Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 401052 uncharacterized LOC401052 chr3 - 10052279 - 10057779 10052779 Transcription Factor Binding Sites   Download all TFBS in the promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SP8_C2H2_DBD_monomeric_12_1 SELEX + 10050861 10050872 2.0E-06 GCCACGCCCCCC 12 SP3_C2H2_DBD_monomeric_11_1 SELEX + 10050861 10050871 3.0E-06 GCCACGCCCCC 11 NFIA_NFI_full_dimeric_15_1 SELEX + 10057241 10057255 6.0E-06 TGGGCTCAATGCCAA 15 NFIA_NFI_full_dimeric_15_1 SELEX - 10057241 10057255 6.0E-06 TTGGCATTGAGCCCA 15 SPIC_ETS_full_monomeric_14_1 SELEX + 10057215 10057228 9.0E-06 AAGAAAAGGAAGAA 14 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 10050861 10050871 1.0E-06 GCCACGCCCCC 11 NHLH1_MA0048.1 JASPAR + 10050929 10050940 1.0E-05 CAGCAGCTGCTC 12 RFX4_RFX_DBD_dimeric_16_1 SELEX + 10052932 10052947 3.0E-06 CGTATCCATGGAGACC 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 10052932 10052947 2.0E-06 GGTCTCCATGGATACG 16 KLF14_C2H2_DBD_monomeric_14_1 SELEX + 10050860 10050873 5.0E-06 AGCCACGCCCCCCG 14 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 10054839 10054849 3.0E-06 AGCCTGAGGCT 11 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX - 10054839 10054849 1.0E-06 AGCCTCAGGCT 11 NFIX_NFI_full_dimeric_15_2 SELEX + 10057241 10057255 5.0E-06 TGGGCTCAATGCCAA 15 NFIX_NFI_full_dimeric_15_2 SELEX - 10057241 10057255 7.0E-06 TTGGCATTGAGCCCA 15 ISL2_homeodomain_DBD_monomeric_8_1 SELEX + 10052603 10052610 1.0E-05 GCACTTAA 8 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 10054839 10054849 6.0E-06 AGCCTGAGGCT 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX - 10054839 10054849 1.0E-06 AGCCTCAGGCT 11 KLF13_C2H2_full_monomeric_18_1 SELEX + 10050859 10050876 3.0E-06 GAGCCACGCCCCCCGCTG 18 Pax4_MA0068.1 JASPAR + 10057322 10057351 4.0E-06 GACAAATACCGAGCCTCCCACCCCCACTCC 30 Pax4_MA0068.1 JASPAR - 10057686 10057715 1.0E-05 AAAATAAAACAAAACCAATCGTTTTACAAC 30 ZIC4_C2H2_DBD_monomeric_15_1 SELEX + 10050865 10050879 4.0E-06 CGCCCCCCGCTGCGT 15 TCF7L1_HMG_full_monomeric_12_1 SELEX - 10057106 10057117 2.0E-06 AAACAGCAAAGG 12 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 10052932 10052947 6.0E-06 CGTATCCATGGAGACC 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 10052932 10052947 8.0E-06 GGTCTCCATGGATACG 16 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 10050930 10050939 2.0E-06 AGCAGCTGCT 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 10050930 10050939 2.0E-06 AGCAGCTGCT 10 FOXI1_MA0042.1 JASPAR - 10057438 10057449 2.0E-06 TGATGTTTGTAT 12 ZIC3_C2H2_full_monomeric_15_1 SELEX + 10050865 10050879 1.0E-06 CGCCCCCCGCTGCGT 15 ZIC3_C2H2_full_monomeric_15_1 SELEX - 10052684 10052698 1.0E-05 CACCCCCCGCAGCTT 15 SP4_C2H2_full_monomeric_17_1 SELEX + 10050858 10050874 1.0E-05 GGAGCCACGCCCCCCGC 17 Tcf7_HMG_DBD_monomeric_12_1 SELEX - 10057106 10057117 3.0E-06 AAACAGCAAAGG 12 SP1_C2H2_DBD_monomeric_11_1 SELEX + 10050861 10050871 5.0E-06 GCCACGCCCCC 11 RFX2_RFX_DBD_dimeric_16_1 SELEX + 10052932 