Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C9orf170 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 401535 chromosome 9 open reading frame 170 chr9 + 89758558 - 89764058 89763558 Transcription Factor Binding Sites   Download all TFBS in the C9orf170 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 89762295 89762310 8.0E-06 TTACATAAGAAATAAG 16 HOXD12_homeodomain_DBD_monomeric_9_1 SELEX - 89767417 89767425 5.0E-06 ATAATAAAA 9 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX - 89767416 89767425 6.0E-06 ATAATAAAAC 10 SP3_C2H2_DBD_monomeric_11_1 SELEX - 89763699 89763709 1.0E-05 CCCACACCCCC 11 MYF6_bHLH_full_dimeric_10_1 SELEX + 89764889 89764898 7.0E-06 AACATCTGTT 10 MYF6_bHLH_full_dimeric_10_1 SELEX - 89764889 89764898 8.0E-06 AACAGATGTT 10 SPIC_ETS_full_monomeric_14_1 SELEX + 89763269 89763282 1.0E-06 AAAAAAAGGTAGTA 14 EMX2_homeodomain_DBD_dimeric_14_1 SELEX + 89762292 89762305 8.0E-06 TAATTACATAAGAA 14 NHLH1_MA0048.1 JASPAR + 89763397 89763408 1.0E-06 TCGCAGCTGCGC 12 NHLH1_MA0048.1 JASPAR - 89763397 89763408 4.0E-06 GCGCAGCTGCGA 12 NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX + 89762196 89762204 5.0E-06 ATAAGTCAA 9 PDX1_homeodomain_DBD_dimeric_18_1 SELEX + 89762182 89762199 5.0E-06 CTAATTACTCACAAATAA 18 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 89762182 89762199 8.0E-06 TTATTTGTGAGTAATTAG 18 TEF_bZIP_DBD_dimeric_12_1 SELEX + 89762293 89762304 5.0E-06 AATTACATAAGA 12 HLF_bZIP_full_dimeric_12_1 SELEX + 89762293 89762304 7.0E-06 AATTACATAAGA 12 HLF_bZIP_full_dimeric_12_1 SELEX - 89762293 89762304 8.0E-06 TCTTATGTAATT 12 EWSR1-FLI1_MA0149.1 JASPAR + 89763276 89763293 3.0E-06 GGTAGTAAGGCAGGAGGT 18 NFIL3_MA0025.1 JASPAR - 89762551 89762561 3.0E-06 TTATGTAAGAA 11 GATA5_GATA_DBD_monomeric_8_1 SELEX + 89763251 89763258 7.0E-06 AGATAAGA 8 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX - 89768128 89768145 3.0E-06 GCGGTCAGAAGTTCAAGA 18 DBP_bZIP_full_dimeric_12_1 SELEX + 89762293 89762304 4.0E-06 AATTACATAAGA 12 DBP_bZIP_full_dimeric_12_1 SELEX - 89762293 89762304 9.0E-06 TCTTATGTAATT 12 GATA4_GATA_DBD_monomeric_8_1 SELEX + 89763251 89763258 7.0E-06 AGATAAGA 8 TEAD1_TEA_full_monomeric_10_1 SELEX - 89763641 89763650 3.0E-06 CACATTCCAA 10 POU6F2_POU_DBD_dimeric_16_1 SELEX - 89762291 89762306 4.0E-06 TTTCTTATGTAATTAA 16 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX - 89767417 89767425 3.0E-06 ATAATAAAA 9 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX + 89763383 89763396 1.0E-06 GAGTCATGAAGTCA 14 Tcf21_bHLH_DBD_dimeric_14_1 SELEX + 89764887 89764900 6.0E-06 CAAACATCTGTTGC 14 MAFK_bZIP_full_dimeric_15_1 SELEX + 89764830 89764844 6.0E-06 ATGCTGAATCTGCTG 15 Gata1_MA0035.2 JASPAR + 89763249 89763259 7.0E-06 GGAGATAAGAG 11 