Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MATN1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 4146 matrilin 1, cartilage matrix protein chr1 - 31195932 - 31201432 31196432 Transcription Factor Binding Sites   Download all TFBS in the MATN1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 31200839 31200849 9.0E-06 AATGAGTCACT 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 31200839 31200849 7.0E-06 AGTGACTCATT 11 CTCF_MA0139.1 JASPAR + 31192237 31192255 0.0E+00 TGGCCACCAGATGGCAGCC 19 SP3_C2H2_DBD_monomeric_11_1 SELEX + 31192154 31192164 1.0E-05 GCCACGCCCCT 11 NFIA_NFI_full_dimeric_15_1 SELEX + 31195187 31195201 6.0E-06 CTGGCGGGTTGCCAA 15 NFIA_NFI_full_dimeric_15_1 SELEX - 31195187 31195201 1.0E-06 TTGGCAACCCGCCAG 15 FLI1_ETS_full_monomeric_10_1 SELEX - 31199826 31199835 7.0E-06 ACCGGAAGTC 10 ETV5_ETS_DBD_monomeric_10_1 SELEX - 31199826 31199835 7.0E-06 ACCGGAAGTC 10 ZNF713_C2H2_full_monomeric_17_1 SELEX + 31199132 31199148 2.0E-06 AAAAAAAAATGCACGAA 17 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 31192154 31192164 7.0E-06 GCCACGCCCCT 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 31195266 31195276 7.0E-06 GACACACCCCC 11 ERG_ETS_full_monomeric_10_1 SELEX - 31199826 31199835 5.0E-06 ACCGGAAGTC 10 ETV3_ETS_DBD_monomeric_10_1 SELEX - 31199826 31199835 3.0E-06 ACCGGAAGTC 10 KLF14_C2H2_DBD_monomeric_14_1 SELEX + 31192153 31192166 6.0E-06 TGCCACGCCCCTCG 14 FEV_ETS_DBD_monomeric_10_1 SELEX - 31199826 31199835 6.0E-06 ACCGGAAGTC 10 ZNF435_C2H2_full_dimeric_18_1 SELEX + 31200852 31200869 3.0E-06 CCTGTTTTCAGAGCCTCC 18 EWSR1-FLI1_MA0149.1 JASPAR - 31200743 31200760 0.0E+00 GGAGGGAGGGAAGGAGAG 18 EWSR1-FLI1_MA0149.1 JASPAR - 31200747 31200764 6.0E-06 AGAGGGAGGGAGGGAAGG 18 NFIX_NFI_full_dimeric_15_2 SELEX + 31195187 31195201 2.0E-06 CTGGCGGGTTGCCAA 15 NFIX_NFI_full_dimeric_15_2 SELEX - 31195187 31195201 9.0E-06 TTGGCAACCCGCCAG 15 ETV1_ETS_DBD_monomeric_10_1 SELEX - 31199826 31199835 7.0E-06 ACCGGAAGTC 10 KLF13_C2H2_full_monomeric_18_1 SELEX + 31192152 31192169 2.0E-06 GTGCCACGCCCCTCGTGC 18 Pax4_MA0068.1 JASPAR + 31192440 31192469 9.0E-06 GAAAGAATCTGCCTGCTCCCCTCCCACTAG 30 OTX2_homeodomain_DBD_dimeric_15_1 SELEX + 31197268 31197282 4.0E-06 GTTAATCCTCTTGAC 15 REL_MA0101.1 JASPAR + 31191988 31191997 6.0E-06 GGGGCTTTCC 10 OTX2_homeodomain_DBD_monomeric_8_1 SELEX + 31197269 31197276 7.0E-06 TTAATCCT 8 ETS1_ETS_full_monomeric_10_1 SELEX - 31199826 31199835 9.0E-06 ACCGGAAGTC 10 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX + 31200671 31200686 8.0E-06 TGGCATTTAAAGCTCT 16 ELK4_ETS_DBD_monomeric_10_1 SELEX - 31199826 31199835 5.0E-06 ACCGGAAGTC 10 