Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SH2D1A Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 4068 SH2 domain containing 1A chrX + 123475131 - 123480631 123480131 V_SAP1A_01_M01167 V_SAP1A_02_M01983 V_SAP1A_03_M02058 Transcription Factor Binding Sites   Download all TFBS in the SH2D1A promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 123476684 123476701 0.0E+00 ACAATTATAATTCACTTA 18 SOX10_HMG_full_dimeric_15_3 SELEX - 123481358 123481372 4.0E-06 ATGAATTTGATTCAA 15 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 123476684 123476700 0.0E+00 CAATTATAATTCACTTA 17 SOX21_HMG_DBD_dimeric_13_2 SELEX + 123481359 123481371 1.0E-05 TGAATCAAATTCA 13 SOX21_HMG_DBD_dimeric_13_2 SELEX - 123481359 123481371 1.0E-06 TGAATTTGATTCA 13 Arx_homeodomain_DBD_dimeric_13_1 SELEX - 123476683 123476695 7.0E-06 ATAATTCACTTAA 13 SRY_HMG_DBD_dimeric_13_2 SELEX + 123481359 123481371 7.0E-06 TGAATCAAATTCA 13 SRY_HMG_DBD_dimeric_13_2 SELEX - 123481359 123481371 3.0E-06 TGAATTTGATTCA 13 SOX9_HMG_full_dimeric_17_3 SELEX - 123481357 123481373 2.0E-06 GATGAATTTGATTCAAA 17 Tp53_p53l_DBD_dimeric_18_2 SELEX + 123481322 123481339 3.0E-06 CATTTGCCTAGGCATGTC 18 Tp53_p53l_DBD_dimeric_18_2 SELEX - 123481322 123481339 6.0E-06 GACATGCCTAGGCAAATG 18 Alx1_homeodomain_DBD_dimeric_13_1 SELEX - 123476683 123476695 4.0E-06 ATAATTCACTTAA 13 SOX7_HMG_full_dimeric_17_2 SELEX - 123481357 123481373 0.0E+00 GATGAATTTGATTCAAA 17 Pknox2_MEIS_DBD_dimeric_12_1 SELEX - 123477283 123477294 9.0E-06 TGAGAGGTGACA 12 SOX15_HMG_full_dimeric_15_3 SELEX + 123481358 123481372 3.0E-06 TTGAATCAAATTCAT 15 SOX15_HMG_full_dimeric_15_3 SELEX - 123481358 123481372 8.0E-06 ATGAATTTGATTCAA 15 ISX_homeodomain_DBD_dimeric_13_1 SELEX + 123476683 123476695 4.0E-06 TTAAGTGAATTAT 13 Sox1_HMG_DBD_dimeric_13_1 SELEX - 123483156 123483168 0.0E+00 TCAAAAACATTGA 13 ZNF238_C2H2_full_monomeric_13_1 SELEX - 123480381 123480393 2.0E-06 CAGCCAGATGTGC 13 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 123477283 123477294 8.0E-06 TGAGAGGTGACA 12 SOX8_HMG_full_dimeric_13_1 SELEX - 123481360 123481372 2.0E-06 ATGAATTTGATTC 13 Sox17_HMG_DBD_dimeric_15_2 SELEX + 123481358 123481372 1.0E-06 TTGAATCAAATTCAT 15 Sox17_HMG_DBD_dimeric_15_2 SELEX - 123481358 123481372 0.0E+00 ATGAATTTGATTCAA 15 ALX3_homeodomain_full_dimeric_13_1 SELEX - 123476683 123476695 5.0E-06 ATAATTCACTTAA 13 SOX2_HMG_full_dimeric_15_1 SELEX + 123481358 123481372 2.0E-06 TTGAATCAAATTCAT 15 SOX2_HMG_full_dimeric_15_1 SELEX - 123481358 123481372 