GATA3_GATA_full_monomeric_8_1 SELEX + 89763251 89763258 7.0E-06 AGATAAGA 8 HOXA13_homeodomain_full_monomeric_10_1 SELEX - 89767416 89767425 8.0E-06 ATAATAAAAC 10 NFIL3_bZIP_DBD_dimeric_12_1 SELEX + 89762293 89762304 2.0E-06 AATTACATAAGA 12 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 89762182 89762199 6.0E-06 CTAATTACTCACAAATAA 18 TEAD3_TEA_DBD_monomeric_8_1 SELEX - 89763642 89763649 1.0E-05 ACATTCCA 8 EN1_homeodomain_full_dimeric_14_1 SELEX + 89762292 89762305 1.0E-05 TAATTACATAAGAA 14 Pou5f1_MA0142.1 JASPAR - 89762293 89762307 6.0E-06 ATTTCTTATGTAATT 15 TEAD4_TEA_DBD_monomeric_10_1 SELEX - 89763641 89763650 4.0E-06 CACATTCCAA 10 IRF3_IRF_full_trimeric_21_1 SELEX + 89763420 89763440 3.0E-06 CGGGAACGGGAACGGGAACTG 21 POU3F3_POU_DBD_dimeric_12_1 SELEX + 89762295 89762306 9.0E-06 TTACATAAGAAA 12 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 89762182 89762199 5.0E-06 CTAATTACTCACAAATAA 18 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 89762183 89762200 9.0E-06 CTTATTTGTGAGTAATTA 18 NHLH1_bHLH_full_dimeric_10_1 SELEX + 89763398 89763407 2.0E-06 CGCAGCTGCG 10 NHLH1_bHLH_full_dimeric_10_1 SELEX - 89763398 89763407 2.0E-06 CGCAGCTGCG 10 BATF3_bZIP_DBD_dimeric_14_1 SELEX + 89763386 89763399 4.0E-06 TCATGAAGTCATCG 14 CDX2_homeodomain_DBD_monomeric_9_1 SELEX - 89767417 89767425 3.0E-06 ATAATAAAA 9 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 89762509 89762521 4.0E-06 GAAAAGAAAAACA 13 NFIA_NFI_full_monomeric_10_1 SELEX + 89763817 89763826 2.0E-06 AGTGCCAAGT 10 NFE2L2_MA0150.1 JASPAR - 89763379 89763389 3.0E-06 ATGACTCTGCA 11 CDX1_homeodomain_DBD_monomeric_9_1 SELEX - 89767417 89767425 3.0E-06 ATAATAAAA 9 Zfx_MA0146.1 JASPAR - 89764980 89764993 2.0E-06 GGGGCTGAGGCCTG 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 89762502 89762515 9.0E-06 AAAAACAAGAAAAA 14 V_DMRT4_01_M01149 TRANSFAC - 89763318 89763330 2.0E-06 AAAGTAGCAAGTT 13 V_FOXP1_01_M00987 TRANSFAC + 89762508 89762527 0.0E+00 TTGTTTTTCTTTTCTTCTTT 20 V_FOXP1_01_M00987 TRANSFAC + 89768077 89768096 1.0E-06 TGTTTTATATTTTTTAGTAC 20 V_CEBPG_Q6_M00622 TRANSFAC - 89762550 89762562 2.0E-06 TTTATGTAAGAAA 13 V_FOXP3_Q4_M00992 TRANSFAC + 89764888 89764904 7.0E-06 AAACATCTGTTGCTTAT 17 V_ATF5_01_M01295 TRANSFAC + 89763905 89763915 8.0E-06 TTTCTTCATTA 11 V_ATF5_01_M01295 TRANSFAC + 89765008 89765018 9.0E-06 TCTCTTCCTTC 11 V_GATA2_02_M00348 TRANSFAC + 89763249 89763258 5.0E-06 GGAGATAAGA 10 V_SMAD3_Q6_01_M01888 TRANSFAC - 89767349 89767361 2.0E-06 AGCCAGACAGAGC 13 TAL1_TCF3_MA0091.1 JASPAR + 89764887 89764898 1.0E-06 CAAACATCTGTT 12 V_ZFX_01_M01593 TRANSFAC + 89764977 89764992 2.0E-06 CTGCAGGCCTCAGCCC 16 V_BCL6_01_M01183 TRANSFAC + 89762504 89762519 0.0E+00 TTTCTTGTTTTTCTTT 16 V_POU5F1_02_M02245 TRANSFAC - 89762293 