Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

GLRA4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 441509 glycine receptor, alpha 4 chrX - 102983052 - 102988552 102983552 Transcription Factor Binding Sites   Download all TFBS in the GLRA4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 102982149 102982167 7.0E-06 CAGGCAGAAGGGGGCACCA 19 Sox1_HMG_DBD_dimeric_14_1 SELEX + 102987576 102987589 9.0E-06 TGAATGGACCTTCA 14 MYF6_bHLH_full_dimeric_10_1 SELEX - 102985693 102985702 9.0E-06 AACAAATGTT 10 SOX10_HMG_full_dimeric_14_1 SELEX - 102987576 102987589 2.0E-06 TGAAGGTCCATTCA 14 Tp53_p53l_DBD_dimeric_18_1 SELEX - 102985280 102985297 5.0E-06 GCAGGAGAAGTGACATGT 18 SPIC_ETS_full_monomeric_14_1 SELEX + 102985820 102985833 7.0E-06 AAAATGAGAAAGCA 14 SPIC_ETS_full_monomeric_14_1 SELEX + 102986200 102986213 7.0E-06 AACAACAGGAAGCA 14 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 102986495 102986506 7.0E-06 GCTAAAAATGGA 12 SRY_HMG_DBD_dimeric_13_2 SELEX - 102986441 102986453 6.0E-06 TGAAAAACATTTT 13 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX - 102986247 102986258 9.0E-06 ACTCTTCCCACA 12 ZNF435_C2H2_full_dimeric_18_1 SELEX + 102984378 102984395 0.0E+00 TGTGTTATCTAAACACCT 18 Mafb_bZIP_DBD_monomeric_12_1 SELEX - 102986231 102986242 3.0E-06 AAAATGCTGAGG 12 EWSR1-FLI1_MA0149.1 JASPAR - 102985120 102985137 6.0E-06 GGAAACAAGGAGGGAGGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 102986115 102986132 2.0E-06 GGGAGAAAGGGAGGTAAA 18 ZNF232_C2H2_full_monomeric_19_1 SELEX + 102986493 102986511 0.0E+00 CTGCTAAAAATGGATTAAG 19 SOX8_HMG_DBD_dimeric_14_1 SELEX - 102987576 102987589 5.0E-06 TGAAGGTCCATTCA 14 Creb5_bZIP_DBD_dimeric_12_1 SELEX + 102985798 102985809 5.0E-06 CATGACGTAATG 12 Creb5_bZIP_DBD_dimeric_12_1 SELEX - 102985798 102985809 5.0E-06 CATTACGTCATG 12 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX - 102985804 102985817 1.0E-06 CTTATTATCATTAC 14 JDP2_bZIP_full_dimeric_12_1 SELEX + 102985798 102985809 5.0E-06 CATGACGTAATG 12 JDP2_bZIP_full_dimeric_12_1 SELEX - 102985798 102985809 4.0E-06 CATTACGTCATG 12 MEF2B_MADS_full_dimeric_12_1 SELEX + 102986495 102986506 9.0E-06 GCTAAAAATGGA 12 HOXA5_MA0158.1 JASPAR - 102985685 102985692 7.0E-06 CACTAATT 8 ATF7_bZIP_DBD_dimeric_14_1 SELEX + 102985797 102985810 5.0E-06 GCATGACGTAATGA 14 ATF7_bZIP_DBD_dimeric_14_1 SELEX - 102985797 102985810 6.0E-06 TCATTACGTCATGC 14 SP1_MA0079.2 JASPAR + 102983700 102983709 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR + 102984407 102984416 3.0E-06 CCCCTCCCCC 10 ATF4_bZIP_DBD_dimeric_13_1 SELEX + 102985797 102985809 1.0E-05 GCATGACGTAATG 13 Atf4_bZIP_DBD_dimeric_14_1 SELEX + 102985796 102985809 4.0E-06 AGCATGACGTAATG 14 NFATC1_NFAT_full_dimeric_15_1 SELEX + 102986240 102986254 2.0E-06 TTTCTGCTGTGGGAA 15 NFATC1_NFAT_full_dimeric_15_1 SELEX - 102986240 102986254 4.0E-06 TTCCCACAGCAGAAA 15 ZNF143_C2H2_DBD_monomeric_16_1 SELEX - 102985706 102985721 7.0E-06 TGCCCAGGATGCATCT 16 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 102985683 102985700 9.0E-06 GCAATTAGTGAACATTTG 18 ERF_ETS_DBD_monomeric_10_1 SELEX - 102985259 102985268 9.0E-06 ACAGGAAGTG 10 Pou5f1_MA0142.1 JASPAR + 102986469 102986483 3.0E-06 TTTTGTCATGAAAAA 15 Myf_MA0055.1 JASPAR + 102986162 102986173 9.0E-06 AAACAGCAGGAG 12 FOXI1_forkhead_full_dimeric_17_1 SELEX - 102985130 102985146 5.0E-06 ATGCTTAAAGGAAACAA 17 TEAD1_TEA_full_dimeric_17_1 SELEX - 102986178 102986194 4.0E-06 GAATTCTTCCAATTCCC 17 CREB3L1_bZIP_full_dimeric_12_1 SELEX + 102986548 102986559 2.0E-06 TGCCACGTTTCA 12 CREB3L1_bZIP_full_dimeric_12_1 SELEX - 102986548 102986559 3.0E-06 TGAAACGTGGCA 12 CPEB1_RRM_full_monomeric_8_1 SELEX - 102985835 102985842 4.0E-06 AATAAAAA 8 Mafb_bZIP_DBD_dimeric_18_1 SELEX + 102982301 102982318 3.0E-06 TTTGCAGACGCAAGCAGC 18 Mafb_bZIP_DBD_dimeric_18_1 SELEX + 102986223 102986240 2.0E-06 AAAGATGACCTCAGCATT 18 Mafb_bZIP_DBD_dimeric_18_1 SELEX - 102986223 102986240 1.0E-06 AATGCTGAGGTCATCTTT 18 MAFK_bZIP_full_monomeric_12_1 SELEX - 102986232 102986243 3.0E-06 GAAAATGCTGAG 12 EMX1_homeodomain_DBD_dimeric_14_1 SELEX - 102985887 102985900 5.0E-06 CCATTAGCTAAGAA 14 Sox2_MA0143.1 JASPAR + 102986468 102986482 5.0E-06 ATTTTGTCATGAAAA 15 Hic1_C2H2_DBD_dimeric_18_1 SELEX + 102982151 102982168 8.0E-06 GTGCCCCCTTCTGCCTGC 18 TP63_p53l_DBD_dimeric_18_1 SELEX + 102986330 102986347 8.0E-06 ATCATGTTCCAAAATGTA 18 TP63_p53l_DBD_dimeric_18_1 SELEX - 102986330 102986347 8.0E-06 TACATTTTGGAACATGAT 18 RREB1_MA0073.1 JASPAR + 102983705 102983724 8.0E-06 CCCCCCACCTCCCACTCCCG 20 GLIS2_C2H2_DBD_monomeric_14_1 SELEX - 102985205 102985218 8.0E-06 GACCCCCAGCAAGG 14 V_DMRT4_01_M01149 TRANSFAC - 102986574 102986586 6.0E-06 ACAGTTGCAATTT 13 V_CEBPG_Q6_M00622 TRANSFAC - 102986468 102986480 2.0E-06 TTCATGACAAAAT 13 V_OBOX6_01_M01445 TRANSFAC + 102986498 102986512 6.0E-06 