Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PATE2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 399967 chr11 + 125643714 - 125653714 0 Transcription Factor Binding Sites   Download all TFBS in the PATE2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU2F1_POU_DBD_dimeric_14_1 SELEX - 125647389 125647402 5.0E-06 TATCATTATTCAAA 14 RARB_nuclearreceptor_full_dimeric_16_1 SELEX - 125647448 125647463 2.0E-06 AAAGGAAATGAGGTCA 16 NFIL3_MA0025.1 JASPAR + 125643709 125643719 1.0E-06 TTATGTAACTT 6 POU6F2_POU_DBD_dimeric_16_1 SELEX + 125647444 125647459 1.0E-06 ATAATGACCTCATTTC 16 POU6F2_POU_DBD_dimeric_16_1 SELEX - 125647444 125647459 7.0E-06 GAAATGAGGTCATTAT 16 Pou5f1_MA0142.1 JASPAR + 125643704 125643718 7.0E-06 CATTTTTATGTAACT 5 POU3F3_POU_DBD_dimeric_12_1 SELEX + 125647390 125647401 7.0E-06 TTGAATAATGAT 12 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 125647486 125647498 6.0E-06 GGACACAAAAACA 13 Irx3_homeodomain_DBD_dimeric_12_1 SELEX - 125643705 125643716 1.0E-06 TTACATAAAAAT 3 RXR_RAR_DR5_MA0159.1 JASPAR - 125647331 125647347 2.0E-06 GGTTCACGAAGAGGGTA 17 V_GEN_INI_B_M00315 TRANSFAC + 125647451 125647458 1.0E-05 CCTCATTT 8 V_MEQCJUN_02_M02048 TRANSFAC - 125647447 125647457 1.0E-06 AATGAGGTCAT 11 V_POU3F3_01_M03090 TRANSFAC + 125647385 125647401 3.0E-06 CAGTTTTGAATAATGAT 17 V_RORA1_01_M00156 TRANSFAC - 125647447 125647459 9.0E-06 GAAATGAGGTCAT 13 V_ETS_B_M00340 TRANSFAC + 125647428 125647441 4.0E-06 GAGAGGAAATATGA 14 V_SPIB_02_M02041 TRANSFAC + 125647429 125647438 4.0E-06 AGAGGAAATA 10 V_POU5F1_02_M02245 TRANSFAC + 125643704 125643718 7.0E-06 CATTTTTATGTAACT 5 V_SATB1_Q3_M01723 TRANSFAC + 125647390 125647405 6.0E-06 TTGAATAATGATACAT 16 V_MAFB_03_M02879 TRANSFAC - 125643705 125643719 7.0E-06 AAGTTACATAAAAAT 6 V_OCTAMER_01_M01324 TRANSFAC + 125647385 125647401 3.0E-06 CAGTTTTGAATAATGAT 17 V_AP4_Q6_M00176 TRANSFAC + 125647366 125647375 2.0E-06 CACAGCTGGT 10 V_PU1_Q4_M01172 TRANSFAC - 125647426 125647444 4.0E-06 TGATCATATTTCCTCTCTT 19 V_PU1_Q4_M01172 TRANSFAC + 125647448 125647466 9.0E-06 TGACCTCATTTCCTTTTAC 19 V_CDP_04_M01344 TRANSFAC + 125647305 125647319 9.0E-06 TTACTATGATCACAA 15 V_CDP_04_M01344 TRANSFAC - 125647436 125647450 7.0E-06 TCATTATGATCATAT 15 V_ETS_Q4_M00771 TRANSFAC - 125647349 125647360 3.0E-06 ATCAACTTCCTG 12 V_SPIC_01_M02042 TRANSFAC + 125647429 125647438 7.0E-06 AGAGGAAATA 10 V_ELF4_04_M02850 TRANSFAC - 125643701 125643717 2.0E-06 GTTACATAAAAATGTAC 4 V_GEN_INI3_B_M00314 TRANSFAC + 125647451 125647458 1.0E-05 CCTCATTT 8 V_DBP_Q6_01_M01872 TRANSFAC + 125643709 125643716 5.0E-06 TTATGTAA 3 V_SOX18_03_M02801 TRANSFAC - 125647387 125647402 5.0E-06 TATCATTATTCAAAAC 16 V_ELF5_01_M01197 TRANSFAC - 125647454 125647464 6.0E-06 AAAAGGAAATG 11 V_CUX1_04_M02959 TRANSFAC + 125647305 125647319 9.0E-06 TTACTATGATCACAA 15 V_CUX1_04_M02959 TRANSFAC - 125647436 125647450 7.0E-06 TCATTATGATCATAT 15 V_OCT1_04_M00138 TRANSFAC - 125647381 125647403 5.0E-06 GTATCATTATTCAAAACTGTCGT 23 V_AP4_Q5_M00175 TRANSFAC + 125647366 125647375 6.0E-06 CACAGCTGGT 10 V_FOXO1_Q5_M01216 TRANSFAC - 125647484 125647492 1.0E-05 AAAAACAGA 9 V_VBP_01_M00228 TRANSFAC - 125643708 125643717 7.0E-06 GTTACATAAA 4 V_GR_Q6_02_M01836 TRANSFAC - 125643729 125643741 9.0E-06 GAATTTGTTCTTA 13 V_VJUN_01_M00036 TRANSFAC + 125647444 125647459 4.0E-06 ATAATGACCTCATTTC 16 V_FOXJ3_06_M02855 TRANSFAC + 125647310 125647326 4.0E-06 ATGATCACAACAGATGA 17 V_GEN_INI2_B_M00313 TRANSFAC + 125647451 125647458 1.0E-05 CCTCATTT 8 V_RXR_RAR_01_M02272 TRANSFAC - 125647331 125647347 2.0E-06 GGTTCACGAAGAGGGTA 17 V_DMRT2_01_M01147 TRANSFAC + 125643707 125643722 7.0E-06 TTTTATGTAACTTTGT 9 V_HLF_01_M00260 TRANSFAC - 125643708 125643717 1.0E-05 GTTACATAAA 4 V_HMEF2_Q6_M00406 TRANSFAC + 125647240 125647255 8.0E-06 GTTGAAAAAGAACCCA 16 V_EHF_07_M02849 TRANSFAC - 125647426 125647441 6.0E-06 TCATATTTCCTCTCTT 16 V_RFX1_02_M00281 TRANSFAC - 125647293 125647310 7.0E-06 TAGTAACTACTGCAACCT 18 V_RFX1_02_M00281 TRANSFAC - 125647302 125647319 9.0E-06 TTGTGATCATAGTAACTA 18 V_DMRT5_01_M01150 TRANSFAC + 125643709 125643723 3.0E-06 TTATGTAACTTTGTA 10 V_SPI1_02_M02043 TRANSFAC + 125647429 125647438 3.0E-06 AGAGGAAATA 10 V_OCT4_01_M01125 TRANSFAC + 125643704 125643718 3.0E-06 CATTTTTATGTAACT 5

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.