89762307 6.0E-06 ATTTCTTATGTAATT 15 V_ATF3_Q6_01_M01863 TRANSFAC + 89763388 89763398 9.0E-06 ATGAAGTCATC 11 V_HNF3_Q6_01_M01012 TRANSFAC + 89762504 89762521 9.0E-06 TTTCTTGTTTTTCTTTTC 18 V_AREB6_04_M00415 TRANSFAC + 89763863 89763871 8.0E-06 CTGTTTCAT 9 V_PU1_Q4_M01172 TRANSFAC + 89762510 89762528 2.0E-06 GTTTTTCTTTTCTTCTTTC 19 V_PU1_Q4_M01172 TRANSFAC + 89765003 89765021 3.0E-06 AGCATTCTCTTCCTTCTTC 19 V_NFAT2_01_M01748 TRANSFAC + 89763800 89763808 3.0E-06 ATGGAAAAA 9 V_BRN2_01_M00145 TRANSFAC + 89762296 89762311 6.0E-06 TACATAAGAAATAAGT 16 V_TCFAP2E_04_M02926 TRANSFAC + 89763263 89763276 4.0E-06 TTTTTGAAAAAAAG 14 V_TCFAP2E_04_M02926 TRANSFAC + 89763530 89763543 1.0E-06 AGCGAGAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 89768082 89768095 3.0E-06 TACTAAAAAATATA 14 V_CDX_Q5_M00991 TRANSFAC + 89762187 89762204 5.0E-06 TACTCACAAATAAGTCAA 18 V_CDX_Q5_M00991 TRANSFAC + 89762293 89762310 6.0E-06 AATTACATAAGAAATAAG 18 V_CDX_Q5_M00991 TRANSFAC - 89767409 89767426 4.0E-06 CATAATAAAACAAGTATA 18 V_CEBPB_01_M00109 TRANSFAC + 89767398 89767411 2.0E-06 TTATTTAGAAATAT 14 V_TAL1_GATA1_01_M02243 TRANSFAC + 89763240 89763257 3.0E-06 GTTTTTGCTGGAGATAAG 18 V_RPC155_01_M01798 TRANSFAC - 89768126 89768141 2.0E-06 TCAGAAGTTCAAGATC 16 V_HNF6_Q6_M00639 TRANSFAC + 89762196 89762207 7.0E-06 ATAAGTCAATGG 12 V_ELF4_04_M02850 TRANSFAC + 89763531 89763547 8.0E-06 GCGAGAAAAAAAAAAGC 17 V_ELF4_04_M02850 TRANSFAC - 89768078 89768094 4.0E-06 ACTAAAAAATATAAAAC 17 V_ELF4_04_M02850 TRANSFAC - 89768081 89768097 3.0E-06 TGTACTAAAAAATATAA 17 V_HELIOSA_02_M01004 TRANSFAC + 89763798 89763808 2.0E-06 AAATGGAAAAA 11 V_ZFP105_03_M02827 TRANSFAC - 89762505 89762519 7.0E-06 AAAGAAAAACAAGAA 15 V_HNF3G_Q4_M02015 TRANSFAC - 89764885 89764892 7.0E-06 TGTTTGTT 8 V_E4BP4_01_M00045 TRANSFAC - 89762293 89762304 4.0E-06 TCTTATGTAATT 12 V_HNF1_Q6_M00790 TRANSFAC - 89764893 89764910 8.0E-06 TGGCTAATAAGCAACAGA 18 V_HNF1_Q6_M00790 TRANSFAC + 89768077 89768094 5.0E-06 TGTTTTATATTTTTTAGT 18 V_NFAT_Q6_M00302 TRANSFAC + 89763798 89763809 5.0E-06 AAATGGAAAAAG 12 V_E12_Q6_M00693 TRANSFAC + 89763974 89763984 8.0E-06 AGCAGGTGGCA 11 V_IRX4_01_M01410 TRANSFAC - 89767406 89767422 7.0E-06 ATAAAACAAGTATATTT 17 V_IRX4_01_M01410 TRANSFAC + 89767407 89767423 3.0E-06 AATATACTTGTTTTATT 17 V_AMEF2_Q6_M00403 TRANSFAC - 89767392 89767409 3.0E-06 ATTTCTAAATAAGGCAAA 18 V_IRF_Q6_M00772 TRANSFAC + 89762508 89762522 9.0E-06 TTGTTTTTCTTTTCT 15 V_HNF1_Q6_01_M01011 TRANSFAC - 89768075 89768095 5.0E-06 TACTAAAAAATATAAAACAAT 21 V_JUNDM2_04_M02876 TRANSFAC + 89762181 89762196 6.0E-06 ACTAATTACTCACAAA 16 V_HOX13_01_M00023 TRANSFAC + 89763899 89763928 6.0E-06 GTCGAGTTTCTTCATTAGTGCTGCAGCAAG 30 Tal1_Gata1_MA0140.1 JASPAR + 89763240 89763257 3.0E-06 GTTTTTGCTGGAGATAAG 