Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MATN2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 4147 matrilin 2 chr8 + 98876310 - 98881810 98881310 Transcription Factor Binding Sites   Download all TFBS in the MATN2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NEUROD2_bHLH_full_dimeric_10_1 SELEX + 98883363 98883372 7.0E-06 GCCATATGTC 10 LHX6_homeodomain_full_dimeric_16_1 SELEX + 98884054 98884069 0.0E+00 TAATTGGTGTTAATGA 16 LHX6_homeodomain_full_dimeric_16_1 SELEX - 98884054 98884069 3.0E-06 TCATTAACACCAATTA 16 PDX1_homeodomain_DBD_dimeric_18_1 SELEX + 98884053 98884070 2.0E-06 GTAATTGGTGTTAATGAC 18 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 98884053 98884070 0.0E+00 GTCATTAACACCAATTAC 18 Tp73_p53l_DBD_dimeric_18_1 SELEX + 98878119 98878136 3.0E-06 TACATGTCTCCTCATGCA 18 Tp73_p53l_DBD_dimeric_18_1 SELEX - 98878119 98878136 1.0E-05 TGCATGAGGAGACATGTA 18 SCRT2_C2H2_DBD_monomeric_13_1 SELEX - 98881858 98881870 9.0E-06 GCTCAACAGGTCT 13 ZNF524_C2H2_full_dimeric_12_1 SELEX + 98883966 98883977 2.0E-06 ATCCTTGAACCC 12 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 98884054 98884069 1.0E-06 TAATTGGTGTTAATGA 16 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 98884054 98884069 1.0E-06 TAATTGGTGTTAATGA 16 RFX2_RFX_DBD_dimeric_15_1 SELEX + 98883244 98883258 1.0E-06 TGTTCCCAGGCAACC 15 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX + 98884053 98884070 2.0E-06 GTAATTGGTGTTAATGAC 18 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX - 98884053 98884070 1.0E-06 GTCATTAACACCAATTAC 18 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 98883328 98883337 9.0E-06 AGCAGCTGTC 10 RFX3_RFX_DBD_dimeric_15_1 SELEX + 98883244 98883258 1.0E-06 TGTTCCCAGGCAACC 15 RFX4_RFX_DBD_dimeric_15_1 SELEX + 98883244 98883258 3.0E-06 TGTTCCCAGGCAACC 15 Atoh1_bHLH_DBD_dimeric_10_1 SELEX - 98883363 98883372 1.0E-05 GACATATGGC 10 FEV_MA0156.1 JASPAR - 98879708 98879715 1.0E-05 CAGGAAAT 8 ZNF282_C2H2_DBD_monomeric_17_1 SELEX + 98877941 98877957 1.0E-06 CATTCCCTTAACCCTGC 17 NEUROG2_bHLH_full_dimeric_10_1 SELEX + 98883363 98883372 7.0E-06 GCCATATGTC 10 NEUROG2_bHLH_full_dimeric_10_1 SELEX - 98883363 98883372 7.0E-06 GACATATGGC 10 Nobox_MA0125.1 JASPAR + 98884054 98884061 7.0E-06 TAATTGGT 8 V_HSF2_01_M00147 TRANSFAC + 98879667 98879676 5.0E-06 AGAATTTTCT 10 V_MEIS1_02_M01419 TRANSFAC + 98883327 98883342 1.0E-05 GAGCAGCTGTCATGCC 16 V_TCF3_01_M01594 TRANSFAC - 98879760 98879772 9.0E-06 TTTTTGTTATGTC 13 V_APOLYA_B_M00310 TRANSFAC - 98882255 98882269 2.0E-06 CTTAAAGGCCGATTT 15 V_OSF2_Q6_M00731 TRANSFAC - 98882040 98882047 1.0E-05 ACCACAAA 8 V_NRSF_Q4_M01028 TRANSFAC + 98880096 98880114 3.0E-06 GTGCTGCTGCCTCTGCTGG 19 V_HMGIY_Q3_M01010 TRANSFAC + 98878109 98878123 7.0E-06 ATTGCAATTTTACAT 15 V_MTF1_Q4_M00650 TRANSFAC - 98880137 