Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

LDHC Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 3948 lactate dehydrogenase C chr11 + 18428852 - 18434352 18433852 Transcription Factor Binding Sites   Download all TFBS in the LDHC promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 18433641 18433657 7.0E-06 ATTTTAAAAAATTATTA 17 SRY_HMG_DBD_dimeric_15_1 SELEX + 18429563 18429577 7.0E-06 ACCACTTCCATTGTA 15 SOX2_HMG_full_dimeric_17_1 SELEX + 18429562 18429578 1.0E-06 TACCACTTCCATTGTAA 17 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 18430285 18430296 1.0E-05 ACTAAAAATCGA 12 POU3F4_POU_DBD_monomeric_11_1 SELEX + 18429248 18429258 5.0E-06 TGCATAATTCT 11 SOX8_HMG_full_dimeric_15_1 SELEX - 18429083 18429097 7.0E-06 AGCATTGGCAGTGGT 15 ZNF232_C2H2_full_monomeric_19_1 SELEX + 18431995 18432013 7.0E-06 AAGCAAAATGTTAAGTAAG 19 Sox17_HMG_DBD_dimeric_15_1 SELEX + 18429563 18429577 9.0E-06 ACCACTTCCATTGTA 15 GMEB2_SAND_DBD_dimer-of-dimers_14_1 SELEX - 18433820 18433833 5.0E-06 TGCGTCAGCACGCA 14 ZNF524_C2H2_full_dimeric_12_1 SELEX + 18430842 18430853 2.0E-06 TCCCTTGAACCC 12 MEF2B_MADS_full_dimeric_12_1 SELEX + 18430285 18430296 8.0E-06 ACTAAAAATCGA 12 CEBPB_bZIP_full_dimeric_10_1 SELEX - 18432593 18432602 7.0E-06 ATTATGCAAT 10 SOX14_HMG_DBD_dimeric_13_1 SELEX + 18429564 18429576 1.0E-05 CCACTTCCATTGT 13 ATF4_bZIP_DBD_dimeric_13_1 SELEX - 18432592 18432604 6.0E-06 AGATTATGCAATA 13 Atf4_bZIP_DBD_dimeric_14_1 SELEX - 18432592 18432605 5.0E-06 CAGATTATGCAATA 14 SOX15_HMG_full_dimeric_15_1 SELEX + 18429563 18429577 5.0E-06 ACCACTTCCATTGTA 15 SOX14_HMG_DBD_dimeric_12_1 SELEX + 18429564 18429575 6.0E-06 CCACTTCCATTG 12 NFIL3_bZIP_DBD_dimeric_12_1 SELEX + 18432592 18432603 3.0E-06 TATTGCATAATC 12 POU1F1_POU_DBD_monomeric_17_1 SELEX + 18429244 18429260 6.0E-06 CTTGTGCATAATTCTTC 17 ID4_bHLH_DBD_dimeric_10_1 SELEX - 18432117 18432126 5.0E-06 TACACCTGCC 10 HLF_MA0043.1 JASPAR - 18432592 18432603 7.0E-06 GATTATGCAATA 12 Sox1_HMG_DBD_dimeric_15_1 SELEX + 18429563 18429577 2.0E-06 ACCACTTCCATTGTA 15 V_DBX1_01_M01483 TRANSFAC + 18433640 18433656 2.0E-06 TTAATAATTTTTTAAAA 17 V_DBX1_01_M01483 TRANSFAC + 18433641 18433657 1.0E-06 TAATAATTTTTTAAAAT 17 V_GEN_INI_B_M00315 TRANSFAC - 18432181 18432188 1.0E-05 CCTCATTT 8 V_FLI1_Q6_M01208 TRANSFAC - 18429204 18429214 4.0E-06 CAGGATGTGAC 11 V_EVI1_05_M00082 TRANSFAC - 18429235 18429245 4.0E-06 AGACATGATAT 11 V_CHOP_01_M00249 TRANSFAC - 18432589 18432601 6.0E-06 TTATGCAATAACC 13 V_MAFK_03_M02776 TRANSFAC - 18431991 18432005 6.0E-06 ACATTTTGCTTACTT 15 V_CEBP_Q3_M00770 TRANSFAC - 18432593 18432604 7.0E-06 AGATTATGCAAT 12 V_MAFB_05_M02775 TRANSFAC - 18431988 18432004 4.0E-06 CATTTTGCTTACTTGAT 17 V_ISL2_01_M01328 TRANSFAC - 18432002 18432017 4.0E-06 CAAACTTACTTAACAT 16 V_SOX11_04_M02899 TRANSFAC + 18430140 18430153 6.0E-06 AGAATTGTCTTGGG 14 V_CEBP_Q2_M00190 TRANSFAC + 18432591 18432604 2.0E-06 TTATTGCATAATCT 14 V_YY1_Q6_M00793 TRANSFAC - 18430413 18430421 7.0E-06 GCCATCTTG 9 V_IRF3_05_M02767 TRANSFAC - 18431159 18431172 7.0E-06 AAGTAAGGAAACTT 14 V_PITX2_Q6_M02114 TRANSFAC + 18430326 18430335 1.0E-06 TGTAATCCCA 10 V_E2A_Q2_M00804 TRANSFAC - 18432112 18432125 2.0E-06 ACACCTGCCTCAGG 14 V_HOXC13_01_M01317 TRANSFAC + 18431149 18431164 7.0E-06 CAATCTTGTAAAGTTT 