Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

NDUFB2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 4708 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa chr7 + 140391480 - 140396980 140396480 Transcription Factor Binding Sites   Download all TFBS in the NDUFB2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX10_HMG_full_dimeric_14_1 SELEX - 140395831 140395844 9.0E-06 TGAATGTCCCCTCA 14 Tp53_p53l_DBD_dimeric_18_2 SELEX + 140396749 140396766 1.0E-05 GGCATGCTGGGACCTGTA 18 HINFP1_C2H2_full_dimeric_20_1 SELEX + 140396959 140396978 9.0E-06 GCGGAGGAAGCAGCGTGCGC 20 Tp73_p53l_DBD_dimeric_18_1 SELEX - 140396749 140396766 4.0E-06 TACAGGTCCCAGCATGCC 18 EGR1_C2H2_full_monomeric_14_1 SELEX - 140396343 140396356 3.0E-06 AAAGCCCACGCATA 14 Creb5_bZIP_DBD_dimeric_12_1 SELEX - 140396453 140396464 1.0E-05 CGTGACGTCACA 12 Pax4_MA0068.1 JASPAR + 140396210 140396239 1.0E-06 AAAAAAAAAAAAAAAAAAGAATTATACACC 30 Pax4_MA0068.1 JASPAR + 140396211 140396240 2.0E-06 AAAAAAAAAAAAAAAAAGAATTATACACCA 30 Pax4_MA0068.1 JASPAR + 140396212 140396241 0.0E+00 AAAAAAAAAAAAAAAAGAATTATACACCAC 30 Pax4_MA0068.1 JASPAR + 140396213 140396242 2.0E-06 AAAAAAAAAAAAAAAGAATTATACACCACT 30 Pax4_MA0068.1 JASPAR + 140396214 140396243 1.0E-06 AAAAAAAAAAAAAAGAATTATACACCACTC 30 Pax4_MA0068.1 JASPAR + 140396215 140396244 1.0E-06 AAAAAAAAAAAAAGAATTATACACCACTCA 30 Pax4_MA0068.1 JASPAR + 140396216 140396245 1.0E-06 AAAAAAAAAAAAGAATTATACACCACTCAG 30 Pax4_MA0068.1 JASPAR + 140396218 140396247 8.0E-06 AAAAAAAAAAGAATTATACACCACTCAGTT 30 Hic1_C2H2_DBD_monomer_9_1 SELEX + 140395990 140395998 4.0E-06 ATGCCAACC 9 JDP2_bZIP_full_dimeric_12_1 SELEX - 140396453 140396464 8.0E-06 CGTGACGTCACA 12 ATF7_bZIP_DBD_dimeric_14_1 SELEX + 140396452 140396465 6.0E-06 CTGTGACGTCACGG 14 ATF7_bZIP_DBD_dimeric_14_1 SELEX - 140396452 140396465 5.0E-06 CCGTGACGTCACAG 14 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 140397341 140397350 6.0E-06 AGCAGCTGCC 10 Mafb_bZIP_DBD_dimeric_17_1 SELEX + 140397129 140397145 7.0E-06 AATGCTGAAAAATCACT 17 Mafb_bZIP_DBD_dimeric_17_1 SELEX - 140397129 140397145 6.0E-06 AGTGATTTTTCAGCATT 17 znf143_MA0088.1 JASPAR - 140396745 140396764 1.0E-06 CAGGTCCCAGCATGCCTCGG 20 CREB3_bZIP_full_dimeric_14_1 SELEX + 140396452 140396465 6.0E-06 CTGTGACGTCACGG 14 CREB3_bZIP_full_dimeric_14_1 SELEX - 140396452 140396465 3.0E-06 CCGTGACGTCACAG 14 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 140397127 140397147 3.0E-06 TTAATGCTGAAAAATCACTCT 21 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 140397127 140397147 5.0E-06 AGAGTGATTTTTCAGCATTAA 21 ZNF143_C2H2_DBD_monomeric_16_1 SELEX - 140396746 140396761 5.0E-06 GTCCCAGCATGCCTCG 16 MAFG_bZIP_full_dimeric_21_1 SELEX - 140397127 140397147 5.0E-06 AGAGTGATTTTTCAGCATTAA 21 Pou5f1_MA0142.1 JASPAR + 140397123 140397137 6.0E-06 CTTTTTAATGCTGAA 15 REST_MA0138.2 JASPAR - 140397037 140397057 6.0E-06 ACCGGGACCCTGGACCGCGCC 21 TP63_p53l_DBD_dimeric_18_1 SELEX + 140396749 140396766 9.0E-06 GGCATGCTGGGACCTGTA 18 RORA_2_MA0072.1 JASPAR + 140396398 140396411 