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NDUFA4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 4697 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa chr7 - 10979313 - 10984813 10979813 Transcription Factor Binding Sites   Download all TFBS in the NDUFA4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SPIC_ETS_full_monomeric_14_1 SELEX + 10979553 10979566 6.0E-06 TAAATGAGGACGTT 14 IRF7_IRF_DBD_trimeric_17_1 SELEX - 10980535 10980551 9.0E-06 AAATGAAAATTCGACTG 17 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 10978412 10978425 9.0E-06 TAAAAATGTTTAAA 14 ZNF238_C2H2_full_monomeric_13_1 SELEX - 10978436 10978448 0.0E+00 AATCCAGATGTTT 13 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 10978414 10978429 9.0E-06 TAAACATTTTTAAGTA 16 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 10979543 10979558 2.0E-06 TAAGTGGCTGTAAATG 16 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 10980335 10980350 4.0E-06 TAAAAACTAGTAAATG 16 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 10978414 10978429 7.0E-06 TAAACATTTTTAAGTA 16 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 10979543 10979558 2.0E-06 TAAGTGGCTGTAAATG 16 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 10980335 10980350 2.0E-06 TAAAAACTAGTAAATG 16 RFX2_RFX_DBD_dimeric_15_1 SELEX + 10979563 10979577 2.0E-06 CGTTCCCAGGGAACA 15 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 10978412 10978425 7.0E-06 TAAAAATGTTTAAA 14 ESR1_MA0112.2 JASPAR - 10979474 10979493 7.0E-06 GTCCCAGGCCTCTGTGACCC 20 RFX3_RFX_DBD_dimeric_15_1 SELEX + 10979563 10979577 8.0E-06 CGTTCCCAGGGAACA 15 HNF4A_nuclearreceptor_full_dimeric_15_1 SELEX + 10980408 10980422 9.0E-06 CGGTTGAAAGTTCGT 15 Myf_MA0055.1 JASPAR - 10980291 10980302 1.0E-06 AAGCAGCTGCAG 12 RREB1_MA0073.1 JASPAR - 10980548 10980567 5.0E-06 AAACAAAACAAAAGACAAAT 20 HNF1A_MA0046.1 JASPAR - 10979744 10979757 4.0E-06 AGATAATTTTTAGC 14 TEAD1_MA0090.1 JASPAR - 10980046 10980057 4.0E-06 CGCATTCCTCAG 12 V_FOXP1_01_M00987 TRANSFAC + 10980546 10980565 0.0E+00 TCATTTGTCTTTTGTTTTGT 20 V_FOXP3_Q4_M00992 TRANSFAC - 10979442 10979458 3.0E-06 GTGGGGTTTTGTCTGAC 17 V_GEN_INI_B_M00315 TRANSFAC - 10979554 10979561 1.0E-05 CCTCATTT 8 V_TCFE2A_04_M02927 TRANSFAC - 10978433 10978449 1.0E-06 CAATCCAGATGTTTGGT 17 V_FOXA2_04_M02749 TRANSFAC - 10979210 10979226 9.0E-06 TTTTGGTAAATAAGAGG 17 V_ESR1_01_M02261 TRANSFAC - 10979474 10979493 7.0E-06 GTCCCAGGCCTCTGTGACCC 20 V_HMGIY_Q3_M01010 TRANSFAC + 10979961 10979975 4.0E-06 CATGCATATTTCTGA 15 V_HMGIY_Q3_M01010 TRANSFAC + 10979975 10979989 2.0E-06 AGGGGAATTTTTTTG 15 V_NKX29_01_M01352 TRANSFAC - 10978420 10978436 1.0E-06 TGGTAAGTACTTAAAAA 17 V_NKX29_01_M01352 TRANSFAC + 10978421 10978437 4.0E-06 TTTTAAGTACTTACCAA 17 V_ZFP740_04_M02938 TRANSFAC - 10979968 10979984 2.0E-06 AAATTCCCCTCAGAAAT 17 V_RP58_01_M00532 TRANSFAC + 10978435 10978446 0.0E+00 CAAACATCTGGA 12 V_CEBP_01_M00159 TRANSFAC - 10978428 10978440 1.0E-06 TGTTTGGTAAGTA 13 V_TCFAP2E_04_M02926 TRANSFAC + 10979390 10979403 7.0E-06 AACTAGAAAAAACT 14 V_ETS_Q4_M00771 TRANSFAC + 10980295 10980306 1.0E-05 AGCTGCTTCCTG 12 V_HMBOX1_01_M01456 TRANSFAC + 10980336 10980352 0.0E+00 AAAAACTAGTAAATGAC 