AAAAATGGATTAAGC 15 V_KLF15_Q2_M01714 TRANSFAC + 102985223 102985236 8.0E-06 GGGGAGGGGTGTGG 14 V_MEQCJUN_02_M02048 TRANSFAC - 102986227 102986237 7.0E-06 GCTGAGGTCAT 11 V_FLI1_Q6_M01208 TRANSFAC - 102985257 102985267 2.0E-06 CAGGAAGTGAG 11 V_TBX15_01_M01263 TRANSFAC - 102984377 102984395 2.0E-06 AGGTGTTTAGATAACACAC 19 V_BACH2_01_M00490 TRANSFAC + 102988096 102988106 7.0E-06 CCTGAGTCATC 11 V_BTEB3_Q5_M01865 TRANSFAC + 102986246 102986258 3.0E-06 CTGTGGGAAGAGT 13 V_CEBP_Q3_M00770 TRANSFAC + 102986655 102986666 8.0E-06 TTGTTTGGTAAA 12 V_ATF4_Q6_M01864 TRANSFAC - 102985798 102985806 6.0E-06 TACGTCATG 9 V_ETS_B_M00340 TRANSFAC + 102986203 102986216 4.0E-06 AACAGGAAGCAACA 14 V_GATA3_03_M00351 TRANSFAC + 102986459 102986468 1.0E-06 AAAGATATTA 10 V_STAT_Q6_M00777 TRANSFAC + 102982324 102982336 2.0E-06 GATGTTTCTTGGA 13 V_POU5F1_02_M02245 TRANSFAC + 102986469 102986483 3.0E-06 TTTTGTCATGAAAAA 15 V_SATB1_Q3_M01723 TRANSFAC + 102986453 102986468 9.0E-06 AGAATGAAAGATATTA 16 V_SOX5_01_M00042 TRANSFAC - 102986652 102986661 7.0E-06 CAAACAATAC 10 V_FOXJ2_02_M00423 TRANSFAC - 102986459 102986472 0.0E+00 AAAATAATATCTTT 14 V_CEBP_01_M00159 TRANSFAC - 102986215 102986227 6.0E-06 TCTTTGGAAAGTG 13 V_CEBP_01_M00159 TRANSFAC + 102986656 102986668 0.0E+00 TGTTTGGTAAATT 13 V_AP4_Q6_M00176 TRANSFAC - 102982183 102982192 5.0E-06 CACAGCTGGA 10 V_HOXD1_01_M01448 TRANSFAC - 102985678 102985694 6.0E-06 TTCACTAATTGCCTATA 17 V_ATF3_Q6_01_M01863 TRANSFAC - 102985798 102985808 2.0E-06 ATTACGTCATG 11 V_SP1_03_M02281 TRANSFAC + 102983700 102983709 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC + 102984407 102984416 3.0E-06 CCCCTCCCCC 10 V_CREB_01_M00039 TRANSFAC + 102985800 102985807 1.0E-05 TGACGTAA 8 V_JUNDM2_03_M02772 TRANSFAC + 102985796 102985811 7.0E-06 AGCATGACGTAATGAT 16 V_GKLF_02_M01588 TRANSFAC - 102985226 102985237 4.0E-06 GCCACACCCCTC 12 V_NERF_Q2_M00531 TRANSFAC - 102985253 102985270 5.0E-06 CCACAGGAAGTGAGTTAC 18 V_SP1_02_M01303 TRANSFAC - 102983698 102983708 3.0E-06 GGGGCGGGGGG 11 V_PU1_Q4_M01172 TRANSFAC + 102984410 102984428 6.0E-06 CTCCCCCATTTCCTCTTGC 19 V_PU1_Q4_M01172 TRANSFAC + 102986349 102986367 5.0E-06 CGCACCCTTTTCCTGTTTT 19 V_ATF4_Q2_M00514 TRANSFAC + 102985798 102985809 0.0E+00 CATGACGTAATG 12 V_CDP_04_M01344 TRANSFAC + 102985805 102985819 2.0E-06 TAATGATAATAAGGA 15 V_CDP_04_M01344 TRANSFAC - 102985805 102985819 8.0E-06 TCCTTATTATCATTA 15 V_TAL1_GATA1_01_M02243 