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NDUFA3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 4696 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa chr19 + 54601159 - 54606659 54606159 Transcription Factor Binding Sites   Download all TFBS in the NDUFA3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Uncx_homeodomain_DBD_monomeric_8_1 SELEX - 54606941 54606948 9.0E-06 CTAATTAA 8 VSX1_homeodomain_full_monomeric_11_1 SELEX - 54606940 54606950 5.0E-06 TGCTAATTAAA 11 Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX + 54606361 54606374 1.0E-06 AGGGTTAGAGGTCA 14 LMX1A_homeodomain_DBD_monomeric_8_1 SELEX - 54606941 54606948 9.0E-06 CTAATTAA 8 ISX_homeodomain_full_monomeric_8_1 SELEX - 54606941 54606948 5.0E-06 CTAATTAA 8 ALX3_homeodomain_full_monomeric_10_1 SELEX + 54606940 54606949 6.0E-06 TTTAATTAGC 10 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX + 54606366 54606378 8.0E-06 TAGAGGTCACCGG 13 Shox2_homeodomain_DBD_monomeric_8_1 SELEX - 54606941 54606948 5.0E-06 CTAATTAA 8 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX + 54606361 54606374 2.0E-06 AGGGTTAGAGGTCA 14 NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX + 54606361 54606374 1.0E-06 AGGGTTAGAGGTCA 14 ESX1_homeodomain_full_monomeric_10_1 SELEX - 54606940 54606949 9.0E-06 GCTAATTAAA 10 Alx1_homeodomain_DBD_monomeric_10_1 SELEX + 54606940 54606949 5.0E-06 TTTAATTAGC 10 NKX6-2_homeodomain_full_monomeric_8_1 SELEX - 54606941 54606948 5.0E-06 CTAATTAA 8 PRRX2_homeodomain_full_monomeric_8_1 SELEX - 54606941 54606948 5.0E-06 CTAATTAA 8 Pax4_MA0068.1 JASPAR - 54608563 54608592 2.0E-06 AAAAAAAAAAAAAAAAAAAAGCCTTACAAA 30 LMX1B_homeodomain_full_monomeric_8_1 SELEX - 54606941 54606948 9.0E-06 CTAATTAA 8 HOXA1_homeodomain_DBD_monomeric_10_1 SELEX - 54606940 54606949 6.0E-06 GCTAATTAAA 10 NR2F1_MA0017.1 JASPAR - 54606361 54606374 2.0E-06 TGACCTCTAACCCT 14 TEAD1_TEA_full_monomeric_10_1 SELEX + 54608459 54608468 7.0E-06 AACATTCCTT 10 Foxq1_MA0040.1 JASPAR - 54605806 54605816 4.0E-06 TATAGTTTATG 11 HOXB2_homeodomain_DBD_monomeric_10_1 SELEX - 54606940 54606949 1.0E-05 GCTAATTAAA 10 RAX_homeodomain_DBD_monomeric_10_1 SELEX - 54606940 54606949 6.0E-06 GCTAATTAAA 10 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX + 54604249 54604258 9.0E-06 AAAAATTAGC 10 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX - 54606940 54606949 5.0E-06 GCTAATTAAA 10 SHOX_homeodomain_DBD_monomeric_8_1 SELEX - 54606941 