ELK4_MA0076.1 JASPAR - 31199827 31199835 4.0E-06 ACCGGAAGT 9 Otx1_homeodomain_DBD_dimeric_15_1 SELEX + 31197268 31197282 8.0E-06 GTTAATCCTCTTGAC 15 TFCP2_CP2_full_dimeric_10_1 SELEX - 31195156 31195165 7.0E-06 AAACTGGTTC 10 TFCP2_CP2_full_dimer-of-dimers_16_1 SELEX + 31199113 31199128 8.0E-06 TCCGGTATGAGCCAGA 16 MYBL1_MYB_DBD_dimeric_17_1 SELEX + 31199242 31199258 9.0E-06 GAAACTTAAAGCCGTTA 17 GMEB2_SAND_DBD_dimer-of-dimers_15_1 SELEX + 31191637 31191651 3.0E-06 CACGTAATCGACGTG 15 PITX1_homeodomain_full_monomeric_9_1 SELEX + 31197268 31197276 9.0E-06 GTTAATCCT 9 ERF_ETS_DBD_monomeric_10_1 SELEX - 31199826 31199835 5.0E-06 ACCGGAAGTC 10 ELK1_ETS_full_monomeric_10_1 SELEX - 31199826 31199835 4.0E-06 ACCGGAAGTC 10 NFIB_NFI_full_dimeric_15_1 SELEX + 31195187 31195201 7.0E-06 CTGGCGGGTTGCCAA 15 NFIB_NFI_full_dimeric_15_1 SELEX - 31195187 31195201 1.0E-06 TTGGCAACCCGCCAG 15 JDP2_bZIP_full_dimeric_9_1 SELEX + 31200840 31200848 1.0E-05 ATGAGTCAC 9 Elk3_ETS_DBD_monomeric_10_1 SELEX - 31199826 31199835 4.0E-06 ACCGGAAGTC 10 Irx3_homeodomain_DBD_dimeric_12_1 SELEX - 31199856 31199867 7.0E-06 TGACATGAAACA 12 RORA_2_MA0072.1 JASPAR - 31200926 31200939 4.0E-06 ATAAAATGGGTCAC 14 IRF2_MA0051.1 JASPAR + 31200947 31200964 8.0E-06 GAAATGTGAAACCCTGAA 18 V_ERG_03_M02062 TRANSFAC - 31199826 31199835 5.0E-06 ACCGGAAGTC 10 V_OBOX6_01_M01445 TRANSFAC - 31197267 31197281 3.0E-06 TCAAGAGGATTAACT 15 V_ERM_01_M01992 TRANSFAC - 31199826 31199835 7.0E-06 ACCGGAAGTC 10 V_SAP1A_01_M01167 TRANSFAC - 31199826 31199836 6.0E-06 TACCGGAAGTC 11 V_TGIF_01_M00418 TRANSFAC - 31197276 31197286 7.0E-06 AGTTGTCAAGA 11 V_AP1_Q2_M00173 TRANSFAC - 31200839 31200849 4.0E-06 AGTGACTCATT 11 V_STAT3_01_M00225 TRANSFAC + 31199823 31199843 1.0E-06 GGTGACTTCCGGTAAATCCCT 21 V_STAT3_01_M00225 TRANSFAC - 31199823 31199843 2.0E-06 AGGGATTTACCGGAAGTCACC 21 V_ELK1_04_M01165 TRANSFAC - 31199826 31199836 3.0E-06 TACCGGAAGTC 11 V_FLI1_Q6_M01208 TRANSFAC - 31199824 31199834 2.0E-06 CCGGAAGTCAC 11 V_AR_02_M00953 TRANSFAC - 31199096 31199122 8.0E-06 TCATACCGGACACACTGTTCTCAATTT 27 V_OBOX5_05_M03066 TRANSFAC - 31197264 31197280 7.0E-06 CAAGAGGATTAACTGAG 17 V_OBOX1_01_M01450 TRANSFAC - 31197265 31197281 2.0E-06 TCAAGAGGATTAACTGA 17 V_STAT3STAT3_Q3_M01220 TRANSFAC - 31195099 31195112 1.0E-05 TTGACGGGCACTGC 14 V_NF1A_Q6_M02103 TRANSFAC + 31195187 31195202 6.0E-06 CTGGCGGGTTGCCAAA 16 V_HMGIY_Q3_M01010 TRANSFAC - 31199132 31199146 1.0E-06 CGTGCATTTTTTTTT 15 V_DEAF1_01_M01001 TRANSFAC - 31191833 31191857 5.0E-06 ACAGTCCCGTGGGCTTCCGGGAGCC 25 V_HOXA13_02_M01297 TRANSFAC - 31200933 31200941 4.0E-06 AAATAAAAT 9 V_AR_Q6_01_M01996 TRANSFAC - 31199101 