Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

LCAT Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 3931 lecithin-cholesterol acyltransferase chr16 - 67977515 - 67983015 67978015 Transcription Factor Binding Sites   Download all TFBS in the LCAT promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX - 67979573 67979583 3.0E-06 AATGACTCACC 11 CTCF_MA0139.1 JASPAR + 67978721 67978739 3.0E-06 AGGCCACAAGATGACACTG 19 Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX - 67977158 67977171 3.0E-06 GGGGGTAAGGGTCA 14 FOXA1_MA0148.1 JASPAR - 67977366 67977376 1.0E-06 TGTTTGCTCTG 11 IRX2_homeodomain_DBD_dimeric_12_1 SELEX - 67978690 67978701 1.0E-05 GGACATAACAAG 12 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX + 67974161 67974170 2.0E-06 GTCACGTGAC 10 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX - 67974161 67974170 2.0E-06 GTCACGTGAC 10 RARG_nuclearreceptor_full_dimeric_17_1 SELEX + 67974158 67974174 7.0E-06 GAGGTCACGTGACTGCA 17 RUNX3_RUNX_DBD_dimeric_16_1 SELEX + 67978674 67978689 9.0E-06 TTACCCCAGACCACAG 16 NR2F1_MA0017.1 JASPAR + 67977158 67977171 8.0E-06 TGACCCTTACCCCC 14 USF1_bHLH_DBD_dimeric_10_1 SELEX + 67974161 67974170 3.0E-06 GTCACGTGAC 10 USF1_bHLH_DBD_dimeric_10_1 SELEX - 67974161 67974170 3.0E-06 GTCACGTGAC 10 Ar_MA0007.1 JASPAR + 67977608 67977629 6.0E-06 TCAGGCACACCCCGTCCCCCAC 22 BHLHE41_bHLH_full_dimeric_10_1 SELEX + 67974161 67974170 1.0E-06 GTCACGTGAC 10 BHLHE41_bHLH_full_dimeric_10_1 SELEX - 67974161 67974170 1.0E-06 GTCACGTGAC 10 XBP1_bZIP_DBD_dimeric_14_1 SELEX + 67979348 67979361 1.0E-06 TGGTCCACGTCATC 14 SREBF2_bHLH_DBD_dimeric_10_1 SELEX + 67974161 67974170 3.0E-06 GTCACGTGAC 10 SREBF2_bHLH_DBD_dimeric_10_1 SELEX - 67974161 67974170 3.0E-06 GTCACGTGAC 10 NR2F1_nuclearreceptor_DBD_dimeric_15_1 SELEX - 67977157 67977171 8.0E-06 GGGGGTAAGGGTCAC 15 Bhlhb2_bHLH_DBD_monomeric_10_1 SELEX + 67974161 67974170 3.0E-06 GTCACGTGAC 10 Bhlhb2_bHLH_DBD_monomeric_10_1 SELEX - 67974161 67974170 3.0E-06 GTCACGTGAC 10 znf143_MA0088.1 JASPAR + 67974179 67974198 5.0E-06 CATGTACCAGCCTTCCTCAA 20 Srebf1_bHLH_DBD_dimeric_10_1 SELEX + 67974161 67974170 3.0E-06 GTCACGTGAC 10 Srebf1_bHLH_DBD_dimeric_10_1 SELEX - 67974161 67974170 3.0E-06 GTCACGTGAC 10 TFEB_bHLH_full_dimeric_10_1 SELEX + 67974161 67974170 3.0E-06 GTCACGTGAC 10 TFEB_bHLH_full_dimeric_10_1 SELEX - 67974161 67974170 3.0E-06 GTCACGTGAC 10 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX - 67977158 67977171 8.0E-06 GGGGGTAAGGGTCA 14 SP1_C2H2_DBD_monomeric_11_1 SELEX - 67977889 67977899 1.0E-05 ACCACGCCCAA 11 JDP2_bZIP_full_dimeric_9_1 SELEX - 67979574 67979582 7.0E-06 ATGACTCAC 9 SRF_MADS_full_dimeric_16_1 SELEX - 67978046 67978061 7.0E-06 ACACCAGATAAGGACA 16 TFE3_bHLH_DBD_dimeric_10_1 SELEX + 67974161 67974170 4.0E-06 GTCACGTGAC 10 TFE3_bHLH_DBD_dimeric_10_1 SELEX - 67974161 67974170 4.0E-06 GTCACGTGAC 10 TFEC_bHLH_DBD_dimeric_10_1 SELEX + 67974161 67974170 8.0E-06 GTCACGTGAC 10 TFEC_bHLH_DBD_dimeric_10_1 SELEX - 67974161 67974170 8.0E-06 GTCACGTGAC 10 TFAP2A_MA0003.1 JASPAR + 67978075 67978083 8.0E-06 GCCCTAGGG 9 TFAP2A_MA0003.1 JASPAR - 67978076 67978084 8.0E-06 GCCCTAGGG 9 GLIS3_C2H2_DBD_monomeric_14_1 SELEX - 67978297 67978310 4.0E-06 GGCCCCCCACCAAG 14 FOXO6_forkhead_DBD_putatively-multimeric_14_1 SELEX - 67975588 67975601 4.0E-06 CATCCCCACACATC 14 MLX_bHLH_full_dimeric_10_1 SELEX + 67974161 67974170 5.0E-06 GTCACGTGAC 10 MLX_bHLH_full_dimeric_10_1 SELEX - 67974161 67974170 5.0E-06 GTCACGTGAC 10 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX - 67975590 67975601 7.0E-06 CATCCCCACACA 12 RXRA_nuclearreceptor_full_dimeric_14_1 SELEX - 67977158 67977171 9.0E-06 GGGGGTAAGGGTCA 14 ARNTL_bHLH_DBD_dimeric_10_1 SELEX + 67974161 67974170 1.0E-06 GTCACGTGAC 10 ARNTL_bHLH_DBD_dimeric_10_1 SELEX - 67974161 67974170 1.0E-06 GTCACGTGAC 10 BHLHB3_bHLH_full_dimeric_10_1 SELEX + 67974161 67974170 2.0E-06 GTCACGTGAC 10 BHLHB3_bHLH_full_dimeric_10_1 SELEX - 67974161 67974170 2.0E-06 GTCACGTGAC 10 AR_nuclearreceptor_full_dimeric_17_1 SELEX - 67977610 67977626 8.0E-06 GGGGACGGGGTGTGCCT 17 V_AP2ALPHA_01_M00469 TRANSFAC + 67978075 67978083 8.0E-06 GCCCTAGGG 9 V_AP2ALPHA_01_M00469 TRANSFAC - 67978076 67978084 8.0E-06 GCCCTAGGG 9 V_ELF5_02_M01980 TRANSFAC + 67979291 67979300 3.0E-06 CCCGGAAATT 10 V_SPI1_01_M01203 TRANSFAC - 67978173 67978189 1.0E-05 AGAAGGCGGAACTGAAC 17 V_STAT3_01_M00225 TRANSFAC + 67979532 67979552 1.0E-05 CCTTGCCTCCGGGAAATGAGC 21 V_STAT3_01_M00225 TRANSFAC - 67979532 67979552 1.0E-05 GCTCATTTCCCGGAGGCAAGG 21 V_USF_Q6_M00187 TRANSFAC + 67974161 67974170 4.0E-06 GTCACGTGAC 10 V_USF_Q6_M00187 TRANSFAC - 67974161 67974170 4.0E-06 GTCACGTGAC 10 V_OSF2_Q6_M00731 TRANSFAC + 67979649 67979656 1.0E-05 ACCACAAA 8 V_CEBP_Q3_M00770 TRANSFAC - 67977396 67977407 7.0E-06 GACTTTGGCAAT 12 V_ARNT_02_M00539 TRANSFAC + 67974156 67974175 4.0E-06 AGGAGGTCACGTGACTGCAG 20 V_ARNT_02_M00539 TRANSFAC - 67974156 67974175 4.0E-06 CTGCAGTCACGTGACCTCCT 20 V_AML3_Q6_M01856 TRANSFAC + 67979648 67979655 1.0E-05 AACCACAA 8 V_NERF_01_M01976 TRANSFAC + 67979291 67979300 7.0E-06 CCCGGAAATT 10 V_ZTA_Q2_M00711 TRANSFAC - 67979575 67979587 6.0E-06 TCAGAATGACTCA 13 V_ELF1_01_M01975 TRANSFAC + 67979291 67979300 4.0E-06 CCCGGAAATT 10 V_CEBP_C_M00201 TRANSFAC - 67976799 67976816 7.0E-06 TGGCTTTGGCAAGACCTA 18 V_HNF4_Q6_M00967 TRANSFAC + 67977402 67977410 2.0E-06 AAAGTCCAA 9 V_ARNT_01_M00236 TRANSFAC + 67974158 67974173 4.0E-06 GAGGTCACGTGACTGC 16 V_GATA_C_M00203 TRANSFAC - 67978046 67978056 3.0E-06 AGATAAGGACA 11 V_COUPTF_Q6_M01036 TRANSFAC + 67977153 67977175 0.0E+00 CCCCGTGACCCTTACCCCCGTCA 23 V_HOXD13_01_M01404 TRANSFAC - 67978244 67978259 0.0E+00 TTTTCAATAAAACATT 16 V_HBP1_Q2_M01661 TRANSFAC - 67978249 67978257 4.0E-06 TTCAATAAA 9 V_REX1_01_M01695 TRANSFAC + 67976626 67976635 5.0E-06 GTAGCCATTG 10 V_ELF2_02_M02054 TRANSFAC + 67979291 67979300 4.0E-06 CCCGGAAATT 10 V_BACH1_01_M00495 TRANSFAC + 67979571 67979585 1.0E-06 GCGGTGAGTCATTCT 15 V_GC_01_M00255 TRANSFAC + 67975603 67975616 8.0E-06 TGGGGGCGGTGCTG 14 V_TCFAP2C_03_M02821 TRANSFAC - 67979533 67979547 9.0E-06 TTTCCCGGAGGCAAG 15 V_SREBP1_01_M00220 TRANSFAC + 67974160 67974170 5.0E-06 GGTCACGTGAC 11 V_COUP_01_M00158 TRANSFAC + 67977158 67977171 8.0E-06 TGACCCTTACCCCC 14 V_AML2_01_M01759 TRANSFAC + 67979648 67979655 1.0E-05 AACCACAA 8 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 67977366 67977376 8.0E-06 TGTTTGCTCTG 11 V_LXR_DR4_Q3_M00766 TRANSFAC + 67979636 67979651 6.0E-06 CGCCCTGGCGTGAACC 16 V_SREBP_Q6_M01168 TRANSFAC + 67977169 67977183 4.0E-06 CCCGTCACCCCAGAT 15 V_MATH1_Q2_M01716 TRANSFAC - 67974133 67974142 9.0E-06 GCACCTGGTG 10 V_EHF_02_M01974 TRANSFAC + 67979291 67979300 5.0E-06 CCCGGAAATT 10 V_JUNDM2_04_M02876 TRANSFAC - 67979571 67979586 4.0E-06 CAGAATGACTCACCGC 16 V_SP1SP3_Q4_M01219 TRANSFAC - 67977930 67977940 4.0E-06 CCGCCCCCTTC 11 V_USF_01_M00121 TRANSFAC + 67974159 67974172 4.0E-06 AGGTCACGTGACTG 14 V_USF_01_M00121 TRANSFAC - 67974159 67974172 4.0E-06 CAGTCACGTGACCT 14 V_TAXCREB_02_M00115 TRANSFAC + 67977157 