Search TFs
or Genes
Construction
and Validation
Optimal
Promoter Size
Download Citation and
Contact

LMX1B


EntrezDescriptionChrom.StrandPromoter
(Start - Stop)
TSSMotifs
4010 LIM homeobox transcription factor 1, beta chr9 +129371721 - 129377221 129376721 LMX1B_homeodomain_full_monomeric_8_1
V_LMX1B_01_M01363

Transcription Factor Binding Sites

 
Download all TFBS in the LMX1B promoter
 
MotifSourceStrandStartStop PValueMatch
Sequence
Overlap w/
Footprints
CTCF_MA0139.1 JASPAR + 129374020 129374038 0.0E+00 CGACCAGCAGAGGGCAGAA 19
GABPA_MA0062.2 JASPAR - 129377803 129377813 5.0E-06 CCGGAAGTAGC 11
Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX + 129376151 129376164 3.0E-06 GGGTTCAAATGTCA 14
ESRRA_nuclearreceptor_DBD_dimeric_19_1 SELEX - 129377155 129377173 8.0E-06 CAAGGTGATTGCTAGGTCC 19
NR4A2_nuclearreceptor_full_monomeric_11_1 SELEX + 129376154 129376164 6.0E-06 TTCAAATGTCA 11
ELF4_ETS_full_monomeric_12_1 SELEX - 129377805 129377816 1.0E-06 ATCCCGGAAGTA 12
RXRG_nuclearreceptor_full_dimeric_14_1 SELEX + 129376151 129376164 1.0E-06 GGGTTCAAATGTCA 14
NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX + 129376151 129376164 4.0E-06 GGGTTCAAATGTCA 14
Pax4_MA0068.1 JASPAR - 129381428 129381457 1.0E-05 GAAATTTTTTAAAAACTCACCCCAGGACTC 30
RORA_nuclearreceptor_DBD_dimeric_19_1 SELEX + 129376960 129376978 6.0E-06 GAAATGGGTTTGCAGGACA 19
ELF3_ETS_full_monomeric_13_1 SELEX - 129377804 129377816 1.0E-06 ATCCCGGAAGTAG 13
Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 129377796 129377805 9.0E-06 ACCAGCTGCT 10
NR2F1_nuclearreceptor_DBD_dimeric_15_1 SELEX + 129376151 129376165 8.0E-06 GGGTTCAAATGTCAG 15
NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX + 129376151 129376164 4.0E-06 GGGTTCAAATGTCA 14
HNF4A_nuclearreceptor_full_dimeric_15_1 SELEX + 129376151 129376165 2.0E-06 GGGTTCAAATGTCAG 15
EHF_ETS_full_monomeric_12_1 SELEX - 129377805 129377816 1.0E-06 ATCCCGGAAGTA 12
ELF5_ETS_full_monomeric_11_1 SELEX - 129377805 129377815 6.0E-06 TCCCGGAAGTA 11
ELF1_ETS_full_monomeric_12_1 SELEX - 129377805 129377816 1.0E-06 ATCCCGGAAGTA 12
GABPA_ETS_full_monomeric_10_1 SELEX - 129377805 129377814 7.0E-06 CCCGGAAGTA 10
ELF3_ETS_DBD_monomeric_12_1 SELEX - 129377805 129377816 1.0E-06 ATCCCGGAAGTA 12
HNF4A_nuclearreceptor_full_dimeric_14_1 SELEX + 129376151 129376164 2.0E-06 GGGTTCAAATGTCA 14
Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX + 129376150 129376164 6.0E-06 GGGGTTCAAATGTCA 15
RXRA_nuclearreceptor_full_dimeric_14_1 SELEX + 129376151 129376164 2.0E-06 GGGTTCAAATGTCA 14
NFIA_NFI_full_monomeric_10_1 SELEX + 129380621 129380630 2.0E-06 AGTGCCAAGT 10
V_ELF5_02_M01980 TRANSFAC - 129377805 129377814 2.0E-06 CCCGGAAGTA 10
V_ELF5_03_M02057 TRANSFAC - 129377805 129377814 5.0E-06 CCCGGAAGTA 10
V_TEL1_02_M02070 TRANSFAC - 129377805 129377814 8.0E-06 CCCGGAAGTA 10
V_APOLYA_B_M00310 TRANSFAC - 129381112 129381126 2.0E-06 ATTAGACTCCATTTT 15
V_NERF_01_M01976 TRANSFAC - 129377805 129377814 3.0E-06 CCCGGAAGTA 10
V_ESE1_01_M01977 TRANSFAC - 129377805 129377814 3.0E-06 CCCGGAAGTA 10
V_ELF1_01_M01975 TRANSFAC - 129377805 129377814 3.0E-06 CCCGGAAGTA 10
V_MEIS1AHOXA9_01_M00420 TRANSFAC - 129381097 129381110 1.0E-06 TGACAGATTTTTGG 14
V_NKX25_Q6_M02108 TRANSFAC - 129376497 129376507 1.0E-05 GACACTTGCAG 11
V_SP1_02_M01303 TRANSFAC - 129374142 129374152 8.0E-06 GGGGCGGGGGC 11
V_AP4_Q6_01_M00927 TRANSFAC + 129377796 129377804 6.0E-06 ACCAGCTGC 9
V_TGIF2_01_M01407 TRANSFAC + 129381099 129381114 7.0E-06 AAAAATCTGTCACAAA 16
