Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RNASE13 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 440163 ribonuclease, RNase A family, 13 (non-active) chr14 - 21502444 - 21507944 21502944 Transcription Factor Binding Sites   Download all TFBS in the RNASE13 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints MYF6_bHLH_full_dimeric_10_1 SELEX + 21507363 21507372 9.0E-06 AGCAGCTGTT 10 IRF7_IRF_DBD_dimeric_14_1 SELEX - 21507109 21507122 4.0E-06 GAGAAAGTGAAACA 14 RARA_nuclearreceptor_full_dimeric_18_1 SELEX + 21507049 21507066 2.0E-06 AAAGGTCATGGGAATTCA 18 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX + 21507048 21507060 5.0E-06 GAAAGGTCATGGG 13 IRF8_IRF_full_dimeric_14_1 SELEX - 21507109 21507122 6.0E-06 GAGAAAGTGAAACA 14 RARG_nuclearreceptor_full_dimeric_17_1 SELEX + 21507050 21507066 2.0E-06 AAGGTCATGGGAATTCA 17 EWSR1-FLI1_MA0149.1 JASPAR - 21507310 21507327 1.0E-06 GGAAGGGAGAGAGGAGGG 18 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX + 21507049 21507066 3.0E-06 AAAGGTCATGGGAATTCA 18 STAT1_MA0137.2 JASPAR - 21507039 21507053 4.0E-06 CCTTTCCTGGAACAG 15 Pax4_MA0068.1 JASPAR + 21500571 21500600 7.0E-06 TACTGATATCCACCTCTCCACCCCCACCCC 30 IRF1_MA0050.1 JASPAR - 21507109 21507120 2.0E-06 GAAAGTGAAACA 12 EOMES_TBX_DBD_monomeric_13_1 SELEX - 21500559 21500571 3.0E-06 AATGTGTGAACAC 13 POU6F2_POU_DBD_dimeric_16_1 SELEX - 21507131 21507146 8.0E-06 GTAATGGGCTCATTTT 16 RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX + 21507050 21507066 4.0E-06 AAGGTCATGGGAATTCA 17 SREBF2_bHLH_DBD_dimeric_10_1 SELEX + 21500621 21500630 7.0E-06 CTCACGTGAT 10 TBR1_TBX_full_monomeric_11_1 SELEX - 21500561 21500571 9.0E-06 AATGTGTGAAC 11 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 21507363 21507372 3.0E-06 AGCAGCTGTT 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 21507363 21507372 1.0E-06 AACAGCTGCT 10 Tcf21_bHLH_DBD_dimeric_14_1 SELEX - 21507361 21507374 2.0E-06 ACAACAGCTGCTGC 14 Srebf1_bHLH_DBD_dimeric_10_1 SELEX + 21500621 21500630 7.0E-06 CTCACGTGAT 10 Srebf1_bHLH_DBD_dimeric_10_1 SELEX - 21500621 21500630 9.0E-06 ATCACGTGAG 10 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX + 21507050 21507066 2.0E-06 AAGGTCATGGGAATTCA 17 TBX21_TBX_full_monomeric_10_1 SELEX - 21500562 21500571 4.0E-06 AATGTGTGAA 10 Stat3_MA0144.1 JASPAR + 21507042 21507051 1.0E-06 TTCCAGGAAA 10 TFAP4_bHLH_full_dimeric_10_1 SELEX + 21507034 21507043 9.0E-06 CACAGCTGTT 10 Myf_MA0055.1 JASPAR + 21507359 21507370 1.0E-06 AAGCAGCAGCTG 12 Myf_MA0055.1 