1.0E-06 ATGAATTTGATTCAA 15 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX - 123483045 123483060 1.0E-05 TACCATTTGAAAGACA 16 SOX14_HMG_DBD_dimeric_13_1 SELEX - 123483156 123483168 8.0E-06 TCAAAAACATTGA 13 DRGX_homeodomain_DBD_dimeric_13_1 SELEX - 123476683 123476695 6.0E-06 ATAATTCACTTAA 13 Alx4_homeodomain_DBD_dimeric_13_1 SELEX - 123476683 123476695 5.0E-06 ATAATTCACTTAA 13 SOX14_HMG_DBD_dimeric_15_1 SELEX - 123481358 123481372 5.0E-06 ATGAATTTGATTCAA 15 NRL_bZIP_DBD_monomeric_11_1 SELEX + 123480291 123480301 8.0E-06 AAATTGCTGAG 11 Msx3_homeodomain_DBD_dimeric_18_1 SELEX - 123476684 123476701 0.0E+00 ACAATTATAATTCACTTA 18 PRRX1_homeodomain_full_dimeric_11_1 SELEX + 123476684 123476694 7.0E-06 TAAGTGAATTA 11 CART1_homeodomain_DBD_dimeric_13_1 SELEX - 123476683 123476695 9.0E-06 ATAATTCACTTAA 13 Uncx_homeodomain_DBD_dimeric_13_1 SELEX + 123476683 123476695 3.0E-06 TTAAGTGAATTAT 13 SOX18_HMG_full_dimeric_15_3 SELEX - 123481358 123481372 0.0E+00 ATGAATTTGATTCAA 15 Sox3_HMG_DBD_dimeric_17_3 SELEX - 123481357 123481373 0.0E+00 GATGAATTTGATTCAAA 17 SRY_HMG_DBD_dimeric_13_1 SELEX - 123483156 123483168 1.0E-06 TCAAAAACATTGA 13 MAFK_bZIP_full_monomeric_12_1 SELEX + 123480290 123480301 2.0E-06 TAAATTGCTGAG 12 TP53_MA0106.1 JASPAR - 123481323 123481342 0.0E+00 TGAGACATGCCTAGGCAAAT 20 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 123476684 123476701 0.0E+00 ACAATTATAATTCACTTA 18 TBX1_TBX_DBD_dimeric_20_1 SELEX + 123480303 123480322 1.0E-06 TCGTTTTAACTGAAGTGTGA 20 TBX1_TBX_DBD_dimeric_20_1 SELEX - 123480369 123480388 8.0E-06 AGATGTGCAAAAAAGAGAGA 20 Sox1_HMG_DBD_dimeric_15_2 SELEX + 123481358 123481372 2.0E-06 TTGAATCAAATTCAT 15 Sox1_HMG_DBD_dimeric_15_2 SELEX - 123481358 123481372 1.0E-06 ATGAATTTGATTCAA 15 V_SOX40_04_M02908 TRANSFAC - 123476687 123476702 7.0E-06 GACAATTATAATTCAC 16 V_SRY_07_M02813 TRANSFAC + 123476687 123476702 0.0E+00 GTGAATTATAATTGTC 16 V_SRY_07_M02813 TRANSFAC - 123476687 123476702 1.0E-06 GACAATTATAATTCAC 16 V_ZFX_01_M01593 TRANSFAC - 123480461 123480476 7.0E-06 GGGCAGGCCGAGGAGG 16 V_EBOX_Q6_01_M01034 TRANSFAC - 123480401 123480410 6.0E-06 CCACCTGACT 10 V_OCT1_01_M00135 TRANSFAC + 123477266 123477284 5.0E-06 TTCCACATGCAAAATTCTG 19 V_P53_DECAMER_Q2_M00761 TRANSFAC + 123482228 123482237 9.0E-06 AAACAAGTCT 10 V_HNF3_Q6_01_M01012 TRANSFAC + 123476698 123476715 5.0E-06 TTGTCTGTTTGCTTGTCT 18 V_SOX21_03_M02803 TRANSFAC + 123476687 123476702 2.0E-06 GTGAATTATAATTGTC 16 V_SOX21_03_M02803 TRANSFAC - 123476687 123476702 5.0E-06 GACAATTATAATTCAC 