Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ARR3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 407 arrestin 3, retinal (X-arrestin) chrX + 69483184 - 69488684 69488184 Transcription Factor Binding Sites   Download all TFBS in the ARR3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints PBX1_MA0070.1 JASPAR + 69488121 69488132 3.0E-06 CCACCAATCAAA 12 PITX1_homeodomain_full_monomeric_9_1 SELEX + 69484870 69484878 5.0E-06 TTTAATCCA 9 FEV_MA0156.1 JASPAR + 69484850 69484857 1.0E-05 CAGGAAAT 8 HMX2_homeodomain_DBD_monomeric_11_1 SELEX + 69488123 69488133 8.0E-06 ACCAATCAAAA 11 REST_MA0138.2 JASPAR + 69484831 69484851 0.0E+00 TTCAGCACCTAGGACAGCACA 21 RREB1_MA0073.1 JASPAR + 69488121 69488140 3.0E-06 CCACCAATCAAAACACTCAG 20 V_ZSCAN4_03_M02838 TRANSFAC + 69487617 69487633 2.0E-06 CTGCTGTGCACATAAGC 17 V_OBOX5_05_M03066 TRANSFAC - 69484866 69484882 6.0E-06 TAGATGGATTAAATCGC 17 V_NRSF_Q4_M01028 TRANSFAC - 69484832 69484850 8.0E-06 GTGCTGTCCTAGGTGCTGA 19 V_OBOX1_01_M01450 TRANSFAC - 69484867 69484883 7.0E-06 ATAGATGGATTAAATCG 17 V_ACAAT_B_M00309 TRANSFAC - 69488121 69488129 8.0E-06 GATTGGTGG 9 V_GM397_03_M02760 TRANSFAC - 69487616 69487632 2.0E-06 CTTATGTGCACAGCAGG 17 V_GM397_03_M02760 TRANSFAC + 69487617 69487633 0.0E+00 CTGCTGTGCACATAAGC 17 V_HNF4_Q6_M00967 TRANSFAC + 69487667 69487675 2.0E-06 AAAGTCCAA 9 V_BRN2_01_M00145 TRANSFAC - 69488103 69488118 6.0E-06 GTCATGGGAAAAGAAT 16 V_NRSE_B_M00325 TRANSFAC + 69484831 69484851 1.0E-06 TTCAGCACCTAGGACAGCACA 21 V_OBOX5_02_M01480 TRANSFAC - 69484866 69484882 6.0E-06 TAGATGGATTAAATCGC 17 V_OBOX2_01_M01364 TRANSFAC - 69484867 69484883 6.0E-06 ATAGATGGATTAAATCG 17 V_PBX1_01_M00096 TRANSFAC + 69488123 69488131 1.0E-05 ACCAATCAA 9 V_REST_01_M01256 TRANSFAC - 69484834 69484855 0.0E+00 TTCCTGTGCTGTCCTAGGTGCT 22 V_ZIC3_05_M02941 TRANSFAC - 69487613 69487627 0.0E+00 GTGCACAGCAGGAGT 15 V_TCF1_07_M02919 TRANSFAC - 69484870 69484883 8.0E-06 ATAGATGGATTAAA 14 V_HNF4A_02_M02868 TRANSFAC + 69487663 69487678 0.0E+00 TTCAAAAGTCCAATGT 16 V_FOXM1_01_M00630 TRANSFAC + 69487607 69487615 4.0E-06 AGATTGACT 9 V_NEUROD_02_M01288 TRANSFAC + 69487614 69487625 2.0E-06 CTCCTGCTGTGC 12 V_OTX2_Q3_M01719 TRANSFAC - 69484869 69484881 5.0E-06 AGATGGATTAAAT 13 V_ZIC2_05_M02940 TRANSFAC - 69487613 69487627 3.0E-06 GTGCACAGCAGGAGT 15 V_OBOX2_02_M03064 TRANSFAC - 69484867 69484883 6.0E-06 ATAGATGGATTAAATCG 17 V_PITX1_01_M01484 TRANSFAC - 69484867 69484883 7.0E-06 ATAGATGGATTAAATCG 17 V_NRSF_01_M00256 TRANSFAC + 69484831 69484851 0.0E+00 TTCAGCACCTAGGACAGCACA 21 V_PBX1_02_M00124 TRANSFAC + 69488120 69488134 5.0E-06 CCCACCAATCAAAAC 15 V_REST_02_M02256 TRANSFAC + 69484831 69484851 0.0E+00 TTCAGCACCTAGGACAGCACA 21 V_STAT6_02_M00500 TRANSFAC - 69484851 69484858 1.0E-05 GATTTCCT 8 V_OBOX5_01_M01381 TRANSFAC - 69484866 69484882 5.0E-06 TAGATGGATTAAATCGC 17 V_OBOX3_02_M03065 TRANSFAC - 69484867 69484883 9.0E-06 ATAGATGGATTAAATCG 17 V_FEV_01_M02269 TRANSFAC + 69484850 69484857 1.0E-05 CAGGAAAT 8 V_OBOX6_06_M03067 TRANSFAC + 69484866 69484882 5.0E-06 GCGATTTAATCCATCTA 17 V_OBOX3_01_M01466 TRANSFAC - 69484867 69484883 9.0E-06 ATAGATGGATTAAATCG 17 V_ZIC1_05_M02939 TRANSFAC - 69487613 69487627 2.0E-06 GTGCACAGCAGGAGT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.