Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

NDUFB4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 4710 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa chr3 + 120310127 - 120315627 120315127 Transcription Factor Binding Sites   Download all TFBS in the NDUFB4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX10_HMG_full_dimeric_15_3 SELEX + 120318909 120318923 7.0E-06 AGGAATTTCAGTCTG 15 RARB_nuclearreceptor_full_dimeric_16_1 SELEX - 120315620 120315635 5.0E-06 AACGTTCTTAAGGTCA 16 SPIC_ETS_full_monomeric_14_1 SELEX - 120315687 120315700 3.0E-06 TAAAAGAGTAAGCA 14 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 120316699 120316715 7.0E-06 GCATTAAAAAAGAATAA 17 SRY_HMG_DBD_dimeric_13_2 SELEX - 120315628 120315640 6.0E-06 TGAATAACGTTCT 13 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 120315670 120315683 6.0E-06 TATTACGCCCATTT 14 IRF8_IRF_full_dimeric_14_1 SELEX + 120316730 120316743 4.0E-06 CTGAAATTGAAACC 14 EWSR1-FLI1_MA0149.1 JASPAR - 120315594 120315611 4.0E-06 GGAAGTGATCAAGCCAGG 18 Esrrb_MA0141.1 JASPAR + 120315139 120315150 5.0E-06 AGCTGAAGGTCA 12 SOX7_HMG_full_dimeric_17_2 SELEX + 120315626 120315642 9.0E-06 TAAGAACGTTATTCACT 17 SOX7_HMG_full_dimeric_17_2 SELEX + 120318908 120318924 9.0E-06 GAGGAATTTCAGTCTGA 17 SOX15_HMG_full_dimeric_15_3 SELEX - 120315627 120315641 2.0E-06 GTGAATAACGTTCTT 15 KLF13_C2H2_full_monomeric_18_1 SELEX - 120315667 120315684 2.0E-06 ATATTACGCCCATTTTGC 18 POU4F3_POU_DBD_monomeric_16_1 SELEX + 120316697 120316712 1.0E-05 ATGCATTAAAAAAGAA 16 POU4F3_POU_DBD_monomeric_16_1 SELEX - 120316698 120316713 9.0E-06 ATTCTTTTTTAATGCA 16 IRF1_MA0050.1 JASPAR + 120316732 120316743 1.0E-06 GAAATTGAAACC 12 IRF1_MA0050.1 JASPAR - 120316779 120316790 3.0E-06 AAAATTGAAACT 12 POU3F3_POU_DBD_monomeric_13_1 SELEX - 120314900 120314912 8.0E-06 ATTATGTAAAGTT 13 SOX8_HMG_full_dimeric_13_1 SELEX + 120318909 120318921 1.0E-06 AGGAATTTCAGTC 13 SOX2_HMG_full_dimeric_15_1 SELEX - 120315627 120315641 9.0E-06 GTGAATAACGTTCTT 15 OTX2_homeodomain_DBD_monomeric_8_1 SELEX - 120315711 120315718 7.0E-06 TTAATCCT 8 SOX14_HMG_DBD_dimeric_15_1 SELEX - 120315627 120315641 2.0E-06 GTGAATAACGTTCTT 15 POU3F1_POU_DBD_monomeric_12_1 SELEX - 120314900 120314911 9.0E-06 TTATGTAAAGTT 12 PITX1_homeodomain_full_monomeric_9_1 SELEX - 120315711 120315719 2.0E-06 TTTAATCCT 9 IRF9_IRF_full_trimeric_15_1 SELEX + 120314789 120314803 1.0E-05 AAGGAAAAGGAAACT 15 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 120318838 120318851 1.0E-05 AGAAACTATTGACA 14 POU3F1_POU_DBD_monomeric_12_2 SELEX + 120316697 120316708 9.0E-06 ATGCATTAAAAA 12 POU2F1_POU_DBD_monomeric_12_1 SELEX - 120314901 120314912 6.0E-06 ATTATGTAAAGT 12 IRF4_IRF_full_dimeric_15_1 SELEX + 120316730 120316744 1.0E-06 CTGAAATTGAAACCA 15 ETS1_ETS_full_dimeric_18_1 SELEX + 120318933 120318950 9.0E-06 AACGGAAGCATTTCCATC 18 ETS1_ETS_full_dimeric_18_1 SELEX - 120318933 120318950 1.0E-05 GATGGAAATGCTTCCGTT 18 THRB_nuclearreceptor_DBD_dimeric_19_1 