JASPAR - 21507362 21507373 2.0E-06 CAACAGCTGCTG 12 TFEC_bHLH_DBD_dimeric_10_1 SELEX - 21500621 21500630 4.0E-06 ATCACGTGAG 10 NR3C1_MA0113.1 JASPAR - 21507536 21507553 6.0E-06 GGGAAGAAAAAGTCCCTT 18 FOXO6_forkhead_DBD_putatively-multimeric_14_1 SELEX - 21507373 21507386 2.0E-06 CTTCCCCACAGGAC 14 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX - 21507375 21507386 6.0E-06 CTTCCCCACAGG 12 MSC_bHLH_full_dimeric_10_1 SELEX - 21507034 21507043 9.0E-06 AACAGCTGTG 10 MSC_bHLH_full_dimeric_10_1 SELEX - 21507363 21507372 4.0E-06 AACAGCTGCT 10 RREB1_MA0073.1 JASPAR + 21507433 21507452 9.0E-06 CCCCAACTTAAACACACACA 20 V_MEQ_01_M02049 TRANSFAC + 21507443 21507451 7.0E-06 AACACACAC 9 V_FOXP1_01_M00987 TRANSFAC - 21507436 21507455 9.0E-06 TTGTGTGTGTGTTTAAGTTG 20 V_E2A_Q6_01_M02088 TRANSFAC - 21507361 21507373 1.0E-05 CAACAGCTGCTGC 13 V_LEF1_04_M02774 TRANSFAC - 21507150 21507166 4.0E-06 TGGTCCTTTGATAAATA 17 V_CDX2_Q5_01_M01659 TRANSFAC - 21507149 21507159 1.0E-05 TTGATAAATAA 11 V_NRSF_Q4_M01028 TRANSFAC - 21507342 21507360 3.0E-06 TTCCTCTCGCCTGTGCTGG 19 V_HOXA3_01_M00395 TRANSFAC - 21507169 21507177 7.0E-06 CCTAATTTT 9 V_TCF4_Q5_01_M02033 TRANSFAC + 21507155 21507164 1.0E-06 ATCAAAGGAC 10 V_SATB1_Q3_M01723 TRANSFAC - 21507141 21507156 8.0E-06 ATAAATAAAGGTAATG 16 V_NR2F2_03_M02783 TRANSFAC + 21507045 21507060 6.0E-06 CAGGAAAGGTCATGGG 16 V_TBR2_01_M01774 TRANSFAC - 21500562 21500570 8.0E-06 ATGTGTGAA 9 V_IRF_Q6_01_M00972 TRANSFAC - 21507110 21507120 1.0E-06 GAAAGTGAAAC 11 V_ZFP740_03_M02834 TRANSFAC + 21500585 21500600 6.0E-06 TCTCCACCCCCACCCC 16 V_IRF2_Q6_M01882 TRANSFAC - 21507107 21507122 0.0E+00 GAGAAAGTGAAACATA 16 V_AP4_Q6_M00176 TRANSFAC + 21507034 21507043 8.0E-06 CACAGCTGTT 10 V_POU3F2_02_M00464 TRANSFAC - 21507172 21507181 1.0E-05 TTATCCTAAT 10 V_HOXA2_01_M01402 TRANSFAC - 21507134 21507149 6.0E-06 AAGGTAATGGGCTCAT 16 V_AP4_Q6_01_M00927 TRANSFAC - 21507364 21507372 1.0E-05 AACAGCTGC 9 V_NR3C1_01_M02219 TRANSFAC - 21507536 21507553 6.0E-06 GGGAAGAAAAAGTCCCTT 18 V_ZNF219_01_M01122 TRANSFAC + 21500589 21500600 8.0E-06 CACCCCCACCCC 12 V_HELIOSA_02_M01004 TRANSFAC + 21507172 21507182 1.0E-05 ATTAGGATAAC 11 V_TCF3_04_M02816 TRANSFAC + 21507150 21507166 1.0E-06 TATTTATCAAAGGACCA 17 V_POU3F2_01_M00463 TRANSFAC + 21507143 21507156 7.0E-06 TTACCTTTATTTAT 14 V_MYF_01_M01302 TRANSFAC + 21507359 21507370 1.0E-06 AAGCAGCAGCTG 12 V_MYF_01_M01302 TRANSFAC - 21507362 21507373 2.0E-06 CAACAGCTGCTG 12 V_SREBP1_01_M00220 TRANSFAC - 21500621 21500631 2.0E-06 CATCACGTGAG 11 