Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MSH2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 4436 mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) chr2 + 47625205 - 47630705 47630205 Transcription Factor Binding Sites   Download all TFBS in the MSH2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 47629894 47629906 1.0E-06 GAAAACAAAAAAA 13 Foxa2_MA0047.2 JASPAR - 47630032 47630043 1.0E-06 TGTTTACTCAGC 12 SP3_C2H2_DBD_monomeric_11_1 SELEX - 47630279 47630289 6.0E-06 CCCACACCCAC 11 YY2_C2H2_full_dimeric_12_1 SELEX + 47633112 47633123 8.0E-06 GCCTGCCGCCAT 12 FOXA1_MA0148.1 JASPAR - 47630033 47630043 1.0E-06 TGTTTACTCAG 11 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 47628204 47628215 3.0E-06 AAAACAAACAAA 12 FOXL1_forkhead_full_dimeric_13_1 SELEX + 47628202 47628214 1.0E-06 AAAAAACAAACAA 13 FOXL1_forkhead_full_dimeric_13_1 SELEX - 47629895 47629907 5.0E-06 TGAAAACAAAAAA 13 FOXL1_forkhead_full_dimeric_13_1 SELEX + 47630894 47630906 3.0E-06 TATTAACAAACAG 13 EWSR1-FLI1_MA0149.1 JASPAR + 47630255 47630272 9.0E-06 GGAGGGGAGGCGGGAAAC 18 NFYA_MA0060.1 JASPAR - 47630155 47630170 8.0E-06 GGCAACCAATCATAAG 16 POU2F2_POU_DBD_monomeric_11_1 SELEX - 47632154 47632164 7.0E-06 TTATGTAAAAT 11 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 47629699 47629712 8.0E-06 TATAAATGTTTTCG 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 47629699 47629712 1.0E-06 CGAAAACATTTATA 14 Pax4_MA0068.1 JASPAR - 47629871 47629900 4.0E-06 AAAAAAAAAACTAGCCTTCCTCCTCCTCCC 30 Pax4_MA0068.1 JASPAR - 47629872 47629901 3.0E-06 CAAAAAAAAAACTAGCCTTCCTCCTCCTCC 30 Pax4_MA0068.1 JASPAR - 47629875 47629904 6.0E-06 AAACAAAAAAAAAACTAGCCTTCCTCCTCC 30 Pax4_MA0068.1 JASPAR - 47629876 47629905 4.0E-06 AAAACAAAAAAAAAACTAGCCTTCCTCCTC 30 RFX2_RFX_DBD_dimeric_15_1 SELEX + 47631686 47631700 8.0E-06 GTTTGCTAGGGAGAG 15 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 47629699 47629712 9.0E-06 TATAAATGTTTTCG 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 47629699 47629712 2.0E-06 CGAAAACATTTATA 14 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 47628203 47628213 1.0E-06 AAAAACAAACA 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 47629896 47629906 9.0E-06 GAAAACAAAAA 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 47630895 47630905 7.0E-06 ATTAACAAACA 11 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX - 47629893 47629906 2.0E-06 GAAAACAAAAAAAA 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 47629699 47629712 6.0E-06 TATAAATGTTTTCG 