SELEX - 120315619 120315637 8.0E-06 ATAACGTTCTTAAGGTCAC 19 IRF3_IRF_full_trimeric_21_1 SELEX + 120314784 120314804 0.0E+00 AGGATAAGGAAAAGGAAACTC 21 IRF3_IRF_full_trimeric_21_1 SELEX + 120316724 120316744 2.0E-06 TCAGACCTGAAATTGAAACCA 21 NRF1_NRF_full_dimeric_12_1 SELEX - 120315023 120315034 1.0E-06 TGCGCATGCGCG 12 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 120318836 120318846 9.0E-06 AATGTCAATAG 11 NFE2L2_MA0150.1 JASPAR + 120314830 120314840 2.0E-06 GTGACACAGCA 11 Sox1_HMG_DBD_dimeric_15_2 SELEX - 120315627 120315641 6.0E-06 GTGAATAACGTTCTT 15 IRF2_MA0051.1 JASPAR + 120316731 120316748 4.0E-06 TGAAATTGAAACCAAGAT 18 V_BCL6_Q3_01_M02085 TRANSFAC + 120318846 120318855 4.0E-06 GTTTCTAGAA 10 V_FLI1_Q6_M01208 TRANSFAC - 120315603 120315613 0.0E+00 CAGGAAGTGAT 11 V_OBOX5_05_M03066 TRANSFAC + 120315707 120315723 7.0E-06 TGTTAGGATTAAATGAG 17 V_ISL1_Q6_M01127 TRANSFAC + 120315676 120315684 4.0E-06 GCGTAATAT 9 V_MAFK_03_M02776 TRANSFAC + 120315681 120315695 7.0E-06 ATATAGTGCTTACTC 15 V_CEBP_Q3_M00770 TRANSFAC - 120314903 120314914 8.0E-06 TTATTATGTAAA 12 V_ERR3_Q2_01_M02094 TRANSFAC - 120315618 120315630 9.0E-06 TCTTAAGGTCACG 13 V_ETS_B_M00340 TRANSFAC - 120315602 120315615 4.0E-06 GGCAGGAAGTGATC 14 V_IRF_Q6_01_M00972 TRANSFAC + 120316732 120316742 3.0E-06 GAAATTGAAAC 11 V_IRF_Q6_01_M00972 TRANSFAC - 120316780 120316790 3.0E-06 AAAATTGAAAC 11 V_IRF2_Q6_M01882 TRANSFAC + 120314790 120314805 2.0E-06 AGGAAAAGGAAACTCA 16 V_IRF2_Q6_M01882 TRANSFAC + 120316730 120316745 1.0E-06 CTGAAATTGAAACCAA 16 V_IRF2_Q6_M01882 TRANSFAC - 120316777 120316792 1.0E-06 AGAAAATTGAAACTAC 16 V_OCT1_01_M00135 TRANSFAC - 120314897 120314915 7.0E-06 CTTATTATGTAAAGTTGAG 19 V_NKX25_Q6_M02108 TRANSFAC - 120314810 120314820 1.0E-05 GTCACTTAAAG 11 V_IRF3_05_M02767 TRANSFAC + 120314791 120314804 2.0E-06 GGAAAAGGAAACTC 14 V_IRF3_05_M02767 TRANSFAC - 120316778 120316791 3.0E-06 GAAAATTGAAACTA 14 V_NERF_Q2_M00531 TRANSFAC - 120315123 120315140 3.0E-06 CTTCAGGAAGTGCGCCTG 18 V_SOX7_03_M02807 TRANSFAC + 120318779 120318800 3.0E-06 AATAATAAACAATGCTGCAGAA 22 V_OBOX5_02_M01480 TRANSFAC + 120315707 120315723 7.0E-06 TGTTAGGATTAAATGAG 17 V_HELIOSA_02_M01004 TRANSFAC + 120314787 120314797 4.0E-06 ATAAGGAAAAG 11 V_DBP_Q6_01_M01872 TRANSFAC - 120314904 120314911 5.0E-06 TTATGTAA 8 V_ZFP105_03_M02827 TRANSFAC + 120316701 120316715 2.0E-06 ATTAAAAAAGAATAA 15 V_TCFAP2C_03_M02821 TRANSFAC + 120316766 120316780 7.0E-06 TATGCCTCAGGGTAG 15 V_NGFIC_01_M00244 TRANSFAC + 120314970 120314981 9.0E-06 ATGAGTAGGTGG 12 V_IRF2_01_M00063 TRANSFAC - 120316779 120316791 1.0E-06 GAAAATTGAAACT 13 V_AMEF2_Q6_M00403 TRANSFAC - 120315673 120315690 5.0E-06 AGCACTATATTACGCCCA 18 V_IRF3_Q3_M01279 TRANSFAC - 120314788 120314800 8.0E-06 TTCCTTTTCCTTA 13 V_IRF_Q6_M00772 TRANSFAC - 120314792 120314806 3.0E-06 CTGAGTTTCCTTTTC 15 V_IRF_Q6_M00772 TRANSFAC - 120316732 120316746 1.0E-06 CTTGGTTTCAATTTC 15 V_IRF_Q6_M00772 TRANSFAC + 120316776 120316790 1.0E-06 GGTAGTTTCAATTTT 15 