TRANSFAC + 102986583 102986600 3.0E-06 CTGTGCCCTGCTGATAAG 18 V_BARBIE_01_M00238 TRANSFAC - 102986282 102986296 4.0E-06 AGAAAAAGGTTATGG 15 V_RPC155_01_M01798 TRANSFAC - 102982013 102982028 5.0E-06 TCTGGAGTCCAAGTCC 16 V_ETS_Q4_M00771 TRANSFAC + 102985256 102985267 1.0E-06 ACTCACTTCCTG 12 V_ELF4_04_M02850 TRANSFAC + 102986472 102986488 1.0E-05 TGTCATGAAAAAACTAC 17 V_ZNF219_01_M01122 TRANSFAC + 102983696 102983707 7.0E-06 CTCCCCCCGCCC 12 V_MTERF_01_M01245 TRANSFAC + 102986650 102986663 2.0E-06 GGGTATTGTTTGGT 14 V_HELIOSA_02_M01004 TRANSFAC + 102985813 102985823 0.0E+00 ATAAGGAAAAA 11 V_MYF_01_M01302 TRANSFAC + 102986162 102986173 9.0E-06 AAACAGCAGGAG 12 V_OCT1_03_M00137 TRANSFAC + 102985801 102985813 8.0E-06 GACGTAATGATAA 13 V_E4BP4_01_M00045 TRANSFAC + 102985798 102985809 1.0E-05 CATGACGTAATG 12 V_CART1_01_M00416 TRANSFAC + 102985802 102985819 1.0E-05 ACGTAATGATAATAAGGA 18 V_CART1_01_M00416 TRANSFAC - 102985802 102985819 2.0E-06 TCCTTATTATCATTACGT 18 V_NFAT_Q6_M00302 TRANSFAC + 102985813 102985824 1.0E-05 ATAAGGAAAAAT 12 V_ZBP89_Q4_M01816 TRANSFAC + 102984408 102984417 4.0E-06 CCCTCCCCCA 10 V_RSRFC4_Q2_M00407 TRANSFAC + 102986493 102986509 4.0E-06 CTGCTAAAAATGGATTA 17 V_AP1_Q6_01_M00925 TRANSFAC - 102988097 102988105 7.0E-06 ATGACTCAG 9 V_HOXA3_07_M02869 TRANSFAC + 102986499 102986512 6.0E-06 AAAATGGATTAAGC 14 V_SP1_Q6_M00196 TRANSFAC - 102983698 102983710 6.0E-06 GGGGGGCGGGGGG 13 V_IRF3_Q3_M01279 TRANSFAC - 102985814 102985826 2.0E-06 TCATTTTTCCTTA 13 V_CDX2_01_M01449 TRANSFAC - 102982228 102982243 1.0E-06 CAGGGCAATAAACTTC 16 V_EVI1_01_M00078 TRANSFAC - 102985235 102985250 6.0E-06 AGAGGAGACAAGAGCC 16 V_MAZ_Q6_01_M02023 TRANSFAC - 102984403 102984416 3.0E-06 GGGGGAGGGGAGAA 14 V_CDX2_Q5_M00729 TRANSFAC + 102982227 102982240 2.0E-06 AGAAGTTTATTGCC 14 V_ISRE_01_M00258 TRANSFAC - 102986571 102986585 7.0E-06 CAGTTGCAATTTTCC 15 V_ELF5_01_M01197 TRANSFAC - 102985726 102985736 1.0E-05 TTGAGGAAATA 11 V_ELF5_01_M01197 TRANSFAC + 102985813 102985823 8.0E-06 ATAAGGAAAAA 11 V_CUX1_04_M02959 TRANSFAC + 102985805 102985819 2.0E-06 TAATGATAATAAGGA 15 V_CUX1_04_M02959 TRANSFAC - 102985805 102985819 8.0E-06 TCCTTATTATCATTA 15 V_CDX1_01_M01373 TRANSFAC - 102982228 102982243 7.0E-06 CAGGGCAATAAACTTC 16 V_CREBATF_Q6_M00981 TRANSFAC + 102985799 102985807 9.0E-06 ATGACGTAA 9 V_IRF3_06_M02871 TRANSFAC - 102986348 102986361 5.0E-06 GGAAAAGGGTGCGA 14 V_OCT1_04_M00138 