10052947 3.0E-06 CGTATCCATGGAGACC 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 10052932 10052947 4.0E-06 GGTCTCCATGGATACG 16 EN1_homeodomain_full_dimeric_14_1 SELEX - 10050541 10050554 8.0E-06 TGATTGCACAAATA 14 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 10054839 10054849 2.0E-06 AGCCTGAGGCT 11 TFAP2C_TFAP_full_dimeric_11_1 SELEX - 10054839 10054849 1.0E-06 AGCCTCAGGCT 11 NFIB_NFI_full_dimeric_15_1 SELEX + 10057241 10057255 5.0E-06 TGGGCTCAATGCCAA 15 NFIB_NFI_full_dimeric_15_1 SELEX - 10057241 10057255 6.0E-06 TTGGCATTGAGCCCA 15 SRF_MADS_full_dimeric_16_1 SELEX - 10057618 10057633 6.0E-06 TTACCAAAGATGGTCT 16 Myf_MA0055.1 JASPAR - 10050929 10050940 1.0E-05 GAGCAGCTGCTG 12 ETS1_ETS_full_dimeric_18_1 SELEX - 10053426 10053443 6.0E-06 GCAGGAATGCCTTCCCTT 18 NHLH1_bHLH_full_dimeric_10_1 SELEX + 10050930 10050939 7.0E-06 AGCAGCTGCT 10 NHLH1_bHLH_full_dimeric_10_1 SELEX - 10050930 10050939 7.0E-06 AGCAGCTGCT 10 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 10054839 10054849 2.0E-06 AGCCTGAGGCT 11 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX - 10054839 10054849 1.0E-06 AGCCTCAGGCT 11 ZIC1_C2H2_full_monomeric_14_1 SELEX + 10050865 10050878 2.0E-06 CGCCCCCCGCTGCG 14 V_FOXP1_01_M00987 TRANSFAC + 10050963 10050982 2.0E-06 TTCTATATACTTGCTAGTAT 20 V_AP2ALPHA_Q6_M01857 TRANSFAC + 10057500 10057510 9.0E-06 AGCCTCCAGCC 11 V_ZFP187_03_M02830 TRANSFAC + 10057428 10057441 7.0E-06 TTCTGTGCTAATAC 14 V_TCFE2A_04_M02927 TRANSFAC + 10050917 10050933 6.0E-06 TGGACCAGATGTCAGCA 17 V_NF1_Q6_01_M00806 TRANSFAC + 10057241 10057257 2.0E-06 TGGGCTCAATGCCAAGA 17 V_NF1A_Q6_M02103 TRANSFAC + 10057241 10057256 2.0E-06 TGGGCTCAATGCCAAG 16 V_FOXO4_02_M00476 TRANSFAC + 10057228 10057241 6.0E-06 ACGTTGTTTTCCCT 14 V_STAT_Q6_M00777 TRANSFAC - 10048244 10048256 2.0E-06 AACACTTCTGGGA 13 V_MAFB_03_M02879 TRANSFAC - 10050540 10050554 9.0E-06 TGATTGCACAAATAC 15 V_HNF4ALPHA_Q6_M00638 TRANSFAC + 10057636 10057648 8.0E-06 CAGACCTTTGCCT 13 V_CEBP_01_M00159 TRANSFAC + 10057624 10057636 5.0E-06 TCTTTGGTAATAC 13 V_CEBP_Q2_M00190 TRANSFAC - 10050541 10050554 3.0E-06 TGATTGCACAAATA 14 V_AP2_Q6_01_M00915 TRANSFAC - 10052984 10052996 2.0E-06 CGGGCCCCAGGCT 13 V_AP4_Q6_02_M01860 TRANSFAC - 10057174 10057186 6.0E-06 GCAGCTGTGGTCA 13 V_CACCCBINDINGFACTOR_Q6_M00721 TRANSFAC - 10057569 10057584 0.0E+00 CAACCTGTGGGTGAAG 16 V_ZFP691_03_M02833 TRANSFAC - 10057359 10057375 1.0E-06 CGTAAAGTGCTCAGTAA 17 V_CDX_Q5_M00991 TRANSFAC + 10057676 10057693 0.0E+00 TATAGTAAGAGTTGTAAA 18 V_NKX62_Q2_M00489 TRANSFAC - 10057650 10057661 4.0E-06 GTAGTAAATACT 12 V_PPARGRXRA_01_M02262 TRANSFAC - 10057637 10057651 2.0E-06 CTAAGGCAAAGGTCT 15 RXRA_VDR_MA0074.1 JASPAR + 10057579 10057593 7.0E-06 AGGTTGCAGGGTTTG 15 V_MYF_01_M01302 TRANSFAC - 10050929 10050940 1.0E-05 GAGCAGCTGCTG 12 V_MYCMAX_02_M00123 TRANSFAC - 10056857 10056868 9.0E-06 AACCACATGTGT 12 V_SOX8_04_M02912 TRANSFAC - 10052354 10052367 3.0E-06 TCATTCATGCCAAC 14 V_CEBPB_02_M00117 TRANSFAC - 10050541 10050554 2.0E-06 TGATTGCACAAATA 