3.0E-06 CTAATCTGGGTCAG 14 V_USF_Q6_M00187 TRANSFAC + 140397111 140397120 2.0E-06 GTCACGTGGC 10 V_MAX_Q6_M01830 TRANSFAC - 140397112 140397123 8.0E-06 GCGGCCACGTGA 12 V_ZFX_01_M01593 TRANSFAC - 140397019 140397034 3.0E-06 CCCTAGGCCTCACCGC 16 V_CREB_Q4_M00178 TRANSFAC + 140396453 140396464 5.0E-06 TGTGACGTCACG 12 V_CREB_Q4_M00178 TRANSFAC - 140396453 140396464 9.0E-06 CGTGACGTCACA 12 V_POU5F1_02_M02245 TRANSFAC + 140397123 140397137 6.0E-06 CTTTTTAATGCTGAA 15 V_CREB_Q4_01_M00917 TRANSFAC + 140396452 140396462 7.0E-06 CTGTGACGTCA 11 V_CREB_Q4_01_M00917 TRANSFAC - 140396455 140396465 5.0E-06 CCGTGACGTCA 11 V_JUNDM2_03_M02772 TRANSFAC + 140396451 140396466 9.0E-06 TCTGTGACGTCACGGG 16 V_JUNDM2_03_M02772 TRANSFAC - 140396451 140396466 5.0E-06 CCCGTGACGTCACAGA 16 V_STAF_01_M00262 TRANSFAC - 140396742 140396763 3.0E-06 AGGTCCCAGCATGCCTCGGGAC 22 V_AP2BETA_Q3_M01858 TRANSFAC + 140397296 140397311 1.0E-06 GCGGAGGGCTGGGGGT 16 V_SREBP_Q6_M01168 TRANSFAC - 140397185 140397199 2.0E-06 CCTCTCACCCGACGG 15 V_HIC1_05_M02763 TRANSFAC + 140395987 140396002 2.0E-06 CCTATGCCAACCCAGC 16 V_ASCL2_03_M02737 TRANSFAC - 140397337 140397353 0.0E+00 TTCGGCAGCTGCTCCCT 17 V_CREBATF_Q6_M00981 TRANSFAC + 140396454 140396462 9.0E-06 GTGACGTCA 9 V_CREBATF_Q6_M00981 TRANSFAC - 140396455 140396463 9.0E-06 GTGACGTCA 9 V_ATF3_Q6_M00513 TRANSFAC + 140396452 140396465 2.0E-06 CTGTGACGTCACGG 14 V_ATF3_Q6_M00513 TRANSFAC - 140397104 140397117 7.0E-06 ACGTGACGTCTCCG 14 V_PAX8_B_M00328 TRANSFAC + 140397400 140397417 8.0E-06 AGAGTCATGGATGATTCC 18 V_ATF1_Q6_M00691 TRANSFAC + 140396452 140396462 2.0E-06 CTGTGACGTCA 11 V_ATF1_Q6_M00691 TRANSFAC - 140396455 140396465 8.0E-06 CCGTGACGTCA 11 V_CREBP1_Q2_M00179 TRANSFAC - 140396453 140396464 4.0E-06 CGTGACGTCACA 12 V_MYOD_Q6_01_M00929 TRANSFAC + 140397337 140397354 2.0E-06 AGGGAGCAGCTGCCGAAG 18 V_LUN1_01_M00480 TRANSFAC + 140396392 140396408 8.0E-06 TCACAGCTAATCTGGGT 17 V_ATF1_03_M02738 TRANSFAC + 140396451 140396466 1.0E-06 TCTGTGACGTCACGGG 16 V_ATF1_03_M02738 TRANSFAC - 140396451 140396466 3.0E-06 CCCGTGACGTCACAGA 16 V_REST_02_M02256 TRANSFAC - 140397037 140397057 6.0E-06 ACCGGGACCCTGGACCGCGCC 21 V_P63_01_M01656 TRANSFAC + 140396748 140396767 8.0E-06 AGGCATGCTGGGACCTGTAG 20 V_P63_01_M01656 TRANSFAC - 140396748 140396767 7.0E-06 CTACAGGTCCCAGCATGCCT 20 V_SREBP1_Q5_M01173 TRANSFAC - 140397185 140397199 7.0E-06 CCTCTCACCCGACGG 15 V_PAX4_04_M00380 TRANSFAC + 140396210 140396239 0.0E+00 AAAAAAAAAAAAAAAAAAGAATTATACACC 30 V_PAX4_04_M00380 TRANSFAC + 140396212 140396241 0.0E+00 AAAAAAAAAAAAAAAAGAATTATACACCAC 30 V_PAX4_04_M00380 TRANSFAC + 140396213 140396242 9.0E-06 AAAAAAAAAAAAAAAGAATTATACACCACT 30 V_PAX4_04_M00380 TRANSFAC + 140396217 140396246 3.0E-06 AAAAAAAAAAAGAATTATACACCACTCAGT 30 V_PAX4_04_M00380 TRANSFAC + 140396219 140396248 4.0E-06 AAAAAAAAAGAATTATACACCACTCAGTTT 30 V_RORA2_01_M00157 TRANSFAC + 140396399 140396411 3.0E-06 TAATCTGGGTCAG 13 V_OCT4_01_M01125 TRANSFAC + 140397123 140397137 6.0E-06 CTTTTTAATGCTGAA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.