31199115 8.0E-06 GGACACACTGTTCTC 15 V_RELBP52_01_M01239 TRANSFAC + 31191988 31191997 4.0E-06 GGGGCTTTCC 10 V_RORA_Q4_M01138 TRANSFAC - 31200927 31200937 2.0E-06 AAAATGGGTCA 11 V_SP1_Q6_01_M00931 TRANSFAC - 31191448 31191457 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 31191517 31191526 4.0E-06 GGGGCGGGGC 10 V_DR4_Q2_M00965 TRANSFAC + 31195286 31195302 6.0E-06 TGTCCTCCAGAGACCCA 17 V_IRF_Q6_01_M00972 TRANSFAC - 31200781 31200791 9.0E-06 GAAAGGGAAAG 11 V_NFAT3_Q3_M01734 TRANSFAC - 31199129 31199138 6.0E-06 TTTTTTTCCT 10 V_OCT1_01_M00135 TRANSFAC + 31199879 31199897 9.0E-06 ATCCTAATGCTAATGCCAC 19 V_AREB6_04_M00415 TRANSFAC + 31199855 31199863 8.0E-06 CTGTTTCAT 9 V_NKX24_01_M01350 TRANSFAC + 31197270 31197285 2.0E-06 TAATCCTCTTGACAAC 16 V_AIRE_02_M01000 TRANSFAC + 31192625 31192649 4.0E-06 GCTTCTGACTTGGGTCTGTTTCTGA 25 V_TCFAP2E_04_M02926 TRANSFAC + 31199126 31199139 2.0E-06 AGAAGGAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 31199127 31199140 4.0E-06 GAAGGAAAAAAAAA 14 V_LDSPOLYA_B_M00317 TRANSFAC + 31199213 31199228 9.0E-06 CTCCTGTTTTCACATC 16 V_PEA3_01_M01991 TRANSFAC - 31199826 31199835 8.0E-06 ACCGGAAGTC 10 V_AR_03_M00956 TRANSFAC - 31199096 31199122 3.0E-06 TCATACCGGACACACTGTTCTCAATTT 27 V_BCL6_02_M01185 TRANSFAC - 31192372 31192385 1.0E-06 ATCTTTCTTGGGTT 14 V_AP1_Q6_M00174 TRANSFAC - 31200839 31200849 2.0E-06 AGTGACTCATT 11 V_WT1_Q6_01_M02036 TRANSFAC + 31191561 31191570 4.0E-06 CGCCCCCGCC 10 V_TAL1_Q6_M00993 TRANSFAC + 31191995 31192004 1.0E-06 TCCATCTGCT 10 V_GC_01_M00255 TRANSFAC - 31191446 31191459 6.0E-06 CAGGGGCGGGGCCG 14 V_ELK1_06_M02059 TRANSFAC - 31199826 31199835 4.0E-06 ACCGGAAGTC 10 V_OBOX5_02_M01480 TRANSFAC - 31197264 31197280 7.0E-06 CAAGAGGATTAACTGAG 17 V_HELIOSA_02_M01004 TRANSFAC + 31199126 31199136 6.0E-06 AGAAGGAAAAA 11 V_PR_01_M00954 TRANSFAC - 31199096 31199122 9.0E-06 TCATACCGGACACACTGTTCTCAATTT 27 V_ZFP105_03_M02827 TRANSFAC - 31200930 31200944 4.0E-06 TACAAATAAAATGGG 15 V_SAP1A_02_M01983 TRANSFAC - 31199826 31199835 7.0E-06 ACCGGAAGTC 10 V_CREL_01_M00053 TRANSFAC + 31191988 31191997 6.0E-06 GGGGCTTTCC 10 V_IRF2_01_M00063 TRANSFAC + 31200947 31200959 1.0E-06 GAAATGTGAAACC 13 V_STAT1_01_M00224 TRANSFAC + 31199823 31199843 3.0E-06 GGTGACTTCCGGTAAATCCCT 21 V_STAT1_01_M00224 TRANSFAC - 31199823 31199843 6.0E-06 AGGGATTTACCGGAAGTCACC 21 V_AP1_Q4_M00188 TRANSFAC - 31200839 31200849 3.0E-06 AGTGACTCATT 11 V_SP1_Q6_M00196 TRANSFAC - 31191447 31191459 4.0E-06 CAGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 31191516 31191528 4.0E-06 GCGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 31191556 31191568 9.0E-06 CGGGGGCGGAGCC 13 