18 V_TAL1BETAE47_01_M00065 TRANSFAC - 89764886 89764901 1.0E-06 AGCAACAGATGTTTGT 16 V_GRE_C_M00205 TRANSFAC - 89764873 89764888 7.0E-06 TGTTCCCACAGTTCTG 16 V_GATA1_09_M02254 TRANSFAC + 89763249 89763259 7.0E-06 GGAGATAAGAG 11 V_RREB1_01_M00257 TRANSFAC - 89763697 89763710 8.0E-06 CCCCACACCCCCAG 14 V_ELK1_02_M00025 TRANSFAC + 89763468 89763481 4.0E-06 CCAGCCGGAAATGT 14 V_NKX3A_01_M00451 TRANSFAC + 89762304 89762315 9.0E-06 AAATAAGTGAAT 12 V_NKX3A_01_M00451 TRANSFAC - 89767408 89767419 4.0E-06 AAACAAGTATAT 12 V_SRF_Q5_02_M01007 TRANSFAC + 89767391 89767409 1.0E-06 TTTTGCCTTATTTAGAAAT 19 V_CTCF_02_M01259 TRANSFAC + 89763207 89763226 7.0E-06 GTGCTGCCAGGAGAGGGAAA 20 V_IRX3_01_M01318 TRANSFAC + 89767407 89767423 3.0E-06 AATATACTTGTTTTATT 17 V_SRF_03_M01304 TRANSFAC - 89767395 89767407 7.0E-06 TTCTAAATAAGGC 13 V_IRX5_01_M01472 TRANSFAC - 89767406 89767422 3.0E-06 ATAAAACAAGTATATTT 17 V_IRX5_01_M01472 TRANSFAC + 89767407 89767423 1.0E-06 AATATACTTGTTTTATT 17 V_FOXO1_Q5_M01216 TRANSFAC - 89762507 89762515 8.0E-06 AAAAACAAG 9 V_MAF_Q6_01_M00983 TRANSFAC + 89763379 89763389 2.0E-06 TGCAGAGTCAT 11 V_TAL1BETAITF2_01_M00070 TRANSFAC - 89764886 89764901 3.0E-06 AGCAACAGATGTTTGT 16 V_GATA4_Q3_M00632 TRANSFAC + 89762302 89762313 4.0E-06 AGAAATAAGTGA 12 V_GCNF_01_M00526 TRANSFAC - 89768123 89768140 0.0E+00 CAGAAGTTCAAGATCAGC 18 V_IRX3_02_M01485 TRANSFAC - 89767406 89767422 1.0E-05 ATAAAACAAGTATATTT 17 V_IRX3_02_M01485 TRANSFAC + 89767407 89767423 3.0E-06 AATATACTTGTTTTATT 17 V_VJUN_01_M00036 TRANSFAC - 89763385 89763400 7.0E-06 GCGATGACTTCATGAC 16 V_MTF1_06_M02882 TRANSFAC + 89762297 89762310 0.0E+00 ACATAAGAAATAAG 14 V_MTF1_06_M02882 TRANSFAC - 89762500 89762513 4.0E-06 AAACAAGAAAAACC 14 V_MTF1_06_M02882 TRANSFAC - 89762509 89762522 7.0E-06 AGAAAAGAAAAACA 14 V_MTF1_06_M02882 TRANSFAC - 89762514 89762527 9.0E-06 AAAGAAGAAAAGAA 14 V_MTF1_06_M02882 TRANSFAC + 89763262 89763275 1.0E-06 ATTTTTGAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 89767399 89767412 9.0E-06 TATTTAGAAATATA 14 V_FAC1_01_M00456 TRANSFAC - 89762502 89762515 9.0E-06 AAAAACAAGAAAAA 14 V_FAC1_01_M00456 TRANSFAC - 89762505 89762518 4.0E-06 AAGAAAAACAAGAA 14 V_TAL1_01_M01591 TRANSFAC + 89762512 89762524 8.0E-06 TTTTCTTTTCTTC 13 V_CEBPA_01_M00116 TRANSFAC + 89762292 89762305 5.0E-06 TAATTACATAAGAA 14 V_FOXL1_02_M02857 TRANSFAC - 89767410 89767425 8.0E-06 ATAATAAAACAAGTAT 16 V_FOXL1_02_M02857 TRANSFAC - 89767415 89767430 6.0E-06 GTGTCATAATAAAACA 16 V_TAL1ALPHAE47_01_M00066 TRANSFAC - 89764886 89764901 7.0E-06 AGCAACAGATGTTTGT 16 V_SIRT6_01_M01797 TRANSFAC + 89763251 89763258 7.0E-06 AGATAAGA 8 V_GATA3_02_M00350 TRANSFAC + 89763249 89763258 5.0E-06 GGAGATAAGA 10 V_PARP_Q3_M01211 TRANSFAC + 89762300 89762309 8.0E-06 TAAGAAATAA 10 