14 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 10057436 10057446 4.0E-06 TGTTTGTATTA 11 V_SREBP_Q6_M01168 TRANSFAC + 10057465 10057479 9.0E-06 CGGCCCACCCCATGG 15 V_ASCL2_03_M02737 TRANSFAC + 10050927 10050943 0.0E+00 GTCAGCAGCTGCTCCAG 17 V_SPIB_01_M01204 TRANSFAC + 10057215 10057231 5.0E-06 AAGAAAAGGAAGAACGT 17 V_ATF3_Q6_M00513 TRANSFAC + 10054848 10054861 3.0E-06 CTGTGACATCAGCC 14 V_HNF4_DR1_Q3_M00764 TRANSFAC + 10057637 10057649 1.0E-05 AGACCTTTGCCTT 13 V_ICSBP_Q6_M00699 TRANSFAC + 10054867 10054878 2.0E-06 AACAAGAAACTG 12 V_ELK1_01_M00007 TRANSFAC + 10054807 10054822 4.0E-06 ATCACAGGAAGCCAGT 16 V_TFIII_Q6_M00706 TRANSFAC - 10053455 10053463 6.0E-06 AGAGGGAGG 9 V_RARA_04_M02891 TRANSFAC - 10052673 10052688 7.0E-06 AGCTTGGGGTCACTCC 16 V_MAZR_01_M00491 TRANSFAC - 10052920 10052932 6.0E-06 GGGGGTGGGGCCA 13 V_TAL1_01_M01591 TRANSFAC - 10057214 10057226 1.0E-06 CTTCCTTTTCTTC 13 V_CEBPA_01_M00116 TRANSFAC - 10050541 10050554 3.0E-06 TGATTGCACAAATA 14 V_DR1_Q3_M00762 TRANSFAC - 10057637 10057649 9.0E-06 AAGGCAAAGGTCT 13 V_SRF_01_M00152 TRANSFAC - 10057617 10057634 6.0E-06 ATTACCAAAGATGGTCTG 18 V_CEBPB_Q6_M01896 TRANSFAC + 10050544 10050553 2.0E-06 TTGTGCAATC 10 V_HFH3_01_M00289 TRANSFAC - 10057437 10057449 2.0E-06 TGATGTTTGTATT 13 V_VDR_Q3_M00444 TRANSFAC - 10050984 10050998 2.0E-06 GGGGGAAAGGGGACA 15 V_FOXO1_04_M01969 TRANSFAC + 10048254 10048273 6.0E-06 GTTGATCTAAACAAGTTGAC 20 V_IPF1_Q4_01_M01013 TRANSFAC + 10056896 10056910 1.0E-05 TGTGCCATTACAGAC 15 V_HOMEZ_01_M01429 TRANSFAC - 10057687 10057703 3.0E-06 AACCAATCGTTTTACAA 17 V_AP2ALPHA_02_M01045 TRANSFAC + 10054837 10054851 2.0E-06 ACAGCCTGAGGCTGT 15 V_AP2ALPHA_02_M01045 TRANSFAC - 10054837 10054851 2.0E-06 ACAGCCTCAGGCTGT 15 V_UF1H3BETA_Q6_M01068 TRANSFAC - 10052922 10052935 9.0E-06 TACGGGGGTGGGGC 14 V_CEBP_Q2_01_M00912 TRANSFAC - 10050541 10050552 8.0E-06 ATTGCACAAATA 12 V_AP2ALPHA_03_M01047 TRANSFAC + 10054837 10054851 0.0E+00 ACAGCCTGAGGCTGT 15 V_AP2ALPHA_03_M01047 TRANSFAC - 10054837 10054851 0.0E+00 ACAGCCTCAGGCTGT 15 V_TCFAP2E_03_M02822 TRANSFAC + 10054837 10054851 8.0E-06 ACAGCCTGAGGCTGT 15 V_COUP_DR1_Q6_M00765 TRANSFAC + 10057637 10057649 4.0E-06 AGACCTTTGCCTT 13 V_GLIS2_04_M02863 TRANSFAC - 10057624 10057637 3.0E-06 TGTATTACCAAAGA 14 V_SEF1_C_M00214 TRANSFAC + 10052559 10052577 8.0E-06 CACTCGGTCACCTGTGGTC 19 V_VDRRXR_01_M01202 TRANSFAC + 10057579 10057593 7.0E-06 AGGTTGCAGGGTTTG 15 V_PAX4_04_M00380 TRANSFAC + 10057322 10057351 5.0E-06 GACAAATACCGAGCCTCCCACCCCCACTCC 30 V_PAX4_04_M00380 TRANSFAC - 10057686 10057715 9.0E-06 AAAATAAAACAAAACCAATCGTTTTACAAC 30 PPARG_RXRA_MA0065.2 JASPAR - 10057637 10057651 2.0E-06 CTAAGGCAAAGGTCT 15 V_PPARA_01_M00242 TRANSFAC - 10057637 10057656 4.0E-06 AAATACTAAGGCAAAGGTCT 20 V_NF1_Q6_M00193 TRANSFAC - 10057240 10057257 5.0E-06 TCTTGGCATTGAGCCCAG 18 V_CEBPA_Q6_M01866 TRANSFAC + 10050541 10050553 4.0E-06 TATTTGTGCAATC 13 V_TCF4_01_M01705 TRANSFAC - 10057147 10057155 5.0E-06 CCTTTGATG 9

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.