54606948 9.0E-06 CTAATTAA 8 PRRX1_homeodomain_full_monomeric_8_1 SELEX - 54606941 54606948 5.0E-06 CTAATTAA 8 FOXI1_MA0042.1 JASPAR - 54604304 54604315 3.0E-06 TAGTATTTGTTT 12 NR2F1_nuclearreceptor_DBD_dimeric_15_1 SELEX + 54606361 54606375 1.0E-06 AGGGTTAGAGGTCAC 15 MEOX2_homeodomain_DBD_monomeric_10_1 SELEX - 54606940 54606949 9.0E-06 GCTAATTAAA 10 znf143_MA0088.1 JASPAR + 54606038 54606057 3.0E-06 CAACTCCCAGAGTGCTCCGC 20 znf143_MA0088.1 JASPAR + 54606134 54606153 6.0E-06 CAACTCCCAGGGTGCTCCGC 20 DLX6_homeodomain_DBD_monomeric_8_1 SELEX - 54606941 54606948 5.0E-06 CTAATTAA 8 NOTO_homeodomain_DBD_monomeric_10_1 SELEX - 54606940 54606949 7.0E-06 GCTAATTAAA 10 MIXL1_homeodomain_full_monomeric_10_1 SELEX - 54606940 54606949 6.0E-06 GCTAATTAAA 10 Vsx1_homeodomain_DBD_monomeric_8_1 SELEX - 54606941 54606948 5.0E-06 CTAATTAA 8 DLX3_homeodomain_DBD_monomeric_8_1 SELEX - 54606941 54606948 9.0E-06 CTAATTAA 8 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX + 54606361 54606374 1.0E-06 AGGGTTAGAGGTCA 14 GSX2_homeodomain_DBD_monomeric_10_1 SELEX - 54606940 54606949 2.0E-06 GCTAATTAAA 10 LHX2_homeodomain_DBD_monomeric_10_1 SELEX - 54606940 54606949 5.0E-06 GCTAATTAAA 10 LHX9_homeodomain_DBD_monomeric_8_1 SELEX - 54606941 54606948 5.0E-06 CTAATTAA 8 HOXB3_homeodomain_DBD_monomeric_10_1 SELEX - 54606940 54606949 9.0E-06 GCTAATTAAA 10 FEV_MA0156.1 JASPAR + 54604141 54604148 1.0E-05 CAGGAAAT 8 POU6F2_POU_full_monomeric_10_1 SELEX - 54606940 54606949 1.0E-06 GCTAATTAAA 10 Myf_MA0055.1 JASPAR + 54604054 54604065 4.0E-06 CAGCAGCTGGAG 12 MEOX1_homeodomain_full_monomeric_10_1 SELEX - 54606940 54606949 7.0E-06 GCTAATTAAA 10 LBX2_homeodomain_DBD_monomeric_10_1 SELEX - 54606940 54606949 3.0E-06 GCTAATTAAA 10 VDR_nuclearreceptor_full_dimeric_16_1 SELEX + 54606368 54606383 5.0E-06 GAGGTCACCGGGGGCA 16 GSX1_homeodomain_DBD_monomeric_10_1 SELEX - 54606940 54606949 4.0E-06 GCTAATTAAA 10 TEAD4_TEA_DBD_monomeric_10_1 SELEX + 54608459 54608468 4.0E-06 AACATTCCTT 10 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX + 54606360 54606374 6.0E-06 GAGGGTTAGAGGTCA 15 RAXL1_homeodomain_DBD_monomeric_8_1 SELEX - 54606941 54606948 5.0E-06 CTAATTAA 8 NRF1_NRF_full_dimeric_12_1 SELEX + 54605992 54606003 3.0E-06 TGCGCACGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 54605992 54606003 4.0E-06 TGCGCGTGCGCA 12 MNX1_homeodomain_DBD_monomeric_10_1 SELEX - 54606940 54606949 3.0E-06 GCTAATTAAA 10 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 