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 47629699 47629712 5.0E-06 CGAAAACATTTATA 14 SP1_C2H2_DBD_monomeric_11_1 SELEX - 47631759 47631769 5.0E-06 ACCCCACCCAC 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 47628203 47628213 1.0E-06 AAAAACAAACA 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 47629896 47629906 9.0E-06 GAAAACAAAAA 11 POU3F1_POU_DBD_monomeric_12_1 SELEX - 47632153 47632164 1.0E-05 TTATGTAAAATC 12 Foxd3_MA0041.1 JASPAR - 47628201 47628212 0.0E+00 GTTTGTTTTTTT 12 Foxd3_MA0041.1 JASPAR - 47628205 47628216 4.0E-06 CTTTGTTTGTTT 12 Klf12_C2H2_DBD_monomeric_15_1 SELEX - 47630210 47630224 2.0E-06 GACCACACCCAATCA 15 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 47629699 47629712 6.0E-06 TATAAATGTTTTCG 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 47629699 47629712 4.0E-06 CGAAAACATTTATA 14 Hltf_MA0109.1 JASPAR - 47629700 47629709 1.0E-05 AAACATTTAT 10 POU2F1_POU_DBD_monomeric_12_1 SELEX - 47632154 47632165 8.0E-06 CTTATGTAAAAT 12 HSFY2_HSF_DBD_dimeric_9_1 SELEX + 47629708 47629716 8.0E-06 TTTCGAATG 9 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 47628201 47628213 0.0E+00 AAAAAAACAAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 47628201 47628213 1.0E-05 AAAAAAACAAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 47628203 47628215 8.0E-06 AAAAACAAACAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 47629894 47629906 0.0E+00 GAAAACAAAAAAA 13 RORA_2_MA0072.1 JASPAR - 47632141 47632154 2.0E-06 TCTATGTAGGTCAG 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 47629893 47629906 0.0E+00 GAAAACAAAAAAAA 14 V_RUSH1A_02_M01107 TRANSFAC - 47629700 47629709 1.0E-05 AAACATTTAT 10 V_FOXP1_01_M00987 TRANSFAC + 47629893 47629912 0.0E+00 TTTTTTTTGTTTTCAAGTTT 20 V_NFKB_Q6_01_M00774 TRANSFAC - 47633080 47633095 1.0E-06 TGCAGGGAAACTCCCA 16 V_FOXA2_04_M02749 TRANSFAC + 47628202 47628218 8.0E-06 AAAAAACAAACAAAGGT 17 V_NFY_Q6_M00185 TRANSFAC - 47630158 47630168 9.0E-06 CAACCAATCAT 11 V_FOXD3_01_M00130 TRANSFAC - 47628201 47628212 1.0E-06 GTTTGTTTTTTT 12 V_FOXD3_01_M00130 TRANSFAC - 47628205 47628216 4.0E-06 CTTTGTTTGTTT 12 V_FOXO4_02_M00476 TRANSFAC + 47629896 47629909 5.0E-06 TTTTTGTTTTCAAG 14 V_SRY_02_M00160 TRANSFAC + 47629857 47629868 8.0E-06 TTTAACAAAATA 12 V_SRY_02_M00160 TRANSFAC - 47629895 47629906 1.0E-06 GAAAACAAAAAA 12 V_NFAT3_Q3_M01734 TRANSFAC + 47630821 47630830 1.0E-05 TCATTTTCCA 10 V_FOXO3A_Q1_M01137 TRANSFAC - 47629896 47629907 1.0E-06 TGAAAACAAAAA 12 V_HNF3_Q6_01_M01012 TRANSFAC - 47628201 47628218 0.0E+00 ACCTTTGTTTGTTTTTTT 18 