Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MIPEP Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 4285 mitochondrial intermediate peptidase chr13 - 24463087 - 24468587 24463587 Transcription Factor Binding Sites   Download all TFBS in the MIPEP promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX - 24463778 24463793 8.0E-06 AAGAATATCTAATGTC 16 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 24462804 24462821 5.0E-06 TTAATGAAATTACCATTA 18 SPIC_ETS_full_monomeric_14_1 SELEX + 24468051 24468064 9.0E-06 TACAAGGGGAAGTT 14 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 24462805 24462821 5.0E-06 TAATGAAATTACCATTA 17 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 24468175 24468191 4.0E-06 CCTTTATTATAAGATTA 17 Arx_homeodomain_DBD_dimeric_13_1 SELEX + 24462804 24462816 1.0E-06 TTAATGAAATTAC 13 Arx_homeodomain_DBD_dimeric_13_1 SELEX - 24462804 24462816 2.0E-06 GTAATTTCATTAA 13 POU5F1P1_POU_DBD_monomeric_9_1 SELEX + 24464201 24464209 9.0E-06 TATTTAAAT 9 POU1F1_POU_DBD_monomeric_14_1 SELEX + 24464199 24464212 7.0E-06 CTTATTTAAATGAT 14 Alx1_homeodomain_DBD_dimeric_13_1 SELEX + 24462804 24462816 1.0E-06 TTAATGAAATTAC 13 Alx1_homeodomain_DBD_dimeric_13_1 SELEX - 24462804 24462816 1.0E-06 GTAATTTCATTAA 13 ISX_homeodomain_DBD_dimeric_13_1 SELEX - 24462804 24462816 5.0E-06 GTAATTTCATTAA 13 OTX2_homeodomain_DBD_dimeric_15_1 SELEX - 24468179 24468193 1.0E-05 TATAATCTTATAATA 15 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX - 24463300 24463311 2.0E-06 AGCCCCAGGGCA 12 PROP1_homeodomain_full_dimeric_11_1 SELEX + 24462805 24462815 1.0E-06 TAATGAAATTA 11 PROP1_homeodomain_full_dimeric_11_1 SELEX - 24462805 24462815 1.0E-06 TAATTTCATTA 11 ONECUT1_CUT_full_monomeric_14_1 SELEX + 24464298 24464311 4.0E-06 AGGAAATCAATTTT 14 ALX3_homeodomain_full_dimeric_13_1 SELEX + 24462804 24462816 1.0E-06 TTAATGAAATTAC 13 ALX3_homeodomain_full_dimeric_13_1 SELEX - 24462804 24462816 1.0E-06 GTAATTTCATTAA 13 PAX3_PAX_DBD_dimeric_10_1 SELEX + 24464301 24464310 6.0E-06 AAATCAATTT 10 PAX3_PAX_DBD_dimeric_10_1 SELEX - 24464301 24464310 6.0E-06 AAATTGATTT 10 ONECUT2_CUT_DBD_monomeric_14_1 SELEX + 24464298 24464311 5.0E-06 AGGAAATCAATTTT 14 Tcf21_bHLH_DBD_dimeric_14_1 SELEX - 24463337 24463350 9.0E-06 GCACCAGCTGGTCT 14 DRGX_homeodomain_DBD_dimeric_13_1 SELEX + 24462804 24462816 1.0E-06 TTAATGAAATTAC 13 DRGX_homeodomain_DBD_dimeric_13_1 SELEX - 24462804 24462816 1.0E-06 GTAATTTCATTAA 13 PHOX2B_homeodomain_full_dimeric_11_1 SELEX + 24462805 24462815 1.0E-06 TAATGAAATTA 11 PHOX2B_homeodomain_full_dimeric_11_1 SELEX - 24462805 24462815 3.0E-06 TAATTTCATTA 11 Alx4_homeodomain_DBD_dimeric_13_1 SELEX + 24462804 24462816 1.0E-06 TTAATGAAATTAC 13 Alx4_homeodomain_DBD_dimeric_13_1 SELEX - 24462804 24462816 1.0E-06 GTAATTTCATTAA 13 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 24462804 24462821 6.0E-06 TTAATGAAATTACCATTA 18 VENTX_homeodomain_DBD_dimeric_21_1 SELEX + 24462802 24462822 1.0E-06 TATTAATGAAATTACCATTAC 21 