32572638 32572655 2.0E-06 AGTATTAAAATTCGCCCC 18 V_HOXB9_01_M01426 TRANSFAC + 32574977 32574992 1.0E-06 CAGTCCATAAAAATCA 16 V_ZF5_B_M00333 TRANSFAC - 32573120 32573132 1.0E-06 CGGGAGCGCGCTT 13 V_NKX25_02_M00241 TRANSFAC + 32575010 32575017 7.0E-06 CTTAATTG 8 V_TTF1_Q6_M00794 TRANSFAC - 32572365 32572376 5.0E-06 CATTCAAGAGCT 12 V_TATA_C_M00216 TRANSFAC + 32574980 32574989 7.0E-06 TCCATAAAAA 10 V_ASCL2_03_M02737 TRANSFAC - 32573008 32573024 4.0E-06 TGCAGCAGCTGCGAGAG 17 V_ASCL2_03_M02737 TRANSFAC + 32573009 32573025 3.0E-06 TCTCGCAGCTGCTGCAG 17 V_ISRE_01_M00258 TRANSFAC + 32573029 32573043 2.0E-06 CAGTTTCTCATCCGG 15 V_JUNDM2_04_M02876 TRANSFAC - 32572373 32572388 7.0E-06 CCTTGTGAGTCACATT 16 V_CREBATF_Q6_M00981 TRANSFAC - 32573179 32573187 3.0E-06 GTGACGTAA 9 V_OCT1_04_M00138 TRANSFAC + 32573370 32573392 7.0E-06 ACGAAAGTATGCTAAATTAGAGG 23 V_OCT1_04_M00138 TRANSFAC - 32573433 32573455 3.0E-06 AAACATTTATGCTTATCCTTCCT 23 V_AR_04_M01201 TRANSFAC + 32573320 32573334 6.0E-06 GGGACAAGGAGTACT 15 V_NKX3A_01_M00451 TRANSFAC - 32572529 32572540 0.0E+00 ATTTAAGTATTT 12 V_SRF_Q5_02_M01007 TRANSFAC - 32573298 32573316 2.0E-06 CCGGTCCTAATTTGGTCGG 19 V_ARID3A_04_M02735 TRANSFAC - 32572313 32572329 1.0E-05 GTGTTTCATTAAAAAAA 17 V_CTCF_02_M01259 TRANSFAC - 32572455 32572474 0.0E+00 ATCCAACCACCAGAGGGCAC 20 V_CTCF_01_M01200 TRANSFAC - 32572453 32572472 0.0E+00 CCAACCACCAGAGGGCACAG 20 V_LUN1_01_M00480 TRANSFAC + 32573212 32573228 9.0E-06 CCCCAGATTCCTCGCGA 17 V_ATF1_03_M02738 TRANSFAC - 32573175 32573190 9.0E-06 GATGTGACGTAATAAC 16 V_GFI1B_01_M01058 TRANSFAC + 32572536 32572547 2.0E-06 TAAATCACAGAA 12 V_GFI1B_01_M01058 TRANSFAC + 32577464 32577475 1.0E-06 TCAATCACTGCA 12 V_ATF2_Q5_M01862 TRANSFAC - 32573178 32573189 5.0E-06 ATGTGACGTAAT 12 V_AIRE_01_M00999 TRANSFAC + 32575008 32575033 6.0E-06 CTCTTAATTGGTCCACTTGGTGGCAT 26 V_NKX22_01_M00485 TRANSFAC - 32572529 32572538 2.0E-06 TTAAGTATTT 10 V_CREB_Q2_M00177 TRANSFAC - 32573177 32573188 3.0E-06 TGTGACGTAATA 12 V_DOBOX5_01_M01463 TRANSFAC + 32572889 32572905 3.0E-06 CAAGGGGATTTATTCTC 17 V_FPM315_01_M01587 TRANSFAC + 32573425 32573436 6.0E-06 CTGGGAGGAGGA 12 V_ZBTB12_03_M02824 TRANSFAC - 32572487 32572503 5.0E-06 GTGAGGTTCTAGAGACC 17 V_OTX2_01_M01387 TRANSFAC + 32572889 32572905 5.0E-06 CAAGGGGATTTATTCTC 17 V_ASCL2_04_M02841 TRANSFAC - 32573311 32573326 5.0E-06 TTGTCCCCACCCGGTC 16 V_SRF_Q5_01_M00922 TRANSFAC + 32573302 32573316 5.0E-06 CCAAATTAGGACCGG 15 V_SRF_Q4_M00810 TRANSFAC + 32573301 32573318 3.0E-06 ACCAAATTAGGACCGGGT 18 V_OCT1_07_M00248 TRANSFAC + 32572544 32572555 7.0E-06 AGAATTTTAATT 12 V_SMAD3_Q6_M00701 TRANSFAC - 32572511 32572519 6.0E-06 TGTCTGACT 9 V_PITX2_01_M01447 TRANSFAC + 32572889 32572905 7.0E-06 CAAGGGGATTTATTCTC 17 V_BRN3C_01_M01408 TRANSFAC + 32572313 32572328 1.0E-05 TTTTTTTAATGAAACA 16 V_HOXA10_01_M01464 TRANSFAC + 32572636 32572651 9.0E-06 TAAGTATTAAAATTCG 16 V_GFI1_Q6_01_M02010 TRANSFAC - 32572536 32572545 3.0E-06 CTGTGATTTA 10 V_HOXD10_01_M01375 TRANSFAC + 32574977 32574993 4.0E-06 CAGTCCATAAAAATCAA 17 V_OBOX5_01_M01381 TRANSFAC + 32572889 32572905 8.0E-06 CAAGGGGATTTATTCTC 17 V_PBX1_04_M01357 TRANSFAC + 32575044 32575060 1.0E-06 GTACACATCATTCTAAA 17 V_ATATA_B_M00311 TRANSFAC + 32573114 32573123 9.0E-06 TTACTTAAGC 10 V_OTX1_01_M01366 TRANSFAC + 32572889 32572905 8.0E-06 CAAGGGGATTTATTCTC 17 V_OBOX6_06_M03067 TRANSFAC - 32572889 32572905 8.0E-06 GAGAATAAATCCCCTTG 17 V_DMRT5_01_M01150 TRANSFAC - 32577437 32577451 6.0E-06 TATTGTTACAGAAGT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.