V_IRF3_Q3_M01279 TRANSFAC - 31199127 31199139 6.0E-06 TTTTTTTTCCTTC 13 V_MAZ_Q6_01_M02023 TRANSFAC - 31192453 31192466 3.0E-06 GTGGGAGGGGAGCA 14 V_MAZ_Q6_01_M02023 TRANSFAC - 31200746 31200759 1.0E-06 GAGGGAGGGAAGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC - 31200750 31200763 3.0E-06 GAGGGAGGGAGGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC - 31200795 31200808 1.0E-06 AGGGGAGGAGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 31200800 31200813 0.0E+00 GTGGGAGGGGAGGA 14 V_OCT1_05_M00161 TRANSFAC - 31199882 31199895 8.0E-06 GGCATTAGCATTAG 14 V_EGR1_Q6_M01873 TRANSFAC - 31191560 31191569 4.0E-06 GCGGGGGCGG 10 V_ERG_01_M01752 TRANSFAC - 31199827 31199835 4.0E-06 ACCGGAAGT 9 V_OBOX2_01_M01364 TRANSFAC - 31197265 31197281 4.0E-06 TCAAGAGGATTAACTGA 17 V_CETS2_01_M01989 TRANSFAC - 31199826 31199835 7.0E-06 ACCGGAAGTC 10 V_ISRE_01_M00258 TRANSFAC - 31200946 31200960 2.0E-06 GGGTTTCACATTTCC 15 V_JUNDM2_04_M02876 TRANSFAC + 31200836 31200851 5.0E-06 CTGAATGAGTCACTCT 16 V_NFE4_Q5_M02105 TRANSFAC + 31200793 31200804 8.0E-06 CCCCCTCTCCTC 12 V_PITX3_01_M01343 TRANSFAC - 31197264 31197279 3.0E-06 AAGAGGATTAACTGAG 16 V_GR_01_M00955 TRANSFAC - 31199096 31199122 7.0E-06 TCATACCGGACACACTGTTCTCAATTT 27 V_GRE_C_M00205 TRANSFAC - 31199101 31199116 6.0E-06 CGGACACACTGTTCTC 16 V_CRX_02_M01436 TRANSFAC - 31197266 31197281 6.0E-06 TCAAGAGGATTAACTG 16 V_PAX8_01_M00717 TRANSFAC - 31199262 31199276 9.0E-06 CTCTCTTGCATGAAA 15 V_ELK1_02_M00025 TRANSFAC - 31199825 31199838 2.0E-06 TTTACCGGAAGTCA 14 V_CETS1P54_01_M00032 TRANSFAC - 31199826 31199835 5.0E-06 ACCGGAAGTC 10 V_CTCF_02_M01259 TRANSFAC + 31192234 31192253 0.0E+00 CTTTGGCCACCAGATGGCAG 20 V_PEA3_02_M02066 TRANSFAC - 31199826 31199835 8.0E-06 ACCGGAAGTC 10 V_OCT4_02_M01124 TRANSFAC + 31199879 31199893 5.0E-06 ATCCTAATGCTAATG 15 V_CTCF_01_M01200 TRANSFAC + 31192236 31192255 0.0E+00 TTGGCCACCAGATGGCAGCC 20 V_PAX8_B_M00328 TRANSFAC - 31199260 31199277 1.0E-06 TCTCTCTTGCATGAAACA 18 V_CETS1P54_03_M01078 TRANSFAC - 31199823 31199838 6.0E-06 TTTACCGGAAGTCACC 16 V_HOXD9_Q2_M01834 TRANSFAC - 31200934 31200943 8.0E-06 ACAAATAAAA 10 V_TFIII_Q6_M00706 TRANSFAC - 31200756 31200764 6.0E-06 AGAGGGAGG 9 V_SP4_Q5_M01273 TRANSFAC + 31191448 31191458 8.0E-06 GCCCCGCCCCT 11 V_SP4_Q5_M01273 TRANSFAC + 31191517 31191527 2.0E-06 GCCCCGCCCCG 11 V_OTX2_Q3_M01719 TRANSFAC - 31197267 31197279 1.0E-05 AAGAGGATTAACT 13 V_YY1_03_M02044 TRANSFAC - 31195110 31195121 9.0E-06 GAGGCCATGTTG 12 V_ERM_02_M02069 TRANSFAC - 31199826 31199835 8.0E-06 ACCGGAAGTC 10 V_MAZR_01_M00491 TRANSFAC - 31191434 31191446 9.0E-06 GGGGGGGGGGCAG 13 V_GABPBETA_Q3_M01876 TRANSFAC - 