98880150 7.0E-06 ACTGCGCCCGGCCC 14 V_EVI1_04_M00081 TRANSFAC + 98879759 98879773 5.0E-06 AGACATAACAAAAAA 15 V_BCL6_01_M01183 TRANSFAC - 98879758 98879773 3.0E-06 TTTTTTGTTATGTCTT 16 V_ETS_B_M00340 TRANSFAC - 98877997 98878010 7.0E-06 GAGAGGAAACATCT 14 V_RELBP52_01_M01239 TRANSFAC + 98879639 98879648 6.0E-06 GGGGATTTTC 10 V_FOXJ1_04_M02854 TRANSFAC + 98879758 98879772 7.0E-06 AAGACATAACAAAAA 15 V_FOXJ1_04_M02854 TRANSFAC + 98879761 98879775 5.0E-06 ACATAACAAAAAAAC 15 V_SRY_02_M00160 TRANSFAC + 98879762 98879773 6.0E-06 CATAACAAAAAA 12 V_P50P50_Q3_M01223 TRANSFAC + 98879638 98879650 7.0E-06 AGGGGATTTTCAC 13 V_AP2_Q6_01_M00915 TRANSFAC + 98881625 98881637 3.0E-06 CCCTCCCCAGGCC 13 V_NKX24_01_M01350 TRANSFAC + 98882244 98882259 1.0E-05 AAGCACACTTAAAATC 16 V_LYF1_01_M00141 TRANSFAC - 98879751 98879759 9.0E-06 TTTGGGAGG 9 V_DLX5_01_M01388 TRANSFAC + 98884050 98884065 8.0E-06 CCAGTAATTGGTGTTA 16 V_TAL1_GATA1_01_M02243 TRANSFAC - 98883350 98883367 7.0E-06 ATGGCACTCGCTGATAAG 18 V_TGIF2_01_M01407 TRANSFAC + 98883327 98883342 9.0E-06 GAGCAGCTGTCATGCC 16 V_ETS_Q4_M00771 TRANSFAC + 98879704 98879715 9.0E-06 AAACATTTCCTG 12 V_SOX7_03_M02807 TRANSFAC + 98879758 98879779 2.0E-06 AAGACATAACAAAAAAACTATT 22 V_FOXA2_02_M02853 TRANSFAC + 98879759 98879773 5.0E-06 AGACATAACAAAAAA 15 V_IPF1_Q4_M00436 TRANSFAC + 98884060 98884071 3.0E-06 GTGTTAATGACT 12 V_POLY_C_M00212 TRANSFAC - 98878137 98878154 8.0E-06 AAATAAAGCTCTACTGAA 18 V_RFX1_01_M00280 TRANSFAC - 98883243 98883259 1.0E-06 GGGTTGCCTGGGAACAA 17 V_HSF1_01_M00146 TRANSFAC + 98879667 98879676 7.0E-06 AGAATTTTCT 10 V_HOXA3_07_M02869 TRANSFAC - 98878043 98878056 1.0E-05 GTAAACTATTAGAG 14 V_HOXA3_07_M02869 TRANSFAC + 98879770 98879783 7.0E-06 AAAAACTATTTGTG 14 V_AP2BETA_Q3_M01858 TRANSFAC - 98881627 98881642 6.0E-06 GTGCGGGCCTGGGGAG 16 V_LHX2_01_M01325 TRANSFAC + 98880085 98880101 9.0E-06 GAAACTAGTTAGTGCTG 17 V_CDX1_01_M01373 TRANSFAC + 98883384 98883399 2.0E-06 AAAGGTAGTTAAAAGT 16 V_GR_01_M00955 TRANSFAC + 98881950 98881976 7.0E-06 GTGTCATCTGGATTTTGTTCTTGGGTC 27 Tal1_Gata1_MA0140.1 JASPAR - 98883350 98883367 7.0E-06 ATGGCACTCGCTGATAAG 18 V_RFX_Q6_M00975 TRANSFAC + 98884044 98884052 4.0E-06 CTGTTGCCA 9 V_SRF_Q5_02_M01007 TRANSFAC + 98883367 98883385 6.0E-06 TATGTCCTTGTTTAGCAAA 19 V_CTCF_02_M01259 TRANSFAC + 98884003 98884022 8.0E-06 ATACTGCCTGAAGGGGGCTC 20 V_IRX3_01_M01318 TRANSFAC - 98878114 98878130 3.0E-06 AGGAGACATGTAAAATT 17 V_CTCF_01_M01200 TRANSFAC + 98884005 98884024 9.0E-06 ACTGCCTGAAGGGGGCTCAG 20 V_IRX5_01_M01472 TRANSFAC - 98878114 98878130 1.0E-06 AGGAGACATGTAAAATT 17 V_TFIII_Q6_M00706 TRANSFAC + 98881699 98881707 6.0E-06 AGAGGGAGG 9 V_IRX3_02_M01485 TRANSFAC - 98878114 98878130 2.0E-06 AGGAGACATGTAAAATT 17 V_HOXB7_01_M01396 TRANSFAC + 98884050 98884065 1.0E-05 CCAGTAATTGGTGTTA 16 V_MYOD_Q6_02_M02100 