TRANSFAC - 102986314 102986336 7.0E-06 ACATGATGATGCATATACTCCAT 23 V_OCT1_04_M00138 TRANSFAC + 102986468 102986490 5.0E-06 ATTTTGTCATGAAAAAACTACCA 23 Tal1_Gata1_MA0140.1 JASPAR + 102986583 102986600 3.0E-06 CTGTGCCCTGCTGATAAG 18 V_SPIB_01_M01204 TRANSFAC + 102986200 102986216 7.0E-06 AACAACAGGAAGCAACA 17 V_TEL2_Q6_M00678 TRANSFAC + 102985258 102985267 4.0E-06 TCACTTCCTG 10 V_BBX_04_M02843 TRANSFAC + 102985695 102985711 3.0E-06 CATTTGTTAAAAGATGC 17 V_AP1_C_M00199 TRANSFAC - 102988097 102988105 6.0E-06 ATGACTCAG 9 V_HOXA5_03_M02271 TRANSFAC - 102985685 102985692 7.0E-06 CACTAATT 8 V_TAXCREB_02_M00115 TRANSFAC - 102986317 102986331 7.0E-06 ATGATGCATATACTC 15 V_CETS1P54_01_M00032 TRANSFAC - 102985259 102985268 9.0E-06 ACAGGAAGTG 10 V_STAT4_Q5_M02117 TRANSFAC - 102985133 102985142 2.0E-06 TTAAAGGAAA 10 V_GATA5_04_M02860 TRANSFAC + 102986456 102986472 4.0E-06 ATGAAAGATATTATTTT 17 V_CTCF_02_M01259 TRANSFAC - 102982151 102982170 4.0E-06 ATGCAGGCAGAAGGGGGCAC 20 V_IK3_01_M00088 TRANSFAC - 102986188 102986200 4.0E-06 TACAGGGAATTCT 13 V_OCT4_02_M01124 TRANSFAC + 102986470 102986484 1.0E-06 TTTGTCATGAAAAAA 15 V_CTCF_01_M01200 TRANSFAC - 102982149 102982168 3.0E-06 GCAGGCAGAAGGGGGCACCA 20 V_ISGF4G_04_M02875 TRANSFAC - 102986356 102986369 3.0E-06 GCAAAACAGGAAAA 14 V_ISGF4G_04_M02875 TRANSFAC + 102986477 102986490 1.0E-05 TGAAAAAACTACCA 14 V_KAISO_01_M01119 TRANSFAC - 102985982 102985991 3.0E-06 ATCCTGCTAT 10 V_NEUROD_02_M01288 TRANSFAC + 102982182 102982193 4.0E-06 CTCCAGCTGTGC 12 V_NEUROD_02_M01288 TRANSFAC - 102986162 102986173 6.0E-06 CTCCTGCTGTTT 12 V_VBP_01_M00228 TRANSFAC - 102985799 102985808 5.0E-06 ATTACGTCAT 10 V_SP4_Q5_M01273 TRANSFAC + 102983699 102983709 5.0E-06 CCCCCGCCCCC 11 V_PTF1BETA_Q6_M00657 TRANSFAC + 102986570 102986583 4.0E-06 GGGAAAATTGCAAC 14 V_ELF1_Q6_M00746 TRANSFAC - 102984417 102984428 1.0E-06 GCAAGAGGAAAT 12 V_ELF1_Q6_M00746 TRANSFAC - 102986356 102986367 2.0E-06 AAAACAGGAAAA 12 V_AP1_Q4_01_M00926 TRANSFAC + 102988098 102988105 1.0E-05 TGAGTCAT 8 V_S8_01_M00099 TRANSFAC + 102985678 102985693 7.0E-06 TATAGGCAATTAGTGA 16 V_ZIC2_05_M02940 TRANSFAC + 102986160 102986174 5.0E-06 ACAAACAGCAGGAGA 15 V_HAND1E47_01_M00222 TRANSFAC + 102985873 102985888 5.0E-06 TCGGTCATCTGGAATT 16 V_GABPBETA_Q3_M01876 TRANSFAC - 102985258 102985268 1.0E-06 ACAGGAAGTGA 11 V_BARHL1_01_M01332 TRANSFAC + 102985678 102985693 6.0E-06 TATAGGCAATTAGTGA 16 V_FOXL1_02_M02857 