31199825 31199835 1.0E-05 ACCGGAAGTCA 11 V_EHF_06_M02745 TRANSFAC - 31199825 31199839 8.0E-06 ATTTACCGGAAGTCA 15 V_OBOX2_02_M03064 TRANSFAC - 31197265 31197281 4.0E-06 TCAAGAGGATTAACTGA 17 V_AP1FJ_Q2_M00172 TRANSFAC - 31200839 31200849 3.0E-06 AGTGACTCATT 11 V_PITX1_01_M01484 TRANSFAC - 31197265 31197281 3.0E-06 TCAAGAGGATTAACTGA 17 V_NRF2_01_M00108 TRANSFAC - 31199826 31199835 5.0E-06 ACCGGAAGTC 10 V_STAT1STAT1_Q3_M01212 TRANSFAC - 31199827 31199839 5.0E-06 ATTTACCGGAAGT 13 V_EGR1_06_M02744 TRANSFAC + 31191559 31191572 9.0E-06 TCCGCCCCCGCCTG 14 V_CETS1_02_M02063 TRANSFAC - 31199826 31199835 8.0E-06 ACCGGAAGTC 10 V_SRF_06_M02916 TRANSFAC + 31199127 31199143 2.0E-06 GAAGGAAAAAAAAATGC 17 V_EWSR1FLI1_01_M02252 TRANSFAC - 31200743 31200760 0.0E+00 GGAGGGAGGGAAGGAGAG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 31200747 31200764 6.0E-06 AGAGGGAGGGAGGGAAGG 18 V_GSC_01_M01428 TRANSFAC + 31197264 31197280 1.0E-05 CTCAGTTAATCCTCTTG 17 V_NET_02_M02060 TRANSFAC - 31199826 31199835 8.0E-06 ACCGGAAGTC 10 V_IRF1_01_M00062 TRANSFAC + 31200947 31200959 6.0E-06 GAAATGTGAAACC 13 V_CTF1_01_M01196 TRANSFAC - 31195187 31195200 7.0E-06 TGGCAACCCGCCAG 14 V_SP1_Q2_01_M00933 TRANSFAC + 31191449 31191458 7.0E-06 CCCCGCCCCT 10 V_MAFK_04_M02880 TRANSFAC + 31199133 31199147 0.0E+00 AAAAAAAATGCACGA 15 V_SP1_Q4_01_M00932 TRANSFAC - 31191447 31191459 3.0E-06 CAGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC - 31191516 31191528 6.0E-06 GCGGGGCGGGGCC 13 V_OBOX5_01_M01381 TRANSFAC - 31197264 31197280 3.0E-06 CAAGAGGATTAACTGAG 17 V_OBOX6_02_M03068 TRANSFAC - 31197267 31197281 3.0E-06 TCAAGAGGATTAACT 15 V_OBOX3_02_M03065 TRANSFAC - 31197265 31197281 1.0E-06 TCAAGAGGATTAACTGA 17 V_TCF3_05_M02920 TRANSFAC + 31199127 31199141 2.0E-06 GAAGGAAAAAAAAAT 15 V_TCF3_05_M02920 TRANSFAC + 31199128 31199142 2.0E-06 AAGGAAAAAAAAATG 15 TLX1_NFIC_MA0119.1 JASPAR - 31195187 31195200 7.0E-06 TGGCAACCCGCCAG 14 V_OTX1_01_M01366 TRANSFAC - 31197264 31197280 1.0E-05 CAAGAGGATTAACTGAG 17 V_OBOX6_06_M03067 TRANSFAC + 31197264 31197280 3.0E-06 CTCAGTTAATCCTCTTG 17 V_OBOX3_01_M01466 TRANSFAC - 31197265 31197281 1.0E-06 TCAAGAGGATTAACTGA 17 V_RORA2_01_M00157 TRANSFAC - 31200926 31200938 5.0E-06 TAAAATGGGTCAC 13 V_NF1_Q6_M00193 TRANSFAC + 31200664 31200681 5.0E-06 ACTTGGCTGGCATTTAAA 18 V_ETV3_02_M02068 TRANSFAC - 31199826 31199835 9.0E-06 ACCGGAAGTC 10 V_NKX21_01_M01312 TRANSFAC + 31197270 31197285 8.0E-06 TAATCCTCTTGACAAC 16 V_HSF1_Q6_01_M02017 TRANSFAC - 31199236 31199249 2.0E-06 TAAGTTTCTGGAAG 14 V_ER_Q6_M00191 TRANSFAC + 31200916 31200934 4.0E-06 TCAATGCATGGTGACCCAT 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.