V_RBPJK_01_M01112 TRANSFAC + 89764877 89764887 6.0E-06 ACTGTGGGAAC 11 V_NRF2_Q4_M00821 TRANSFAC + 89763378 89763390 1.0E-06 TTGCAGAGTCATG 13 V_FOXO3_01_M00477 TRANSFAC + 89762505 89762518 8.0E-06 TTCTTGTTTTTCTT 14 V_PLZF_02_M01075 TRANSFAC - 89767405 89767433 7.0E-06 TCGGTGTCATAATAAAACAAGTATATTTC 29 V_SIX4_01_M01374 TRANSFAC + 89767420 89767436 8.0E-06 TATTATGACACCGACCG 17 V_IRX2_01_M01405 TRANSFAC - 89767406 89767422 4.0E-06 ATAAAACAAGTATATTT 17 V_IRX2_01_M01405 TRANSFAC + 89767407 89767423 3.0E-06 AATATACTTGTTTTATT 17 V_SRF_02_M01257 TRANSFAC - 89767390 89767407 0.0E+00 TTCTAAATAAGGCAAAAA 18 V_SRF_06_M02916 TRANSFAC - 89762505 89762521 1.0E-05 GAAAAGAAAAACAAGAA 17 V_SRF_06_M02916 TRANSFAC + 89763263 89763279 9.0E-06 TTTTTGAAAAAAAGGTA 17 V_SRF_06_M02916 TRANSFAC + 89763531 89763547 3.0E-06 GCGAGAAAAAAAAAAGC 17 V_SRF_06_M02916 TRANSFAC + 89763532 89763548 2.0E-06 CGAGAAAAAAAAAAGCC 17 V_SRF_06_M02916 TRANSFAC + 89763533 89763549 2.0E-06 GAGAAAAAAAAAAGCCT 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 89763276 89763293 3.0E-06 GGTAGTAAGGCAGGAGGT 18 V_NFE2_Q6_M02104 TRANSFAC - 89763375 89763390 6.0E-06 CATGACTCTGCAATGG 16 V_SOX18_04_M02905 TRANSFAC + 89762307 89762322 3.0E-06 TAAGTGAATTCATTCT 16 V_SOX18_04_M02905 TRANSFAC - 89762307 89762322 9.0E-06 AGAATGAATTCACTTA 16 V_SOX1_03_M02802 TRANSFAC - 89762305 89762320 5.0E-06 AATGAATTCACTTATT 16 V_NFE2L2_01_M02263 TRANSFAC - 89763379 89763389 3.0E-06 ATGACTCTGCA 11 V_ZFP128_04_M02932 TRANSFAC - 89767401 89767414 7.0E-06 AGTATATTTCTAAA 14 V_P300_01_M00033 TRANSFAC + 89763233 89763246 2.0E-06 TCAGGGAGTTTTTG 14 V_HOXD10_01_M01375 TRANSFAC - 89767412 89767428 5.0E-06 GTCATAATAAAACAAGT 17 V_TCF11MAFG_01_M00284 TRANSFAC - 89763373 89763394 2.0E-06 ACTTCATGACTCTGCAATGGCC 22 V_IRXB3_01_M01377 TRANSFAC - 89767406 89767422 6.0E-06 ATAAAACAAGTATATTT 17 V_IRXB3_01_M01377 TRANSFAC + 89767407 89767423 3.0E-06 AATATACTTGTTTTATT 17 V_TCF3_05_M02920 TRANSFAC + 89763529 89763543 5.0E-06 GAGCGAGAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC + 89763530 89763544 3.0E-06 AGCGAGAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC + 89763531 89763545 5.0E-06 GCGAGAAAAAAAAAA 15 V_BRCA_01_M01082 TRANSFAC - 89759971 89759978 1.0E-05 TTCTGTTG 8 V_GLIS2_04_M02863 TRANSFAC - 89767399 89767412 4.0E-06 TATATTTCTAAATA 14 V_SMAD1_01_M01590 TRANSFAC - 89762515 89762526 2.0E-06 AAGAAGAAAAGA 12 V_NANOG_02_M01247 TRANSFAC - 89762500 89762519 8.0E-06 AAAGAAAAACAAGAAAAACC 20 V_NANOG_02_M01247 TRANSFAC - 89762506 89762525 9.0E-06 AGAAGAAAAGAAAAACAAGA 20 V_NANOG_02_M01247 TRANSFAC - 89762511 89762530 1.0E-06 GAGAAAGAAGAAAAGAAAAA 20 V_NANOG_02_M01247 TRANSFAC - 89762543 89762562 3.0E-06 TTTATGTAAGAAAAGAATGA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.