54604283 54604295 3.0E-06 AAATAAATGAACA 13 RXRA_nuclearreceptor_full_dimeric_14_1 SELEX + 54606361 54606374 1.0E-06 AGGGTTAGAGGTCA 14 TBX1_TBX_DBD_dimeric_20_1 SELEX - 54606934 54606953 0.0E+00 CGGTGCTAATTAAAGTGTGA 20 Lhx4_homeodomain_DBD_monomeric_8_1 SELEX - 54606941 54606948 9.0E-06 CTAATTAA 8 V_NFAT_Q4_01_M00935 TRANSFAC + 54604245 54604254 3.0E-06 GTGGAAAAAT 10 V_HSF2_01_M00147 TRANSFAC - 54608457 54608466 1.0E-05 GGAATGTTCT 10 V_GEN_INI_B_M00315 TRANSFAC - 54604145 54604152 1.0E-05 CCTCATTT 8 V_GEN_INI_B_M00315 TRANSFAC + 54604178 54604185 1.0E-05 CCTCATTT 8 V_DEAF1_02_M01002 TRANSFAC + 54606221 54606245 3.0E-06 CGGGGCTCGGGTAGTTCTGGGAACC 25 V_LMAF_Q2_M01139 TRANSFAC + 54604051 54604059 6.0E-06 GGTCAGCAG 9 V_RELBP52_01_M01239 TRANSFAC - 54606862 54606871 6.0E-06 GGGGATTTTC 10 V_YY1_Q6_M00793 TRANSFAC - 54606183 54606191 7.0E-06 GCCATCTTT 9 V_HOXC4_01_M01369 TRANSFAC + 54606937 54606953 7.0E-06 CACTTTAATTAGCACCG 17 V_MAF_Q6_M00648 TRANSFAC - 54605946 54605961 9.0E-06 GTAAAGGAAGTGGTGT 16 V_HFH4_01_M00742 TRANSFAC + 54604284 54604296 7.0E-06 GTTCATTTATTTA 13 V_PPAR_DR1_Q2_M00763 TRANSFAC - 54606362 54606374 5.0E-06 TGACCTCTAACCC 13 V_COUPTF_Q6_M01036 TRANSFAC - 54606357 54606379 3.0E-06 CCCGGTGACCTCTAACCCTCTCG 23 V_ALX4_02_M01417 TRANSFAC + 54606937 54606953 7.0E-06 CACTTTAATTAGCACCG 17 V_CART1_03_M01453 TRANSFAC + 54606937 54606953 8.0E-06 CACTTTAATTAGCACCG 17 V_SRF_C_M00215 TRANSFAC + 54608508 54608522 1.0E-05 ACCCTAAATGGACTG 15 V_TAL1_Q6_M00993 TRANSFAC - 54604055 54604064 3.0E-06 TCCAGCTGCT 10 V_GEN_INI3_B_M00314 TRANSFAC - 54604145 54604152 1.0E-05 CCTCATTT 8 V_GEN_INI3_B_M00314 TRANSFAC + 54604178 54604185 1.0E-05 CCTCATTT 8 V_MYF_01_M01302 TRANSFAC + 54604054 54604065 4.0E-06 CAGCAGCTGGAG 12 V_COUP_01_M00158 TRANSFAC - 54606361 54606374 2.0E-06 TGACCTCTAACCCT 14 V_STAF_01_M00262 TRANSFAC + 54606039 54606060 2.0E-06 AACTCCCAGAGTGCTCCGCGTC 22 V_STAF_01_M00262 TRANSFAC + 54606135 54606156 8.0E-06 AACTCCCAGGGTGCTCCGCGTC 22 V_NFAT_Q6_M00302 TRANSFAC + 54604243 54604254 6.0E-06 CTGTGGAAAAAT 12 V_AP1_Q4_M00188 TRANSFAC + 54604037 54604047 1.0E-05 GGTGACTCACA 11 V_HOXA1_01_M01487 TRANSFAC - 54606938 54606953 5.0E-06 CGGTGCTAATTAAAGT 16 V_SOX_Q6_M01014 TRANSFAC + 54605974 54605986 3.0E-06 ATCTTTGTTCTGC 13 V_TATA_C_M00216 TRANSFAC + 54605811 54605820 4.0E-06 ACTATAAAAT 10 V_JUNDM2_04_M02876 TRANSFAC + 54604034 54604049 3.0E-06 AGGGGTGACTCACAGA 16 V_IRF3_06_M02871 TRANSFAC + 54604028 