TRANSFAC - 102986462 102986477 2.0E-06 ATGACAAAATAATATC 16 V_FOXL1_02_M02857 TRANSFAC - 102986651 102986666 9.0E-06 TTTACCAAACAATACC 16 V_ATF2_Q5_M01862 TRANSFAC + 102985797 102985808 1.0E-06 GCATGACGTAAT 12 V_GATA6_01_M00462 TRANSFAC + 102985806 102985815 6.0E-06 AATGATAATA 10 V_FRA1_Q5_M01267 TRANSFAC + 102988098 102988105 1.0E-05 TGAGTCAT 8 V_FPM315_01_M01587 TRANSFAC - 102983691 102983702 4.0E-06 GGGGGAGCAGGG 12 V_MYB_Q3_M00773 TRANSFAC - 102982052 102982062 2.0E-06 AGAGGCAGTTA 11 V_IRF6_04_M02874 TRANSFAC + 102985752 102985766 9.0E-06 ATCTCTCTCTGTCAA 15 V_BARX2_01_M01431 TRANSFAC - 102985678 102985693 4.0E-06 TCACTAATTGCCTATA 16 V_BARX2_01_M01431 TRANSFAC + 102985680 102985695 7.0E-06 TAGGCAATTAGTGAAC 16 V_RSRFC4_01_M00026 TRANSFAC - 102986493 102986508 8.0E-06 AATCCATTTTTAGCAG 16 V_ETS1_B_M00339 TRANSFAC - 102985254 102985268 0.0E+00 ACAGGAAGTGAGTTA 15 V_ZFP281_01_M01597 TRANSFAC - 102984407 102984417 1.0E-06 TGGGGGAGGGG 11 V_SREBP_Q3_M00776 TRANSFAC + 102986273 102986284 9.0E-06 AGCCTCACCCCA 12 V_SOX2_01_M02246 TRANSFAC + 102986468 102986482 5.0E-06 ATTTTGTCATGAAAA 15 V_EWSR1FLI1_01_M02252 TRANSFAC - 102985120 102985137 6.0E-06 GGAAACAAGGAGGGAGGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 102986115 102986132 2.0E-06 GGGAGAAAGGGAGGTAAA 18 V_HLF_01_M00260 TRANSFAC - 102985799 102985808 5.0E-06 ATTACGTCAT 10 V_PIT1_Q6_M00802 TRANSFAC - 102986445 102986462 7.0E-06 CTTTCATTCTGAAAAACA 18 V_SP1_Q2_01_M00933 TRANSFAC + 102983700 102983709 4.0E-06 CCCCGCCCCC 10 V_LHX4_01_M01421 TRANSFAC - 102985678 102985694 5.0E-06 TTCACTAATTGCCTATA 17 V_HOXA10_01_M01464 TRANSFAC - 102982227 102982242 8.0E-06 AGGGCAATAAACTTCT 16 V_LPOLYA_B_M00318 TRANSFAC - 102986400 102986407 7.0E-06 CAATAAAG 8 V_MAFK_04_M02880 TRANSFAC + 102986570 102986584 3.0E-06 GGGAAAATTGCAACT 15 V_BARX1_01_M01340 TRANSFAC + 102985680 102985695 3.0E-06 TAGGCAATTAGTGAAC 16 V_HOXD10_01_M01375 TRANSFAC - 102982226 102982242 8.0E-06 AGGGCAATAAACTTCTA 17 V_TCF11MAFG_01_M00284 TRANSFAC + 102985818 102985839 0.0E+00 GAAAAATGAGAAAGCAGTTTTT 22 V_OBOX6_02_M03068 TRANSFAC + 102986498 102986512 6.0E-06 AAAAATGGATTAAGC 15 V_TCF3_05_M02920 TRANSFAC - 102985833 102985847 3.0E-06 AAGGGAATAAAAACT 15 V_ZIC1_05_M02939 TRANSFAC + 102986160 102986174 5.0E-06 ACAAACAGCAGGAGA 15 V_OCT4_01_M01125 TRANSFAC + 102986469 102986483 1.0E-06 TTTTGTCATGAAAAA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.