16 V_CEBPB_01_M00109 TRANSFAC - 18432591 18432604 1.0E-06 AGATTATGCAATAA 14 V_RPC155_01_M01798 TRANSFAC + 18430238 18430253 0.0E+00 TCAGGAGTTCAAGACT 16 V_ETS_Q4_M00771 TRANSFAC + 18429203 18429214 5.0E-06 AGTCACATCCTG 12 V_ELF4_04_M02850 TRANSFAC - 18433640 18433656 5.0E-06 TTTTAAAAAATTATTAA 17 V_ELF4_04_M02850 TRANSFAC - 18433641 18433657 2.0E-06 ATTTTAAAAAATTATTA 17 V_GC_01_M00255 TRANSFAC + 18433807 18433820 2.0E-06 GGGGGGCGGAGCTT 14 V_GEN_INI3_B_M00314 TRANSFAC - 18432181 18432188 1.0E-05 CCTCATTT 8 V_CEBPE_Q6_M01868 TRANSFAC - 18432004 18432017 4.0E-06 CAAACTTACTTAAC 14 V_OCT1_02_M00136 TRANSFAC - 18432591 18432605 6.0E-06 CAGATTATGCAATAA 15 V_NKX61_01_M00424 TRANSFAC - 18430155 18430167 6.0E-06 TATTTAATGTGTG 13 V_CEBPB_02_M00117 TRANSFAC + 18432591 18432604 1.0E-06 TTATTGCATAATCT 14 V_SP1_Q6_M00196 TRANSFAC + 18433807 18433819 4.0E-06 GGGGGGCGGAGCT 13 V_ARID3A_02_M02839 TRANSFAC + 18429231 18429245 3.0E-06 TCCAATATCATGTCT 15 V_EVI1_01_M00078 TRANSFAC - 18429027 18429042 1.0E-06 AGACTACACAAGATTA 16 V_PIT1_01_M01465 TRANSFAC + 18433641 18433657 8.0E-06 TAATAATTTTTTAAAAT 17 V_EVI1_Q3_M02002 TRANSFAC + 18429236 18429244 8.0E-06 TATCATGTC 9 V_MEF2_04_M00233 TRANSFAC + 18430279 18430300 1.0E-06 ATCTGTACTAAAAATCGAAAGA 22 V_NCX_02_M01420 TRANSFAC + 18433644 18433660 8.0E-06 TAATTTTTTAAAATCCT 17 V_AP1_Q2_01_M00924 TRANSFAC - 18429196 18429207 8.0E-06 TGACTCACTGGG 12 V_EVI1_06_M00011 TRANSFAC - 18429027 18429035 7.0E-06 ACAAGATTA 9 V_HOXD9_Q2_M01834 TRANSFAC + 18430156 18430165 3.0E-06 ACACATTAAA 10 V_BRN4_01_M01473 TRANSFAC + 18433641 18433657 8.0E-06 TAATAATTTTTTAAAAT 17 V_CEBPA_01_M00116 TRANSFAC + 18432591 18432604 0.0E+00 TTATTGCATAATCT 14 V_IPF1_05_M01255 TRANSFAC + 18430156 18430167 1.0E-06 ACACATTAAATA 12 V_MYOD_Q6_01_M00929 TRANSFAC + 18432113 18432130 3.0E-06 CTGAGGCAGGTGTAGAGC 18 V_LUN1_01_M00480 TRANSFAC + 18430331 18430347 0.0E+00 TCCCAGCTACTTGGGAA 17 V_GEN_INI2_B_M00313 TRANSFAC - 18432181 18432188 1.0E-05 CCTCATTT 8 V_ZBTB4_04_M02929 TRANSFAC - 18429191 18429206 5.0E-06 GACTCACTGGGAAAAA 16 V_TCF7_04_M02921 TRANSFAC + 18432608 18432622 9.0E-06 CCATATTGAAAACAA 15 V_BDP1_01_M01796 TRANSFAC - 18430242 18430253 9.0E-06 AGTCTTGAACTC 12 V_HNF1B_01_M01425 TRANSFAC - 18430064 18430080 2.0E-06 TTCCCTTAACTAGCTCT 17 V_TCF4_Q5_M00671 TRANSFAC - 18433949 18433956 1.0E-05 CCTTTGAA 8 V_PITX2_Q2_M00482 TRANSFAC + 18430326 18430336 1.0E-06 TGTAATCCCAG 11 V_ETS1_B_M00339 TRANSFAC - 18429201 18429215 5.0E-06 CCAGGATGTGACTCA 15 V_CEBPB_Q6_M01896 TRANSFAC - 18432592 18432601 0.0E+00 TTATGCAATA 10 V_SRF_06_M02916 TRANSFAC - 18433641 18433657 4.0E-06 ATTTTAAAAAATTATTA 17 V_SIX6_08_M02897 TRANSFAC - 18429220 18429236 1.0E-05 ATTGGATTTATACACTG 17 V_CEBP_Q2_01_M00912 TRANSFAC + 18432593 18432604 0.0E+00 ATTGCATAATCT 12 V_CMAF_01_M01070 TRANSFAC + 18433819 18433837 9.0E-06 TTGCGTGCTGACGCATAAG 19 V_SOX5_07_M02909 TRANSFAC + 18430137 18430153 8.0E-06 AGAAGAATTGTCTTGGG 17 V_SP1_Q4_01_M00932 TRANSFAC + 18433807 18433819 9.0E-06 GGGGGGCGGAGCT 13 V_CEBPE_01_M01772 TRANSFAC - 18432593 18432602 2.0E-06 ATTATGCAAT 10 V_CEBPA_Q6_M01866 TRANSFAC - 18432592 18432604 1.0E-06 AGATTATGCAATA 13 V_AP2_Q3_M00800 TRANSFAC - 18432165 18432180 8.0E-06 ATCCCCGGGCTGAGAG 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.