54604041 7.0E-06 GAAGAAAGGGGTGA 14 V_REX1_03_M01744 TRANSFAC + 54606184 54606195 1.0E-06 AAGATGGCTGCG 12 V_PPARG_03_M00528 TRANSFAC + 54606358 54606374 7.0E-06 GAGAGGGTTAGAGGTCA 17 V_OTP_01_M01323 TRANSFAC - 54606937 54606953 9.0E-06 CGGTGCTAATTAAAGTG 17 V_PNR_01_M01650 TRANSFAC + 54606361 54606374 4.0E-06 AGGGTTAGAGGTCA 14 V_HFH1_01_M00129 TRANSFAC - 54605805 54605816 1.0E-06 TATAGTTTATGT 12 V_HBP1_04_M02866 TRANSFAC - 54605785 54605801 5.0E-06 AAAGCCCATTTTACAGA 17 V_HBP1_04_M02866 TRANSFAC - 54605811 54605827 0.0E+00 AGTCCCCATTTTATAGT 17 V_HAND1E47_01_M00222 TRANSFAC - 54604162 54604177 6.0E-06 ATCTGGGTCTGGTTTT 16 V_TAL1_01_M01591 TRANSFAC - 54604023 54604035 1.0E-05 CTTTCTTCTCCCT 13 V_DR1_Q3_M00762 TRANSFAC + 54606362 54606374 8.0E-06 GGGTTAGAGGTCA 13 V_GEN_INI2_B_M00313 TRANSFAC - 54604145 54604152 1.0E-05 CCTCATTT 8 V_GEN_INI2_B_M00313 TRANSFAC + 54604178 54604185 1.0E-05 CCTCATTT 8 V_ZFP206_01_M01742 TRANSFAC - 54606090 54606100 7.0E-06 TGCGCGTGCGC 11 V_ZBTB12_03_M02824 TRANSFAC - 54608450 54608466 3.0E-06 GGAATGTTCTAGGCCAG 17 V_NRF1_Q6_M00652 TRANSFAC - 54605992 54606001 6.0E-06 CGCGTGCGCA 10 V_ALX4_03_M02944 TRANSFAC + 54606937 54606953 7.0E-06 CACTTTAATTAGCACCG 17 V_ZFP281_01_M01597 TRANSFAC - 54608482 54608492 5.0E-06 TGGGGGATGGG 11 V_STAT5A_01_M00457 TRANSFAC + 54606232 54606246 7.0E-06 TAGTTCTGGGAACCT 15 V_VAX1_01_M01397 TRANSFAC + 54606938 54606953 3.0E-06 ACTTTAATTAGCACCG 16 V_FOXJ2_01_M00422 TRANSFAC + 54604300 54604317 5.0E-06 CTAGAAACAAATACTAGT 18 V_SOX2_Q6_M01272 TRANSFAC + 54605971 54605986 6.0E-06 TCCATCTTTGTTCTGC 16 V_PAX4_02_M00377 TRANSFAC + 54604248 54604258 1.0E-06 GAAAAATTAGC 11 V_PIT1_Q6_M00802 TRANSFAC + 54605798 54605815 5.0E-06 CTTTCATACATAAACTAT 18 V_HOXD3_01_M01338 TRANSFAC - 54606938 54606953 5.0E-06 CGGTGCTAATTAAAGT 16 V_RXRLXRB_01_M01198 TRANSFAC + 54606362 54606374 4.0E-06 GGGTTAGAGGTCA 13 V_HNF4_01_M00134 TRANSFAC + 54606359 54606377 8.0E-06 AGAGGGTTAGAGGTCACCG 19 V_ZID_01_M00085 TRANSFAC + 54605967 54605979 8.0E-06 CGGCTCCATCTTT 13 V_FEV_01_M02269 TRANSFAC + 54604141 54604148 1.0E-05 CAGGAAAT 8 V_PAX4_04_M00380 TRANSFAC - 54608559 54608588 2.0E-06 AAAAAAAAAAAAAAAAGCCTTACAAACTGG 30 V_PAX4_04_M00380 TRANSFAC - 54608561 54608590 2.0E-06 AAAAAAAAAAAAAAAAAAGCCTTACAAACT 30 V_HOX13_02_M01452 TRANSFAC + 54606938 54606953 3.0E-06 ACTTTAATTAGCACCG 16 V_TR4_03_M01782 TRANSFAC + 54606362 54606374 0.0E+00 GGGTTAGAGGTCA 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.