V_ISRE_01_M00258 TRANSFAC - 120314790 120314804 1.0E-06 GAGTTTCCTTTTCCT 15 V_ISRE_01_M00258 TRANSFAC - 120316730 120316744 3.0E-06 TGGTTTCAATTTCAG 15 V_ISRE_01_M00258 TRANSFAC + 120316778 120316792 0.0E+00 TAGTTTCAATTTTCT 15 V_DAX1_01_M01248 TRANSFAC + 120315137 120315156 1.0E-06 GAAGCTGAAGGTCAGCATAG 20 V_TEL2_Q6_M00678 TRANSFAC + 120315604 120315613 4.0E-06 TCACTTCCTG 10 V_ISGF3G_03_M02771 TRANSFAC + 120314791 120314805 6.0E-06 GGAAAAGGAAACTCA 15 V_ISGF3G_03_M02771 TRANSFAC + 120316731 120316745 1.0E-06 TGAAATTGAAACCAA 15 V_ISGF3G_03_M02771 TRANSFAC - 120316777 120316791 2.0E-06 GAAAATTGAAACTAC 15 V_IRF7_01_M00453 TRANSFAC + 120314789 120314806 2.0E-06 AAGGAAAAGGAAACTCAG 18 V_IRF7_01_M00453 TRANSFAC - 120316776 120316793 8.0E-06 GAGAAAATTGAAACTACC 18 V_VBP_01_M00228 TRANSFAC + 120314903 120314912 9.0E-06 TTTACATAAT 10 V_IRF5_03_M02769 TRANSFAC + 120316731 120316745 4.0E-06 TGAAATTGAAACCAA 15 V_IRF5_03_M02769 TRANSFAC - 120316777 120316791 9.0E-06 GAAAATTGAAACTAC 15 V_ERR1_Q2_M00511 TRANSFAC + 120315139 120315152 9.0E-06 AGCTGAAGGTCAGC 14 V_ZFP206_01_M01742 TRANSFAC + 120315174 120315184 4.0E-06 CGCGCAGGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 120315175 120315185 8.0E-06 TGCGCCTGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 120315233 120315243 5.0E-06 TGCGCAGGCTC 11 V_BDP1_01_M01796 TRANSFAC - 120315584 120315595 4.0E-06 GGATTCAAACCC 12 V_NRF1_Q6_M00652 TRANSFAC - 120315023 120315032 4.0E-06 CGCATGCGCG 10 V_NRF1_Q6_M00652 TRANSFAC + 120315025 120315034 2.0E-06 CGCATGCGCA 10 V_IRF6_04_M02874 TRANSFAC - 120315433 120315447 3.0E-06 GTCTCTCTCGGTCTC 15 V_SMAD_Q6_01_M00974 TRANSFAC - 120315661 120315671 9.0E-06 TTTGCAGACAG 11 V_IRF1_Q6_01_M01881 TRANSFAC - 120316731 120316744 4.0E-06 TGGTTTCAATTTCA 14 V_IRF1_Q6_01_M01881 TRANSFAC + 120316778 120316791 1.0E-06 TAGTTTCAATTTTC 14 V_TCFAP2A_03_M02819 TRANSFAC + 120316766 120316780 4.0E-06 TATGCCTCAGGGTAG 15 V_EWSR1FLI1_01_M02252 TRANSFAC - 120315594 120315611 4.0E-06 GGAAGTGATCAAGCCAGG 18 V_IRF1_01_M00062 TRANSFAC - 120316779 120316791 0.0E+00 GAAAATTGAAACT 13 V_PIT1_Q6_M00802 TRANSFAC - 120316697 120316714 8.0E-06 TATTCTTTTTTAATGCAT 18 V_NFE2L2_01_M02263 TRANSFAC + 120314830 120314840 2.0E-06 GTGACACAGCA 11 V_CEBP_Q2_01_M00912 TRANSFAC + 120314903 120314914 3.0E-06 TTTACATAATAA 12 V_CMAF_01_M01070 TRANSFAC + 120315682 120315700 5.0E-06 TATAGTGCTTACTCTTTTA 19 V_TCFAP2E_03_M02822 TRANSFAC + 120316766 120316780 3.0E-06 TATGCCTCAGGGTAG 15 V_HOXD10_01_M01375 TRANSFAC + 120316696 120316712 4.0E-06 GATGCATTAAAAAAGAA 17 V_OBOX5_01_M01381 TRANSFAC + 120315707 120315723 6.0E-06 TGTTAGGATTAAATGAG 17 V_BRF1_01_M01747 TRANSFAC + 120315584 120315596 5.0E-06 GGGTTTGAATCCT 13 V_OBOX6_06_M03067 TRANSFAC - 120315707 120315723 6.0E-06 CTCATTTAATCCTAACA 17 V_NANOG_02_M01247 TRANSFAC + 120316701 120316720 5.0E-06 ATTAAAAAAGAATAAGGCCT 20 V_HSF1_Q6_01_M02017 TRANSFAC + 120318843 120318856 8.0E-06 ATAGTTTCTAGAAC 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.