TRANSFAC + 98883330 98883338 4.0E-06 CAGCTGTCA 9 V_MTF1_06_M02882 TRANSFAC + 98879761 98879774 0.0E+00 ACATAACAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC + 98879759 98879772 4.0E-06 AGACATAACAAAAA 14 V_IPF1_05_M01255 TRANSFAC - 98884060 98884071 9.0E-06 AGTCATTAACAC 12 V_FOXL1_02_M02857 TRANSFAC + 98879758 98879773 0.0E+00 AAGACATAACAAAAAA 16 V_LUN1_01_M00480 TRANSFAC + 98879626 98879642 1.0E-05 TCCCAAGTTCCTAGGGG 17 V_FOXJ3_06_M02855 TRANSFAC + 98879757 98879773 3.0E-06 AAAGACATAACAAAAAA 17 V_EBNA1_01_M01745 TRANSFAC + 98883995 98884010 3.0E-06 GACAGCCAATACTGCC 16 V_NCX_01_M00484 TRANSFAC + 98884051 98884060 1.0E-05 CAGTAATTGG 10 V_HNF4_Q6_01_M01031 TRANSFAC + 98883298 98883311 7.0E-06 AGAGCAGAGTCCAA 14 V_ZBTB4_04_M02929 TRANSFAC - 98884044 98884059 1.0E-06 CAATTACTGGCAACAG 16 V_ZFP206_01_M01742 TRANSFAC + 98881615 98881625 4.0E-06 CGCGCAGGCGC 11 V_ZFP161_04_M02933 TRANSFAC - 98881538 98881551 3.0E-06 GCCGCGCAGAGCCG 14 V_MSX1_01_M00394 TRANSFAC + 98884051 98884059 7.0E-06 CAGTAATTG 9 V_MTATA_B_M00320 TRANSFAC + 98883216 98883232 1.0E-06 TTCTATAAATCGGGGCT 17 V_BARX2_01_M01431 TRANSFAC + 98884050 98884065 3.0E-06 CCAGTAATTGGTGTTA 16 V_PLZF_02_M01075 TRANSFAC + 98880111 98880139 4.0E-06 CTGGTAGCTTGTTAAAACCTGAACTGGGG 29 V_T3RBETA_Q6_01_M02119 TRANSFAC - 98879734 98879750 6.0E-06 AGGTAGGTGGAGGTCAG 17 V_OCT1_06_M00162 TRANSFAC + 98878113 98878126 6.0E-06 CAATTTTACATGTC 14 V_OSR1_04_M02888 TRANSFAC - 98880107 98880122 8.0E-06 ACAAGCTACCAGCAGA 16 V_IRX2_01_M01405 TRANSFAC - 98878114 98878130 3.0E-06 AGGAGACATGTAAAATT 17 V_HB9_01_M01349 TRANSFAC + 98884050 98884065 7.0E-06 CCAGTAATTGGTGTTA 16 V_SRF_06_M02916 TRANSFAC + 98879761 98879777 5.0E-06 ACATAACAAAAAAACTA 17 V_SRF_06_M02916 TRANSFAC + 98879762 98879778 2.0E-06 CATAACAAAAAAACTAT 17 V_NKX11_01_M01334 TRANSFAC - 98884048 98884064 3.0E-06 AACACCAATTACTGGCA 17 V_VDR_Q3_M00444 TRANSFAC + 98881871 98881885 4.0E-06 GGGTATGCAGGGTGA 15 V_SOX2_Q6_M01272 TRANSFAC - 98879761 98879776 4.0E-06 AGTTTTTTTGTTATGT 16 V_GATA5_03_M02756 TRANSFAC - 98883345 98883361 5.0E-06 CTCGCTGATAAGAGCTT 17 V_MAFK_04_M02880 TRANSFAC - 98878108 98878122 2.0E-06 TGTAAAATTGCAATG 15 V_BARX1_01_M01340 TRANSFAC + 98884050 98884065 6.0E-06 CCAGTAATTGGTGTTA 16 V_TCF11MAFG_01_M00284 TRANSFAC + 98878099 98878120 3.0E-06 GTGAGATGACATTGCAATTTTA 22 V_IRXB3_01_M01377 TRANSFAC - 98878114 98878130 5.0E-06 AGGAGACATGTAAAATT 17 V_FEV_01_M02269 TRANSFAC - 98879708 98879715 1.0E-05 CAGGAAAT 8 V_GBX1_01_M01371 TRANSFAC + 98884048 98884064 2.0E-06 TGCCAGTAATTGGTGTT 17 V_SMAD1_01_M01590 TRANSFAC + 98879762 98879773 2.0E-06 CATAACAAAAAA 12 V_CEBPA_Q6_M01866 TRANSFAC + 98883374 98883386 4.0E-06 TTGTTTAGCAAAA 13 V_NANOG_02_M01247 TRANSFAC + 98879758 98879777 0.0E+00 AAGACATAACAAAAAAACTA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.