PRRX1_homeodomain_full_dimeric_11_1 SELEX + 24462805 24462815 7.0E-06 TAATGAAATTA 11 PRRX1_homeodomain_full_dimeric_11_1 SELEX - 24462805 24462815 3.0E-06 TAATTTCATTA 11 CART1_homeodomain_DBD_dimeric_13_1 SELEX + 24462804 24462816 4.0E-06 TTAATGAAATTAC 13 CART1_homeodomain_DBD_dimeric_13_1 SELEX - 24462804 24462816 3.0E-06 GTAATTTCATTAA 13 POU3F1_POU_DBD_monomeric_12_1 SELEX - 24462810 24462821 9.0E-06 TAATGGTAATTT 12 POU3F1_POU_DBD_monomeric_12_1 SELEX + 24464200 24464211 4.0E-06 TTATTTAAATGA 12 Uncx_homeodomain_DBD_dimeric_13_1 SELEX + 24462804 24462816 5.0E-06 TTAATGAAATTAC 13 Uncx_homeodomain_DBD_dimeric_13_1 SELEX - 24462804 24462816 1.0E-06 GTAATTTCATTAA 13 Evi1_MA0029.1 JASPAR + 24468180 24468193 3.0E-06 ATTATAAGATTATA 14 TFAP2C_TFAP_full_dimeric_12_1 SELEX - 24463300 24463311 1.0E-06 AGCCCCAGGGCA 12 PHOX2A_homeodomain_DBD_dimeric_11_1 SELEX + 24462805 24462815 2.0E-06 TAATGAAATTA 11 PHOX2A_homeodomain_DBD_dimeric_11_1 SELEX - 24462805 24462815 2.0E-06 TAATTTCATTA 11 SPI1_ETS_full_monomeric_14_1 SELEX + 24468051 24468064 9.0E-06 TACAAGGGGAAGTT 14 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX - 24463300 24463311 8.0E-06 AGCCCCAGGGCA 12 POU3F2_POU_DBD_monomeric_12_1 SELEX + 24464200 24464211 7.0E-06 TTATTTAAATGA 12 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 24462804 24462821 5.0E-06 TTAATGAAATTACCATTA 18 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX + 24463300 24463311 9.0E-06 TGCCCTGGGGCT 12 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX - 24463300 24463311 9.0E-06 AGCCCCAGGGCA 12 PAX7_PAX_full_dimeric_10_1 SELEX + 24464301 24464310 7.0E-06 AAATCAATTT 10 PAX7_PAX_full_dimeric_10_1 SELEX - 24464301 24464310 1.0E-05 AAATTGATTT 10 ONECUT3_CUT_DBD_monomeric_14_1 SELEX + 24464298 24464311 6.0E-06 AGGAAATCAATTTT 14 V_OBOX6_01_M01445 TRANSFAC + 24464109 24464123 2.0E-06 AGAAGTGGATTAACT 15 V_SPI1_01_M01203 TRANSFAC + 24468051 24468067 6.0E-06 TACAAGGGGAAGTTGAG 17 V_DBX1_01_M01483 TRANSFAC - 24468178 24468194 8.0E-06 TTATAATCTTATAATAA 17 V_FXR_Q3_M00631 TRANSFAC + 24464110 24464123 2.0E-06 GAAGTGGATTAACT 14 V_SOX40_04_M02908 TRANSFAC - 24468176 24468191 0.0E+00 TAATCTTATAATAAAG 16 V_SRY_07_M02813 TRANSFAC + 24468176 24468191 6.0E-06 CTTTATTATAAGATTA 16 V_SRY_07_M02813 TRANSFAC - 24468176 24468191 9.0E-06 TAATCTTATAATAAAG 16 TAL1_TCF3_MA0091.1 JASPAR + 24463337 24463348 4.0E-06 AGACCAGCTGGT 12 V_OBOX1_01_M01450 TRANSFAC + 24464109 24464125 4.0E-06 AGAAGTGGATTAACTCG 17 V_SATB1_Q3_M01723 TRANSFAC + 24462800 24462815 1.0E-06 GGTATTAATGAAATTA 16 V_PROP1_01_M01294 TRANSFAC + 24462805 24462815 4.0E-06 TAATGAAATTA 11 V_PROP1_01_M01294 TRANSFAC - 24462805 24462815 1.0E-06 TAATTTCATTA 11 V_EGR_Q6_M00807 TRANSFAC + 24463738 24463748 8.0E-06 GTGGGCGCGAG 11 V_ISL2_01_M01328 TRANSFAC - 24462801 24462816 9.0E-06 GTAATTTCATTAATAC 16 V_NKX24_01_M01350 TRANSFAC - 24464105 24464120 9.0E-06 TAATCCACTTCTAAAA 16 V_PU1_Q4_M01172 TRANSFAC - 24468052 24468070 9.0E-06 CTACTCAACTTCCCCTTGT 19 V_LYF1_01_M00141 TRANSFAC - 24464344 24464352 3.0E-06 TTTGGGAGA 9 V_SOX21_03_M02803 TRANSFAC - 24468176 24468191 6.0E-06 TAATCTTATAATAAAG 16 V_IPF1_Q4_M00436 TRANSFAC + 24462801 24462812 3.0E-06 GTATTAATGAAA 12 V_LMX1_01_M01409 TRANSFAC + 24462800 24462816 9.0E-06 GGTATTAATGAAATTAC 17 V_FKLF_Q5_M01837 TRANSFAC + 24463735 24463744 5.0E-06 GGGGTGGGCG 10 V_PAX9_B_M00329 TRANSFAC - 24464121 24464144 9.0E-06 GTGATCCTGTGAAGCGAGACGAGT 24 V_SP4_03_M02810 TRANSFAC + 24463671 24463687 8.0E-06 TTTACCGCCCCCTGTGT 17 V_HOXB6_01_M01460 TRANSFAC - 24462806 24462821 7.0E-06 TAATGGTAATTTCATT 16 V_CDX2_Q5_M00729 TRANSFAC - 24468179 24468192 5.0E-06 ATAATCTTATAATA 14 V_OBOX2_01_M01364 TRANSFAC + 24464109 24464125 5.0E-06 AGAAGTGGATTAACTCG 17 V_MATH1_Q2_M01716 TRANSFAC + 24463340 24463349 3.0E-06 CCAGCTGGTG 10 V_SFPI1_04_M02896 TRANSFAC + 24464305 24464318 0.0E+00 CAATTTTGGGAACC 14 V_GADP_01_M01258 TRANSFAC + 24463575 24463586 8.0E-06 CGCTTCCGGGTC 12 V_OCT1_08_M01354 TRANSFAC + 24462799 24462814 9.0E-06 AGGTATTAATGAAATT 16 V_ERR1_Q3_M01841 TRANSFAC + 24463309 24463323 3.0E-06 GCTTGACATTGAAGG 15 V_MEF2_04_M00233 TRANSFAC + 24464340 24464361 2.0E-06 TGTGTCTCCCAAAATAGATGCT 22 V_IRF7_01_M00453 TRANSFAC - 24463758 24463775 3.0E-06 CTGGAATTCGAATATGTC 18 V_OBOX2_02_M03064 TRANSFAC + 24464109 24464125 5.0E-06 AGAAGTGGATTAACTCG 17 V_CNOT3_01_M01253 TRANSFAC - 24463588 24463597 8.0E-06 GGCCGCGCCC 10 V_TCF7_04_M02921 TRANSFAC + 24468176 24468190 9.0E-06 CTTTATTATAAGATT 15 V_LMX1B_01_M01363 TRANSFAC + 24462799 24462815 9.0E-06 AGGTATTAATGAAATTA 17 V_LMX1B_01_M01363 TRANSFAC - 24462800 24462816 5.0E-06 GTAATTTCATTAATACC 17 V_TCFAP2B_03_M02820 TRANSFAC - 24463299 24463312 7.0E-06 AAGCCCCAGGGCAG 14 V_STAT6_02_M00500 TRANSFAC - 24464298 24464305 1.0E-05 GATTTCCT 8 V_ETS1_B_M00339 TRANSFAC - 24463472 24463486 1.0E-05 GGAGGAAGGGACTGC 15 V_BBX_03_M02739 TRANSFAC + 24464201 24464215 1.0E-06 TATTTAAATGATGTA 15 V_BBX_03_M02739 TRANSFAC - 24464201 24464215 1.0E-05 TACATCATTTAAATA 15 V_OCT1_06_M00162 TRANSFAC + 24463752 24463765 1.0E-05 AATCATGACATATT 14 V_OCT1_07_M00248 TRANSFAC - 24462811 24462822 4.0E-06 GTAATGGTAATT 12 V_HIF2A_01_M01249 TRANSFAC + 24458945 24458954 6.0E-06 GTACGTGCTC 10 V_HOXD8_01_M01432 TRANSFAC - 24462798 24462814 9.0E-06 AATTTCATTAATACCTG 17 V_SOX15_04_M02903 TRANSFAC + 24462803 24462817 7.0E-06 ATTAATGAAATTACC 15 V_LHX5_01_M01353 TRANSFAC + 24462800 24462816 4.0E-06 GGTATTAATGAAATTAC 17 V_BRN3C_01_M01408 TRANSFAC + 24462799 24462814 0.0E+00 AGGTATTAATGAAATT 16 V_OBOX6_02_M03068 TRANSFAC + 24464109 24464123 2.0E-06 AGAAGTGGATTAACT 15 V_OBOX3_02_M03065 TRANSFAC + 24464109 24464125 4.0E-06 AGAAGTGGATTAACTCG 17 V_COUP_DR1_Q6_M00765 TRANSFAC + 24464335 24464347 9.0E-06 TGAACTGTGTCTC 13 V_SEF1_C_M00214 TRANSFAC - 24462825 24462843 2.0E-06 GACACGGCTGCCTGCAGTC 19 V_OBOX3_01_M01466 TRANSFAC + 24464109 24464125 4.0E-06 AGAAGTGGATTAACTCG 17 V_PAX6_01_M00097 TRANSFAC - 24464225 24464245 5.0E-06 ACACTTTCCGCATCAACTCCT 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.