Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MSMB Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 4477 microseminoprotein, beta- chr10 + 51544552 - 51550052 51549552 Transcription Factor Binding Sites   Download all TFBS in the MSMB promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints ZNF435_C2H2_full_dimeric_18_1 SELEX + 51553002 51553019 4.0E-06 AGTGTGTTCTGAGCATCT 18 Tp53_p53l_DBD_dimeric_18_2 SELEX + 51553054 51553071 3.0E-06 TTCATGTCGTGACATGTG 18 Tp53_p53l_DBD_dimeric_18_2 SELEX - 51553054 51553071 8.0E-06 CACATGTCACGACATGAA 18 Tp73_p53l_DBD_dimeric_18_1 SELEX + 51553054 51553071 3.0E-06 TTCATGTCGTGACATGTG 18 Tp73_p53l_DBD_dimeric_18_1 SELEX - 51553054 51553071 1.0E-06 CACATGTCACGACATGAA 18 SOX9_HMG_DBD_monomeric_9_1 SELEX + 51547594 51547602 4.0E-06 AAACAATAG 9 Pax4_MA0068.1 JASPAR - 51546401 51546430 1.0E-06 AAAAATTTCCCACACTTATACTAATTTCTT 30 NR4A2_nuclearreceptor_full_dimeric_17_1 SELEX + 51553052 51553068 6.0E-06 ATTTCATGTCGTGACAT 17 NR4A2_nuclearreceptor_full_dimeric_17_1 SELEX - 51553052 51553068 5.0E-06 ATGTCACGACATGAAAT 17 Ar_MA0007.1 JASPAR - 51547568 51547589 1.0E-06 TTAAGAACTTTGTGACCCAGAC 22 POU3F3_POU_DBD_monomeric_13_1 SELEX - 51546404 51546416 1.0E-05 CTTATACTAATTT 13 FIGLA_bHLH_DBD_dimeric_10_1 SELEX - 51553116 51553125 4.0E-06 AACACCTGGT 10 ZBED1_znf_BED_DBD_dimeric_13_1 SELEX + 51553057 51553069 3.0E-06 ATGTCGTGACATG 13 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 51547497 51547506 6.0E-06 AGCAGCTGCC 10 NFAT5_NFAT_DBD_dimeric_14_1 SELEX - 51553168 51553181 4.0E-06 ATGGAAAGAAACAA 14 Gata1_MA0035.2 JASPAR - 51546426 51546436 6.0E-06 TCAGATAAAAA 11 PPARG_MA0066.1 JASPAR - 51553128 51553147 1.0E-05 GTGGAGAACAGTGACTCAGA 20 SOX9_MA0077.1 JASPAR + 51547594 51547602 7.0E-06 AAACAATAG 9 Sox3_HMG_DBD_dimeric_17_1 SELEX + 51547594 51547610 8.0E-06 AAACAATAGAATTTACT 17 POU3F2_POU_DBD_monomeric_12_1 SELEX - 51546404 51546415 8.0E-06 TTATACTAATTT 12 TP63_p53l_DBD_dimeric_18_1 SELEX + 51553054 51553071 1.0E-06 TTCATGTCGTGACATGTG 18 TP63_p53l_DBD_dimeric_18_1 SELEX - 51553054 51553071 1.0E-06 CACATGTCACGACATGAA 18 RORA_2_MA0072.1 JASPAR + 51547606 51547619 7.0E-06 TTACTCTAGGTCAT 14 V_NFAT_Q4_01_M00935 TRANSFAC - 51553180 51553189 3.0E-06 GTGGAAAAAT 10 V_CDP_03_M01342 TRANSFAC - 51553068 51553084 0.0E+00 AGCAATTGATCACCACA 17 V_AP1_Q2_M00173 TRANSFAC - 51553128 51553138 0.0E+00 AGTGACTCAGA 11 V_NF1_Q6_01_M00806 TRANSFAC - 51547683 51547699 5.0E-06 CTGAACTTGTGCCAAGA 17 V_SATB1_Q3_M01723 TRANSFAC + 51546394 51546409 4.0E-06 TATCTTAAAGAAATTA 16 V_PROP1_01_M01294 TRANSFAC - 51546399 51546409 3.0E-06 TAATTTCTTTA 11 V_SRY_02_M00160 TRANSFAC + 51547592 51547603 3.0E-06 GCAAACAATAGA 12 V_IRF2_Q6_M01882 TRANSFAC - 51553171 51553186 5.0E-06 GAAAAATGGAAAGAAA 16 V_POU3F2_02_M00464 