67977171 6.0E-06 GTGACCCTTACCCCC 15 V_SRF_Q5_02_M01007 TRANSFAC + 67978044 67978062 7.0E-06 GCTGTCCTTATCTGGTGTG 19 V_SMAD4_Q6_M00733 TRANSFAC + 67977640 67977654 9.0E-06 CTGGGTTAGACAACT 15 V_LMO2COM_01_M00277 TRANSFAC + 67974133 67974144 6.0E-06 CACCAGGTGCTG 12 V_CTCF_02_M01259 TRANSFAC + 67977921 67977940 3.0E-06 GAGGAGCCAGAAGGGGGCGG 20 V_CTCF_01_M01200 TRANSFAC + 67977923 67977942 0.0E+00 GGAGCCAGAAGGGGGCGGCA 20 V_ELF4_01_M01979 TRANSFAC + 67979291 67979300 6.0E-06 CCCGGAAATT 10 V_HNF4A_02_M02868 TRANSFAC + 67977398 67977413 1.0E-06 TGCCAAAGTCCAAGGT 16 V_SP4_Q5_M01273 TRANSFAC - 67976883 67976893 7.0E-06 CCCCCGCCCCG 11 V_AP1_Q4_01_M00926 TRANSFAC + 67979575 67979582 1.0E-05 TGAGTCAT 8 V_MYOD_Q6_02_M02100 TRANSFAC + 67978275 67978283 8.0E-06 CAGCTGTCT 9 V_MAZR_01_M00491 TRANSFAC - 67977709 67977721 2.0E-06 TGGGGAGGGGCCA 13 V_HIF1_Q3_M00797 TRANSFAC - 67976618 67976631 6.0E-06 GGCTACGTGCGGGA 14 V_STRA13_01_M00985 TRANSFAC - 67974159 67974172 3.0E-06 CAGTCACGTGACCT 14 V_GATA1_04_M00128 TRANSFAC - 67978047 67978059 1.0E-06 ACCAGATAAGGAC 13 V_TFEB_01_M01768 TRANSFAC + 67974161 67974170 3.0E-06 GTCACGTGAC 10 V_TFEB_01_M01768 TRANSFAC - 67974161 67974170 3.0E-06 GTCACGTGAC 10 V_DELTAEF1_01_M00073 TRANSFAC + 67976260 67976270 5.0E-06 TCTCACCTGAG 11 V_HNF4_Q6_01_M01031 TRANSFAC + 67977397 67977410 9.0E-06 TTGCCAAAGTCCAA 14 V_FRA1_Q5_M01267 TRANSFAC + 67979575 67979582 1.0E-05 TGAGTCAT 8 V_SRF_01_M00152 TRANSFAC + 67978045 67978062 8.0E-06 CTGTCCTTATCTGGTGTG 18 V_LMO2COM_02_M00278 TRANSFAC - 67978049 67978057 3.0E-06 CAGATAAGG 9 V_SRF_02_M01257 TRANSFAC - 67978043 67978060 5.0E-06 CACCAGATAAGGACAGCC 18 V_TCFAP2A_03_M02819 TRANSFAC - 67979533 67979547 2.0E-06 TTTCCCGGAGGCAAG 15 V_ELF_02_M02053 TRANSFAC + 67979291 67979300 6.0E-06 CCCGGAAATT 10 V_HNF4_01_M00134 TRANSFAC - 67977155 67977173 4.0E-06 ACGGGGGTAAGGGTCACGG 19 V_LPOLYA_B_M00318 TRANSFAC - 67977392 67977399 7.0E-06 CAATAAAG 8 V_SP1_Q4_01_M00932 TRANSFAC + 67978065 67978077 3.0E-06 AGTGGGAGGGGCC 13 V_HOXD10_01_M01375 TRANSFAC - 67978243 67978259 5.0E-06 TTTTCAATAAAACATTG 17 V_SREBP1_Q5_M01173 TRANSFAC + 67977169 67977183 7.0E-06 CCCGTCACCCCAGAT 15 V_GLIS2_04_M02863 TRANSFAC + 67978249 67978262 9.0E-06 TTTATTGAAAAAGT 14 V_ELF4_02_M02056 TRANSFAC + 67979291 67979300 4.0E-06 CCCGGAAATT 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.