16 V_BRN2_01_M00145 TRANSFAC - 123481351 123481366 8.0E-06 TTGATTCAAAATGAAG 16 V_CDX_Q5_M00991 TRANSFAC + 123480028 123480045 3.0E-06 TACCAACAGAGACATGTA 18 V_P53_02_M00272 TRANSFAC + 123481331 123481340 4.0E-06 AGGCATGTCT 10 V_P53_02_M00272 TRANSFAC - 123481331 123481340 1.0E-06 AGACATGCCT 10 V_CEBPB_01_M00109 TRANSFAC - 123480186 123480199 3.0E-06 GGATTTTGCAAGAT 14 V_CEBPE_Q6_M01868 TRANSFAC + 123480184 123480197 5.0E-06 CAATCTTGCAAAAT 14 V_NKX31_02_M02782 TRANSFAC - 123476679 123476695 7.0E-06 ATAATTCACTTAACAAG 17 V_CEBPB_02_M00117 TRANSFAC + 123480186 123480199 5.0E-06 ATCTTGCAAAATCC 14 V_HNF3_Q6_M00791 TRANSFAC - 123476701 123476713 3.0E-06 ACAAGCAAACAGA 13 V_PAX5_01_M00143 TRANSFAC - 123476709 123476736 6.0E-06 CATAGGTCCAGTGAAGAAGACAGACAAG 28 V_OCT4_02_M01124 TRANSFAC + 123477266 123477280 7.0E-06 TTCCACATGCAAAAT 15 V_IRX5_01_M01472 TRANSFAC + 123480034 123480050 1.0E-05 CAGAGACATGTACAACT 17 V_GATA4_Q3_M00632 TRANSFAC - 123483139 123483150 5.0E-06 TGATAAAAGGCA 12 V_GATA1_05_M00346 TRANSFAC - 123483143 123483152 5.0E-06 ACTGATAAAA 10 V_POU5F1_01_M01307 TRANSFAC + 123477271 123477280 9.0E-06 CATGCAAAAT 10 V_BARHL1_01_M01332 TRANSFAC - 123476691 123476706 9.0E-06 AACAGACAATTATAAT 16 V_LUN1_01_M00480 TRANSFAC + 123477290 123477306 4.0E-06 TCTCAGAGACCTCAGGA 17 V_ZSCAN4_04_M02942 TRANSFAC - 123475338 123475353 9.0E-06 CCTGACACACAAATAA 16 V_TBX15_02_M01264 TRANSFAC + 123475351 123475368 3.0E-06 AGGTGCCAAGGTGTGGGA 18 V_SREBP_Q3_M00776 TRANSFAC - 123483091 123483102 4.0E-06 GCTATCACCCTA 12 V_BBX_03_M02739 TRANSFAC + 123476680 123476694 6.0E-06 TTGTTAAGTGAATTA 15 V_BBX_03_M02739 TRANSFAC - 123476680 123476694 1.0E-06 TAATTCACTTAACAA 15 V_EFC_Q6_M00626 TRANSFAC + 123483013 123483026 1.0E-06 AAATACTAGACAAA 14 V_FOXO1_04_M01969 TRANSFAC + 123480341 123480360 2.0E-06 GTAGACAACATCCTGTTGTT 20 V_FOXO1_04_M01969 TRANSFAC - 123480344 123480363 4.0E-06 CCCAACAACAGGATGTTGTC 20 V_BARHL2_01_M01446 TRANSFAC - 123476691 123476706 5.0E-06 AACAGACAATTATAAT 16 V_PIT1_Q6_M00802 TRANSFAC + 123481350 123481367 8.0E-06 GCTTCATTTTGAATCAAA 18 V_HMEF2_Q6_M00406 TRANSFAC - 123476684 123476699 6.0E-06 AATTATAATTCACTTA 16 V_SOX5_04_M02910 TRANSFAC - 123476685 123476699 5.0E-06 AATTATAATTCACTT 15 V_IRXB3_01_M01377 TRANSFAC + 123480034 123480050 7.0E-06 CAGAGACATGTACAACT 17 V_SOX14_03_M02798 TRANSFAC + 123476687 123476702 0.0E+00 GTGAATTATAATTGTC 16 V_SOX14_03_M02798 TRANSFAC - 123476687 123476702 0.0E+00 GACAATTATAATTCAC 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.