TRANSFAC - 51546406 51546415 1.0E-05 TTATACTAAT 10 V_CUX1_03_M02958 TRANSFAC - 51553068 51553084 0.0E+00 AGCAATTGATCACCACA 17 V_GABPA_04_M02858 TRANSFAC + 51553178 51553193 3.0E-06 CCATTTTTCCACTGCA 16 V_GATA_C_M00203 TRANSFAC - 51546424 51546434 8.0E-06 AGATAAAAATT 11 RXRA_VDR_MA0074.1 JASPAR + 51547572 51547586 9.0E-06 GGGTCACAAAGTTCT 15 V_ELF4_04_M02850 TRANSFAC - 51546422 51546438 1.0E-05 CTTCAGATAAAAATTTC 17 V_SOX7_03_M02807 TRANSFAC + 51547588 51547609 1.0E-06 AACTGCAAACAATAGAATTTAC 22 V_FOXA2_02_M02853 TRANSFAC - 51552975 51552989 7.0E-06 CCAAATAACAAGTCA 15 V_ZFP105_03_M02827 TRANSFAC - 51552976 51552990 1.0E-05 ACCAAATAACAAGTC 15 V_MYCMAX_02_M00123 TRANSFAC - 51553063 51553074 3.0E-06 CACCACATGTCA 12 V_NFAT_Q6_M00302 TRANSFAC - 51553180 51553191 0.0E+00 CAGTGGAAAAAT 12 V_AP1_Q4_M00188 TRANSFAC - 51553128 51553138 2.0E-06 AGTGACTCAGA 11 V_IK1_01_M00086 TRANSFAC + 51547455 51547467 0.0E+00 ACTTGGGAATACC 13 V_IK2_01_M00087 TRANSFAC + 51547455 51547466 6.0E-06 ACTTGGGAATAC 12 V_ERR1_Q3_M01841 TRANSFAC - 51547607 51547621 5.0E-06 AAATGACCTAGAGTA 15 V_ZBRK1_01_M01105 TRANSFAC + 51547393 51547407 6.0E-06 GGGGAGCAGTAGATG 15 V_GRE_C_M00205 TRANSFAC + 51547572 51547587 8.0E-06 GGGTCACAAAGTTCTT 16 V_GATA1_09_M02254 TRANSFAC - 51546426 51546436 6.0E-06 TCAGATAAAAA 11 V_NKX3A_01_M00451 TRANSFAC + 51546404 51546415 7.0E-06 AAATTAGTATAA 12 V_AP1_01_M00517 TRANSFAC - 51553127 51553139 7.0E-06 CAGTGACTCAGAA 13 V_IK3_01_M00088 TRANSFAC + 51547455 51547467 1.0E-06 ACTTGGGAATACC 13 V_SOX9_B1_M00410 TRANSFAC + 51547591 51547604 5.0E-06 TGCAAACAATAGAA 14 V_SOX15_03_M02799 TRANSFAC + 51547590 51547606 4.0E-06 CTGCAAACAATAGAATT 17 V_GATA1_04_M00128 TRANSFAC - 51546425 51546437 1.0E-06 TTCAGATAAAAAT 13 V_AP1FJ_Q2_M00172 TRANSFAC - 51553128 51553138 1.0E-06 AGTGACTCAGA 11 V_ZBTB3_03_M02825 TRANSFAC + 51553182 51553198 8.0E-06 TTTTCCACTGCAGTGAG 17 V_RBPJK_01_M01112 TRANSFAC + 51546415 51546425 4.0E-06 AGTGTGGGAAA 11 V_PLZF_02_M01075 TRANSFAC + 51546410 51546438 4.0E-06 GTATAAGTGTGGGAAATTTTTATCTGAAG 29 V_FOXJ2_01_M00422 TRANSFAC + 51547586 51547603 9.0E-06 TTAACTGCAAACAATAGA 18 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 51547711 51547718 1.0E-05 TGTGGTTT 8 V_YY1_01_M00059 TRANSFAC + 51553173 51553189 2.0E-06 TCTTTCCATTTTTCCAC 17 V_PIT1_Q6_M00802 TRANSFAC - 51546390 51546407 4.0E-06 ATTTCTTTAAGATAAATT 18 V_TFE_Q6_M01029 TRANSFAC + 51553084 51553091 1.0E-05 TCATGTGA 8 V_BARX1_01_M01340 TRANSFAC + 51546400 51546415 8.0E-06 AAAGAAATTAGTATAA 16 V_VDRRXR_01_M01202 TRANSFAC + 51547572 51547586 9.0E-06 GGGTCACAAAGTTCT 15 V_NF1_Q6_M00193 TRANSFAC + 51547683 51547700 6.0E-06 TCTTGGCACAAGTTCAGG 18 V_ER_Q6_M00191 TRANSFAC - 51547552 51547570 2.0E-06 GACAGTGACTGTGACCTAT 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.