V_WT1_Q6_01_M02036 TRANSFAC + 129374141 129374150 4.0E-06 CGCCCCCGCC 10
V_ELF2_02_M02054 TRANSFAC - 129377805 129377814 2.0E-06 CCCGGAAGTA 10
V_ELF4_04_M02850 TRANSFAC + 129381442 129381458 4.0E-06 GTTTTTAAAAAATTTCC 17
V_ZNF219_01_M01122 TRANSFAC + 129381559 129381570 7.0E-06 CTCCCCCCACAC 12
V_LMX1_01_M01409 TRANSFAC - 129381441 129381457 9.0E-06 GAAATTTTTTAAAAACT 17
V_KROX_Q6_M00982 TRANSFAC + 129374139 129374152 0.0E+00 CGCGCCCCCGCCCC 14
V_STAT5A_02_M00460 TRANSFAC + 129381510 129381533 7.0E-06 TTCCTTGGAAGTGTTTACCCCGGG 24
V_MATH1_Q2_M01716 TRANSFAC - 129377795 129377804 3.0E-06 GCAGCTGGTG 10
V_EHF_02_M01974 TRANSFAC - 129377805 129377814 2.0E-06 CCCGGAAGTA 10
V_ASCL2_03_M02737 TRANSFAC + 129377793 129377809 1.0E-06 ACCACCAGCTGCTACTT 17
V_ISRE_01_M00258 TRANSFAC - 129377811 129377825 4.0E-06 CAGTTTCCGATCCCG 15
V_ERR1_Q3_M01841 TRANSFAC - 129374209 129374223 8.0E-06 GCTTGACCTGGAAAC 15
V_TEL2_Q6_M00678 TRANSFAC + 129377804 129377813 6.0E-06 CTACTTCCGG 10
V_PNR_01_M01650 TRANSFAC + 129376151 129376164 3.0E-06 GGGTTCAAATGTCA 14
V_NCX_02_M01420 TRANSFAC - 129381440 129381456 9.0E-06 AAATTTTTTAAAAACTC 17
V_TEL1_01_M01993 TRANSFAC - 129377805 129377814 8.0E-06 CCCGGAAGTA 10
V_CTCF_02_M01259 TRANSFAC + 129374017 129374036 1.0E-06 CCGCGACCAGCAGAGGGCAG 20
V_CTCF_01_M01200 TRANSFAC + 129374019 129374038 0.0E+00 GCGACCAGCAGAGGGCAGAA 20
V_ELF4_01_M01979 TRANSFAC - 129377805 129377814 6.0E-06 CCCGGAAGTA 10
V_HNF4A_02_M02868 TRANSFAC + 129381088 129381103 7.0E-06 TGGGAGAGTCCAAAAA 16
V_EHF_03_M02052 TRANSFAC - 129377805 129377814 1.0E-06 CCCGGAAGTA 10
V_YY1_03_M02044 TRANSFAC - 129381111 129381122 9.0E-06 GACTCCATTTTG 12
V_EHF_06_M02745 TRANSFAC - 129377804 129377818 3.0E-06 CGATCCCGGAAGTAG 15
V_DR1_Q3_M00762 TRANSFAC + 129376152 129376164 8.0E-06 GGTTCAAATGTCA 13
V_PLAG1_01_M01778 TRANSFAC + 129381062 129381077 7.0E-06 GAGGCTCCGGAAGGGG 16
V_MYCMAX_B_M00322 TRANSFAC - 129376488 129376497 3.0E-06 GCCACGCGCG 10
V_E2F3_03_M02743 TRANSFAC - 129381178 129381192 8.0E-06 ACAAAGGCGCCCGCT 15
V_TCF7_04_M02921 TRANSFAC - 129381440 129381454 6.0E-06 ATTTTTTAAAAACTC 15
V_TCF7_04_M02921 TRANSFAC + 129381441 129381455 8.0E-06 AGTTTTTAAAAAATT 15
V_LMX1B_01_M01363 TRANSFAC + 129381441 129381457 9.0E-06 AGTTTTTAAAAAATTTC 17
V_ZFP161_04_M02933 TRANSFAC - 129377763 129377776 4.0E-06 GCCGCGCACTGCAA 14
V_FPM315_01_M01587 TRANSFAC - 129377860 129377871 9.0E-06 GAAGGAGGACGA 12
V_STAT1STAT1_Q3_M01212 TRANSFAC + 129381408 129381420 2.0E-06 GTTTCACAGAAAG 13
V_ESE1_02_M02055 TRANSFAC - 129377805 129377814 2.0E-06 CCCGGAAGTA 10
V_YY1_01_M00059 TRANSFAC - 129381107 129381123 1.0E-06 AGACTCCATTTTGTGAC 17
V_ELF_02_M02053 TRANSFAC - 129377805 129377814 3.0E-06 CCCGGAAGTA 10
V_SOX12_03_M02796 TRANSFAC + 129380590 129380603 7.0E-06 GATTTGTTCTCAAA 14
V_RXRLXRB_01_M01198 TRANSFAC + 129376152 129376164 3.0E-06 GGTTCAAATGTCA 13
V_P300_01_M00033 TRANSFAC + 129377752 129377765 7.0E-06 ACGAGGAGTGTTTG 14
V_SREBP1_Q5_M01173 TRANSFAC - 129377002 129377016 4.0E-06 GCGATCACTCCAGGA 15
V_TR4_03_M01782 TRANSFAC + 129376152 129376164 3.0E-06 GGTTCAAATGTCA 13
V_ELF4_02_M02056 TRANSFAC - 129377805 129377814 7.0E-06 CCCGGAAGTA 10
V_ESE1_Q3_M01214 TRANSFAC - 129377805 129377814 2.0E-06 CCCGGAAGTA 10
V_PPARG_01_M00512 TRANSFAC + 129376148 129376168 6.0E-06 GCGGGGTTCAAATGTCAGGAA 21
Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns.
Developed at the Institute for Systems Biology in the Baliga Lab.
A Django site.   Powered by PostgreSQL