V_KROX_Q6_M00982 TRANSFAC + 21500587 21500600 7.0E-06 TCCACCCCCACCCC 14 V_NFKB_Q6_M00194 TRANSFAC - 21507074 21507087 9.0E-06 GTGGGACTTTCTTC 14 V_E47_02_M00071 TRANSFAC + 21507031 21507046 9.0E-06 ACCCACAGCTGTTCCA 16 V_IRF_Q6_M00772 TRANSFAC + 21507106 21507120 2.0E-06 GTATGTTTCACTTTC 15 V_ZBTB7B_03_M02826 TRANSFAC + 21503853 21503867 3.0E-06 AGAGCCCCCTAAACT 15 V_ASCL2_03_M02737 TRANSFAC - 21507359 21507375 0.0E+00 GACAACAGCTGCTGCTT 17 V_ISRE_01_M00258 TRANSFAC + 21507108 21507122 9.0E-06 ATGTTTCACTTTCTC 15 V_HOX13_01_M00023 TRANSFAC + 21500556 21500585 9.0E-06 CTTGTGTTCACACATTACTGATATCCACCT 30 V_AP4_Q5_M00175 TRANSFAC + 21507034 21507043 8.0E-06 CACAGCTGTT 10 V_TCF7_03_M02817 TRANSFAC + 21507150 21507166 2.0E-06 TATTTATCAAAGGACCA 17 V_STAT4_Q5_M02117 TRANSFAC + 21507042 21507051 7.0E-06 TTCCAGGAAA 10 V_ISGF4G_04_M02875 TRANSFAC + 21507176 21507189 5.0E-06 GGATAACAGAACTT 14 V_IRF7_01_M00453 TRANSFAC - 21507106 21507123 4.0E-06 TGAGAAAGTGAAACATAC 18 V_BCL6B_04_M02844 TRANSFAC + 21500590 21500605 1.0E-06 ACCCCCACCCCTCAAA 16 V_TAL1_01_M01591 TRANSFAC - 21507501 21507513 2.0E-06 CTTCCTTCTCATT 13 V_TAL1_01_M01591 TRANSFAC + 21507556 21507568 5.0E-06 CTGTCTTCTCTCC 13 V_STRA13_01_M00985 TRANSFAC + 21500619 21500632 5.0E-06 TCCTCACGTGATGG 14 V_STRA13_01_M00985 TRANSFAC - 21500619 21500632 3.0E-06 CCATCACGTGAGGA 14 V_FOXL1_04_M02753 TRANSFAC - 21507145 21507161 5.0E-06 CTTTGATAAATAAAGGT 17 V_NANOG_01_M01123 TRANSFAC + 21507136 21507147 8.0E-06 GAGCCCATTACC 12 V_IRF1_Q6_01_M01881 TRANSFAC + 21507108 21507121 1.0E-06 ATGTTTCACTTTCT 14 V_RARA_03_M02787 TRANSFAC + 21507045 21507060 9.0E-06 CAGGAAAGGTCATGGG 16 V_EWSR1FLI1_01_M02252 TRANSFAC - 21507310 21507327 1.0E-06 GGAAGGGAGAGAGGAGGG 18 V_UF1H3BETA_Q6_M01068 TRANSFAC - 21500585 21500598 7.0E-06 GGTGGGGGTGGAGA 14 V_STAT1_Q6_M01823 TRANSFAC + 21507042 21507051 2.0E-06 TTCCAGGAAA 10 V_DEC_Q1_M00997 TRANSFAC + 21500620 21500632 8.0E-06 CCTCACGTGATGG 13 V_BRCA_01_M01082 TRANSFAC - 21507477 21507484 1.0E-05 TTCTGTTG 8 V_STAT1_05_M01260 TRANSFAC + 21507039 21507060 6.0E-06 CTGTTCCAGGAAAGGTCATGGG 22 V_PAX4_04_M00380 TRANSFAC + 21500565 21500594 7.0E-06 ACACATTACTGATATCCACCTCTCCACCCC 30 V_HOXB5_01_M01319 TRANSFAC - 21507134 21507149 8.0E-06 AAGGTAATGGGCTCAT 16 V_PPARA_01_M00242 TRANSFAC - 21507183 21507202 6.0E-06 CAAAAGCAGATCCAAGTTCT 20 V_T3RALPHA_Q6_M01724 TRANSFAC - 21507090 21507100 0.0E+00 GTTGAGGTCAG 11 V_IPF1_06_M01438 TRANSFAC - 21507134 21507149 8.0E-06 AAGGTAATGGGCTCAT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.