V_HNF3_Q6_01_M01012 TRANSFAC - 47630031 47630048 1.0E-06 TTCTGTGTTTACTCAGCT 18 V_FOXJ1_03_M02750 TRANSFAC + 47628204 47628219 5.0E-06 AAAACAAACAAAGGTT 16 V_FOXJ1_03_M02750 TRANSFAC + 47630034 47630049 4.0E-06 TGAGTAAACACAGAAA 16 V_HFH4_01_M00742 TRANSFAC - 47628204 47628216 0.0E+00 CTTTGTTTGTTTT 13 V_TCFAP2E_04_M02926 TRANSFAC - 47629890 47629903 2.0E-06 AACAAAAAAAAAAC 14 V_TCFAP2E_04_M02926 TRANSFAC - 47629891 47629904 2.0E-06 AAACAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 47629892 47629905 1.0E-06 AAAACAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 47629898 47629911 8.0E-06 AACTTGAAAACAAA 14 V_AR_03_M00956 TRANSFAC + 47630797 47630823 1.0E-05 GGCATTTTAATGCATTGTTCTAGTTCA 27 V_ELF4_04_M02850 TRANSFAC - 47629888 47629904 2.0E-06 AAACAAAAAAAAAACTA 17 V_SOX13_03_M02797 TRANSFAC - 47630805 47630820 4.0E-06 ACTAGAACAATGCATT 16 V_SOX7_03_M02807 TRANSFAC - 47629889 47629910 4.0E-06 ACTTGAAAACAAAAAAAAAACT 22 V_FOXA2_02_M02853 TRANSFAC + 47628200 47628214 5.0E-06 CAAAAAAACAAACAA 15 V_FOXA2_02_M02853 TRANSFAC + 47628204 47628218 6.0E-06 AAAACAAACAAAGGT 15 V_DBP_Q6_01_M01872 TRANSFAC - 47632157 47632164 5.0E-06 TTATGTAA 8 V_FREAC3_01_M00291 TRANSFAC + 47630032 47630047 2.0E-06 GCTGAGTAAACACAGA 16 V_ZFP105_03_M02827 TRANSFAC + 47628199 47628213 7.0E-06 TCAAAAAAACAAACA 15 V_ZFP105_03_M02827 TRANSFAC - 47629889 47629903 1.0E-06 AACAAAAAAAAAACT 15 V_ZFP105_03_M02827 TRANSFAC - 47629892 47629906 1.0E-05 GAAAACAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 47629893 47629907 1.0E-06 TGAAAACAAAAAAAA 15 V_FOXO1_02_M00474 TRANSFAC + 47629896 47629909 7.0E-06 TTTTTGTTTTCAAG 14 V_HNF3G_Q4_M02015 TRANSFAC - 47628206 47628213 7.0E-06 TGTTTGTT 8 V_HNF3G_Q4_M02015 TRANSFAC - 47630898 47630905 7.0E-06 TGTTTGTT 8 V_POLY_C_M00212 TRANSFAC - 47630791 47630808 6.0E-06 CATTAAAATGCCTGGCAC 18 V_CEBPB_02_M00117 TRANSFAC + 47628152 47628165 9.0E-06 AGATTGCGCCACTG 14 V_HNF3A_01_M01261 TRANSFAC + 47630035 47630044 8.0E-06 GAGTAAACAC 10 V_MAZ_Q6_01_M02023 TRANSFAC + 47630252 47630265 9.0E-06 GTGGGAGGGGAGGC 14 V_HNF3_Q6_M00791 TRANSFAC + 47628203 47628215 0.0E+00 AAAAACAAACAAA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 47628203 47628213 0.0E+00 TGTTTGTTTTT 11 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 47630895 47630905 6.0E-06 TGTTTGTTAAT 11 V_CDX2_Q5_M00729 TRANSFAC - 47629694 47629707 8.0E-06 ACATTTATATGGCC 14 V_MATH1_Q2_M01716 TRANSFAC + 47629975 47629984 9.0E-06 CCACCTGGTG 10 V_SOX18_03_M02801 TRANSFAC + 47630806 47630821 1.0E-05 ATGCATTGTTCTAGTT 16 V_OCT1_04_M00138 