Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TARM1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 441864 chr19 + 54579634 - 54589634 0 Transcription Factor Binding Sites   Download all TFBS in the TARM1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX4_HMG_DBD_dimeric_16_1 SELEX - 54580907 54580922 4.0E-06 GAACATTTTGGGTGTT 16 SPIC_ETS_full_monomeric_14_1 SELEX - 54580769 54580782 1.0E-06 AAAAAGAGGAAATC 14 SOX2_HMG_full_dimeric_17_1 SELEX - 54580923 54580939 3.0E-06 GGACACTTACGTTGTTT 17 Sox17_HMG_DBD_dimeric_15_1 SELEX - 54580924 54580938 9.0E-06 GACACTTACGTTGTT 15 SPIB_ETS_DBD_monomeric_14_1 SELEX - 54580769 54580782 2.0E-06 AAAAAGAGGAAATC 14 SPIB_ETS_DBD_monomeric_14_1 SELEX + 54580815 54580828 2.0E-06 AAAAAGGAGAAGTT 14 SOX18_HMG_full_dimeric_15_1 SELEX - 54580924 54580938 8.0E-06 GACACTTACGTTGTT 15 SOX15_HMG_full_dimeric_15_1 SELEX - 54580924 54580938 4.0E-06 GACACTTACGTTGTT 15 SPI1_ETS_full_monomeric_14_1 SELEX - 54580769 54580782 6.0E-06 AAAAAGAGGAAATC 14 SPI1_ETS_full_monomeric_14_1 SELEX + 54580815 54580828 1.0E-06 AAAAAGGAGAAGTT 14 ELF5_MA0136.1 JASPAR - 54580895 54580903 5.0E-06 AATTTCCTT 9 SOX9_HMG_full_dimeric_17_1 SELEX + 54580923 54580939 5.0E-06 AAACAACGTAAGTGTCC 17 V_POU3F3_01_M03090 TRANSFAC + 54580884 54580900 6.0E-06 AAGTTTTGCAAAAGGAA 17 V_CEBP_Q3_M00770 TRANSFAC + 54580884 54580895 0.0E+00 AAGTTTTGCAAA 12 V_ETS_B_M00340 TRANSFAC - 54580766 54580779 7.0E-06 AAGAGGAAATCTCT 14 V_OCTAMER_01_M01324 TRANSFAC + 54580884 54580900 6.0E-06 AAGTTTTGCAAAAGGAA 17 V_GLI1_Q2_M01042 TRANSFAC + 54580906 54580915 7.0E-06 GAACACCCAA 10 V_CETS1P54_02_M00074 TRANSFAC + 54580892 54580904 8.0E-06 CAAAAGGAAATTG 13 V_TEF_Q6_M00672 TRANSFAC + 54580917 54580928 3.0E-06 ATGTTCAAACAA 12 V_ELF5_01_M01197 TRANSFAC + 54580893 54580903 1.0E-06 AAAAGGAAATT 11 V_ZIC3_05_M02941 TRANSFAC + 54580803 54580817 5.0E-06 GGTCTCAGCAGGAAA 15 V_ELF1_Q6_M00746 TRANSFAC - 54580770 54580781 0.0E+00 AAAAGAGGAAAT 12 V_ZIC2_05_M02940 TRANSFAC + 54580803 54580817 7.0E-06 GGTCTCAGCAGGAAA 15 V_STAT6_02_M00500 TRANSFAC + 54580769 54580776 1.0E-05 GATTTCCT 8 V_ELF5_04_M02241 TRANSFAC - 54580895 54580903 5.0E-06 AATTTCCTT 9 V_CEBP_Q2_01_M00912 TRANSFAC - 54580884 54580895 6.0E-06 TTTGCAAAACTT 12 V_ZIC1_05_M02939 TRANSFAC + 54580803 54580817 6.0E-06 GGTCTCAGCAGGAAA 15 V_CEBPA_Q6_M01866 TRANSFAC + 54580884 54580896 0.0E+00 AAGTTTTGCAAAA 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.