17 V_GEN_INI3_B_M00314 TRANSFAC - 10979554 10979561 1.0E-05 CCTCATTT 8 V_MYF_01_M01302 TRANSFAC - 10980291 10980302 1.0E-06 AAGCAGCTGCAG 12 V_STAF_01_M00262 TRANSFAC + 10979450 10979471 5.0E-06 AAACCCCACAATGCATGGCGTA 22 Hand1_Tcfe2a_MA0092.1 JASPAR - 10978454 10978463 7.0E-06 CGTCTGGCAT 10 V_KROX_Q6_M00982 TRANSFAC - 10980061 10980074 9.0E-06 TGCGCCCACGCTCC 14 V_AP1_Q6_01_M00925 TRANSFAC + 10980348 10980356 9.0E-06 ATGACTTAA 9 V_OCT1_05_M00161 TRANSFAC + 10980539 10980552 2.0E-06 CGAATTTTCATTTG 14 V_HNF1_Q6_01_M01011 TRANSFAC - 10979740 10979760 5.0E-06 TGCAGATAATTTTTAGCTTAG 21 V_NKX22_02_M01372 TRANSFAC - 10978418 10978434 6.0E-06 GTAAGTACTTAAAAATG 17 V_SFPI1_04_M02896 TRANSFAC + 10979032 10979045 4.0E-06 GTATTTAGGGAACC 14 V_SOX12_04_M02900 TRANSFAC - 10980544 10980559 4.0E-06 CAAAAGACAAATGAAA 16 V_TEF_01_M01305 TRANSFAC - 10980046 10980057 4.0E-06 CGCATTCCTCAG 12 V_NKX3A_01_M00451 TRANSFAC + 10978421 10978432 4.0E-06 TTTTAAGTACTT 12 V_NCX_02_M01420 TRANSFAC - 10978417 10978433 9.0E-06 TAAGTACTTAAAAATGT 17 V_SOX11_03_M02795 TRANSFAC - 10980550 10980566 1.0E-06 AACAAAACAAAAGACAA 17 V_ISGF4G_04_M02875 TRANSFAC + 10979611 10979624 4.0E-06 GGAAAACATTAGGA 14 V_AP1_Q2_01_M00924 TRANSFAC + 10980349 10980360 4.0E-06 TGACTTAAAGGT 12 V_NKX23_01_M01457 TRANSFAC + 10978421 10978436 0.0E+00 TTTTAAGTACTTACCA 16 V_NKX23_01_M01457 TRANSFAC - 10978421 10978436 0.0E+00 TGGTAAGTACTTAAAA 16 V_NKX32_02_M01482 TRANSFAC - 10978419 10978435 4.0E-06 GGTAAGTACTTAAAAAT 17 V_HAND1E47_01_M00222 TRANSFAC - 10978453 10978468 0.0E+00 TCTTGCGTCTGGCATT 16 V_FAC1_01_M00456 TRANSFAC - 10980549 10980562 2.0E-06 AAACAAAAGACAAA 14 V_AREB6_02_M00413 TRANSFAC - 10980353 10980364 9.0E-06 TATCACCTTTAA 12 V_HEN1_02_M00058 TRANSFAC - 10980286 10980307 9.0E-06 ACAGGAAGCAGCTGCAGTCTTC 22 V_FOXL1_04_M02753 TRANSFAC - 10979210 10979226 1.0E-05 TTTTGGTAAATAAGAGG 17 V_NKX3A_02_M01383 TRANSFAC - 10978420 10978436 0.0E+00 TGGTAAGTACTTAAAAA 17 V_NKX3A_02_M01383 TRANSFAC + 10978421 10978437 1.0E-06 TTTTAAGTACTTACCAA 17 V_MYOGNF1_01_M00056 TRANSFAC - 10978444 10978472 9.0E-06 TATCTCTTGCGTCTGGCATTGTTCAATCC 29 V_NCX_01_M00484 TRANSFAC + 10979540 10979549 4.0E-06 CGGTAAGTGG 10 V_ERR1_Q2_M00511 TRANSFAC + 10980351 10980364 8.0E-06 ACTTAAAGGTGATA 14 V_GEN_INI2_B_M00313 TRANSFAC - 10979554 10979561 1.0E-05 CCTCATTT 8 V_SMAD3_03_M02794 TRANSFAC + 10978452 10978468 1.0E-05 CAATGCCAGACGCAAGA 17 V_NKX22_01_M00485 TRANSFAC + 10978423 10978432 1.0E-06 TTAAGTACTT 10 V_MECP2_02_M01299 TRANSFAC + 10979044 10979053 2.0E-06 CCGGATTTAA 10 V_ETS1_B_M00339 TRANSFAC - 10980293 10980307 8.0E-06 ACAGGAAGCAGCTGC 15 V_SRF_06_M02916 TRANSFAC - 10979403 10979419 8.0E-06 CTCGGAAAAAAAACCTA 17 V_SOX2_Q6_M01272 TRANSFAC + 10980550 10980565 7.0E-06 TTGTCTTTTGTTTTGT 16 V_HNF1A_01_M02162 TRANSFAC - 10979744 10979757 4.0E-06 AGATAATTTTTAGC 14 V_CDPCR3_01_M00105 TRANSFAC - 10979960 10979974 6.0E-06 CAGAAATATGCATGG 15 V_NANOG_02_M01247 TRANSFAC - 10980549 10980568 0.0E+00 AAAACAAAACAAAAGACAAA 20 V_TCF11_01_M00285 TRANSFAC - 10979493 10979505 6.0E-06 GTCATCTTAGTTG 13 V_ER_Q6_M00191 TRANSFAC - 10979472 10979490 5.0E-06 CCAGGCCTCTGTGACCCTC 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.