TRANSFAC - 47632148 47632170 0.0E+00 AAAGTCTTATGTAAAATCTATGT 23 V_SOX12_04_M02900 TRANSFAC + 47630039 47630054 8.0E-06 AAACACAGAAAGGAGC 16 V_CDC5_01_M00478 TRANSFAC + 47629855 47629866 1.0E-06 GTTTTAACAAAA 12 V_CTCF_02_M01259 TRANSFAC - 47629972 47629991 7.0E-06 AGGTTGCCACCAGGTGGGAG 20 V_SOX11_03_M02795 TRANSFAC - 47629892 47629908 1.0E-06 TTGAAAACAAAAAAAAA 17 V_SOX11_03_M02795 TRANSFAC - 47630804 47630820 1.0E-06 ACTAGAACAATGCATTA 17 V_SOX9_B1_M00410 TRANSFAC - 47630806 47630819 6.0E-06 CTAGAACAATGCAT 14 V_ISGF4G_04_M02875 TRANSFAC - 47629699 47629712 8.0E-06 CGAAAACATTTATA 14 V_NKX23_01_M01457 TRANSFAC + 47632911 47632926 7.0E-06 TGTTAGGTGCTTGATA 16 V_FOXO1_Q5_M01216 TRANSFAC + 47628203 47628211 1.0E-06 AAAAACAAA 9 V_FOXO1_Q5_M01216 TRANSFAC - 47629898 47629906 5.0E-06 GAAAACAAA 9 V_HFH8_01_M00294 TRANSFAC - 47628204 47628216 9.0E-06 CTTTGTTTGTTTT 13 V_SOX15_03_M02799 TRANSFAC - 47629892 47629908 6.0E-06 TTGAAAACAAAAAAAAA 17 V_MTF1_06_M02882 TRANSFAC - 47629891 47629904 1.0E-06 AAACAAAAAAAAAA 14 V_NFYC_Q5_M02107 TRANSFAC - 47630206 47630219 2.0E-06 CACCCAATCAGCTT 14 V_FAC1_01_M00456 TRANSFAC + 47628200 47628213 9.0E-06 CAAAAAAACAAACA 14 V_FAC1_01_M00456 TRANSFAC - 47629891 47629904 1.0E-06 AAACAAAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC - 47629893 47629906 8.0E-06 GAAAACAAAAAAAA 14 V_GATA1_04_M00128 TRANSFAC - 47632945 47632957 4.0E-06 ATGAGATAAGGGT 13 V_FOXL1_02_M02857 TRANSFAC + 47629853 47629868 3.0E-06 ACGTTTTAACAAAATA 16 V_FOXL1_02_M02857 TRANSFAC - 47629890 47629905 7.0E-06 AAAACAAAAAAAAAAC 16 V_FOXL1_02_M02857 TRANSFAC - 47629895 47629910 7.0E-06 ACTTGAAAACAAAAAA 16 V_NFY_01_M00287 TRANSFAC - 47630155 47630170 5.0E-06 GGCAACCAATCATAAG 16 V_FPM315_01_M01587 TRANSFAC + 47629869 47629880 6.0E-06 CTGGGAGGAGGA 12 V_FPM315_01_M01587 TRANSFAC + 47629872 47629883 3.0E-06 GGAGGAGGAGGA 12 V_NRF2_Q4_M00821 TRANSFAC - 47629717 47629729 1.0E-05 TTGATGATTCACT 13 V_SPIC_02_M02077 TRANSFAC - 47628190 47628199 6.0E-06 AGAGGAAGTC 10 V_FOXA2_03_M02260 TRANSFAC - 47630032 47630043 1.0E-06 TGTTTACTCAGC 12 V_FOX_Q2_M00809 TRANSFAC - 47628204 47628216 0.0E+00 CTTTGTTTGTTTT 13 V_EGR1_06_M02744 TRANSFAC - 47630610 47630623 6.0E-06 ACCGCCCACTCTCT 14 V_SOX8_03_M02808 TRANSFAC + 47630804 47630820 6.0E-06 TAATGCATTGTTCTAGT 17 V_DMRT2_01_M01147 TRANSFAC + 47630799 47630814 1.0E-05 CATTTTAATGCATTGT 16 V_SRF_06_M02916 TRANSFAC + 47628198 47628214 5.0E-06 CTCAAAAAAACAAACAA 17 V_SRF_06_M02916 TRANSFAC - 47629887 47629903 8.0E-06 AACAAAAAAAAAACTAG 17 V_SRF_06_M02916 TRANSFAC - 47629888 47629904 0.0E+00 AAACAAAAAAAAAACTA 17 V_SRF_06_M02916 TRANSFAC - 47629889 47629905 6.0E-06 AAAACAAAAAAAAAACT 17 V_SRF_06_M02916 TRANSFAC - 47629890 47629906 3.0E-06 GAAAACAAAAAAAAAAC 17 V_SRF_06_M02916 TRANSFAC - 47629891 47629907 6.0E-06 TGAAAACAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 47629892 47629908 2.0E-06 TTGAAAACAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 47629893 47629909 1.0E-06 CTTGAAAACAAAAAAAA 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 47630255 47630272 9.0E-06 GGAGGGGAGGCGGGAAAC 18 V_FOXJ2_01_M00422 TRANSFAC + 47628201 47628218 0.0E+00 AAAAAAACAAACAAAGGT 18 V_EKLF_Q5_M01874 TRANSFAC - 47630279 47630288 9.0E-06 CCACACCCAC 10 V_FOXO1_01_M00473 TRANSFAC + 47628202 47628211 2.0E-06 AAAAAACAAA 10 V_PR_02_M00957 TRANSFAC + 47630797 47630823 5.0E-06 GGCATTTTAATGCATTGTTCTAGTTCA 27 V_HNF3B_Q6_M02014 TRANSFAC - 47628206 47628214 1.0E-05 TTGTTTGTT 9 V_DR3_Q4_M00966 TRANSFAC - 47630511 47630531 2.0E-06 CATGTACTTGATCACCCCCTG 21 V_SOX12_03_M02796 TRANSFAC + 47629896 47629909 5.0E-06 TTTTTGTTTTCAAG 14 V_FREAC4_01_M00292 TRANSFAC + 47630032 47630047 1.0E-06 GCTGAGTAAACACAGA 16 V_FOXO4_01_M00472 TRANSFAC + 47628203 47628213 5.0E-06 AAAAACAAACA 11 V_NFYA_Q5_M02106 TRANSFAC - 47630155 47630168 3.0E-06 CAACCAATCATAAG 14 V_HOXD10_01_M01375 TRANSFAC - 47630796 47630812 5.0E-06 AATGCATTAAAATGCCT 17 V_TCF3_05_M02920 TRANSFAC - 47629890 47629904 3.0E-06 AAACAAAAAAAAAAC 15 V_GLIS2_04_M02863 TRANSFAC + 47630892 47630905 3.0E-06 CTTATTAACAAACA 14 V_SEF1_C_M00214 TRANSFAC - 47629424 47629442 7.0E-06 AAAACCCACGTCTGTGATC 19 V_EVI1_03_M00080 TRANSFAC - 47632949 47632959 6.0E-06 AGATGAGATAA 11 V_FOXK1_03_M02752 TRANSFAC - 47629895 47629911 1.0E-05 AACTTGAAAACAAAAAA 17 V_PAX4_04_M00380 TRANSFAC - 47629871 47629900 0.0E+00 AAAAAAAAAACTAGCCTTCCTCCTCCTCCC 30 V_PAX4_04_M00380 TRANSFAC - 47629874 47629903 6.0E-06 AACAAAAAAAAAACTAGCCTTCCTCCTCCT 30 V_SMAD1_01_M01590 TRANSFAC - 47629895 47629906 5.0E-06 GAAAACAAAAAA 12 V_PAX2_02_M00486 TRANSFAC + 47629784 47629792 8.0E-06 AATAAACCC 9 V_RORA2_01_M00157 TRANSFAC - 47632141 47632153 3.0E-06 CTATGTAGGTCAG 13 V_PAX6_01_M00097 TRANSFAC + 47629703 47629723 4.0E-06 AATGTTTTCGAATGAGTGAAT 21 V_SPIB_03_M02076 TRANSFAC - 47628190 47628199 7.0E-06 AGAGGAAGTC 10 V_NANOG_02_M01247 TRANSFAC + 47628199 47628218 2.0E-06 TCAAAAAAACAAACAAAGGT 20 V_NANOG_02_M01247 TRANSFAC - 47629891 47629910 1.0E-06 ACTTGAAAACAAAAAAAAAA 20 V_OCT4_01_M01125 TRANSFAC - 47632155 47632169 7.0E-06 AAGTCTTATGTAAAA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.